KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:52 2014 Check: 00 .. Name: BACU018200/1-1096 Len: 1149 Check: 8044 Weight: 1.00 Name: ENSBTAP00000003035/1-600 Len: 1149 Check: 5528 Weight: 1.00 Name: ENSP00000311962/1-613 Len: 1149 Check: 1260 Weight: 1.00 Name: bmy_18720T0/1-542 Len: 1149 Check: 5589 Weight: 1.00 Name: ENSTTRP00000004941/1-614 Len: 1149 Check: 8763 Weight: 1.00 // 1 50 BACU018200/1-1096 MAVLLKRLLH PRRPLGRPLG RREASLDTHA GAAVRVRFAP SPTGFLHLGG ENSBTAP00000003035/1-600 ---------- ---------- ----TVD--- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- MAATAVAAAV ---------- ---------- bmy_18720T0/1-542 ---------- ---------- MAATAVAAGA GAA------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ATATAVAAGA GAA------- ---------- 51 100 BACU018200/1-1096 LRAALYNYIF AKKHRGSFIL RLEDTDQTRL VPGAAENIED MLEWAGIPPD ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ----AGTESA bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ----AGAESA ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ----AGAESA 101 150 BACU018200/1-1096 ESPRRGGPAG PYLQSQRLAL YAQATEALLK SGAAYPCFCS PQRLELLKRE ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 QGP------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 EGP------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 EGP------- ---------- ---------- ---------- ---------- 151 200 BACU018200/1-1096 ALRNRQTPRY DNRCRSLSEA QVAQKLAKDP KPAIRFHLEG EAPAFQDLVY ENSBTAP00000003035/1-600 ---------- ---------- ---------P QPC-RLSV-- ---------- ENSP00000311962/1-613 ---------- ---------- ---------P GPAASLEL-- ---------- bmy_18720T0/1-542 ---------- ---------- ---------P GPAAALEL-- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------P GPAAALEL-- ---------- 201 250 BACU018200/1-1096 GWNRHEVASV EGDPVILKSD GFPTYHLACV VDDHHMGISH VLRGSEWLVS ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ------WL-- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ------WL-- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ------WL-- 251 300 BACU018200/1-1096 TSKHLLLYQA LGWQPPRFAH LPLLLNRDGS KLSKRQGDIY LEHFAAAGFL ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ---------- 301 350 BACU018200/1-1096 PDALLDIITS CGSGFAENQM GRTLPELITQ FDLTRVTCHS ALLDLEKLPE ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ---------- 351 400 BACU018200/1-1096 FNRLHLRRLV SDETQRRQLV GKLQALVEEA FGSQLQDRHV LDAAYVERII ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ---------- 401 450 BACU018200/1-1096 LLRQGHICRL QDLVSPVHSY LWTRPAVGRA QLGAVSEKVD VIAKRVLGLL ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ---------- 451 500 BACU018200/1-1096 EGPGMSLTQD MLNGELKKLS EGLEGTKHSN VMKLLRVALS GQLGRESELC ENSBTAP00000003035/1-600 ---------- ---------- ---------- ---------- ---------- ENSP00000311962/1-613 ---------- ---------- ---------- ---------- ---------- bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004941/1-614 ---------- ---------- ---------- ---------- ---------- 501 550 BACU018200/1-1096 KPDFWGLGRS GGDKATDPSM SEQDWSAIQN FCDQVNTDPN GSTHAPWLLA ENSBTAP00000003035/1-600 -----CCVPS SGDKATDPSM SEQDWSAIQN FCDQVNTDPN GSTYAPWLLA ENSP00000311962/1-613 ---------- --NKATDPSM SEQDWSAIQN FCEQVNTDPN GPTHAPWLLA bmy_18720T0/1-542 ---------- --NKATDPSM SEQDWSAIQN FCDQVNTDPN GSTHAPWLLA ENSTTRP00000004941/1-614 ---------- --NKATDPSM S-QDWSAIQN FCDQVNTDPS GXXXXXXXXX 551 600 BACU018200/1-1096 HKIQSPQEKE ALYALTVLEV CVNHCGEKFH NEVAKFRFLN ELIKVLSPKY ENSBTAP00000003035/1-600 HKIQSPQEKE ALYALTVLET CVNHCGEKFH NEVAKFRFLN ELIKVLSPKY ENSP00000311962/1-613 HKIQSPQEKE ALYALTVLEM CMNHCGEKFH SEVAKFRFLN ELIKVLSPKY bmy_18720T0/1-542 HKIQSPQEKE ALYALTVLEV CVNHCGEKFH NEVAKFRFLN ELIKVLSPK- ENSTTRP00000004941/1-614 XXXXXXXXXX XXXXXXVLEV CVNHCGEKFH NEVA-FRFLN ELIKVLSPKY 601 650 BACU018200/1-1096 LGSWTTEKVK GRVIEILFSW TVWFPEDIKI RDAYQMLKKQ GTPLQCPLIP ENSBTAP00000003035/1-600 LGSWTTEKVK GRIIEILFSW TVWFPEDIKI RDAYQMLKNK GIIKQDPKLP ENSP00000311962/1-613 LGSWATGKVK GRVIEILFSW TVWFPEDIKI RDAYQMLKKQ GIIKQDPKLP bmy_18720T0/1-542 ---------- ---------- ---------- ---------- ----QDPKLP ENSTTRP00000004941/1-614 LGSWTTEKVK GRVIEILFSW TVWFPEDIKI RDAYQMLKKQ GIIKQDPKLP 651 700 BACU018200/1-1096 NQSV------ ---------- GECGELLTRL LKSSHPEDLQ AANRLIKNLV ENSBTAP00000003035/1-600 VDKILPPPSP WPKSSIFDAD EEKSKLLTRL LKSNHPEDLQ AANRLIKNLV ENSP00000311962/1-613 VDKILPPPSP WPKSSIFDAD EEKSKLLTRL LKSNHPEDLQ AANRLIKNLV bmy_18720T0/1-542 VDKILPPPSP WPKSSIFDAD EEKSKLLTRL LKSSHPEDLQ AANRLIKNLV ENSTTRP00000004941/1-614 VDKILPPPSP WPKSSIFDAD EEKSKLLTRL LKSNHPEDLQ AANRLIKNLV 701 750 BACU018200/1-1096 KEEQEKSEKV SKRVSAVEEV RSHVKVLQEM LSVYRRPGQA PPDQAALQVV ENSBTAP00000003035/1-600 KEEQEKSEKV SRRVSAVEEV RSHVKVLQEM LSTYRKPGQA PPDQAALQVV ENSP00000311962/1-613 KEEQEKSEKV SKRVSAVEEV RSHVKVLQEM LSMYRRPGQA PPDQEALQVV bmy_18720T0/1-542 KEEQEKSEKV SKRVSAVEEV RSHVKVLQEM LSVYRRPGQA PPDQAALQV- ENSTTRP00000004941/1-614 KEEQEKSEKV SKRVSAVEEV RSHVKVLQEM LSMYRRPGQA PPDQAALQVV 751 800 BACU018200/1-1096 YERCEKLRPT LFRLASDTTD DDDALAEVLQ ANDLLTQGVL LYKQVMEGRV ENSBTAP00000003035/1-600 YERCEKLRPT LFRLASDTTD DDEALAEILQ ANDLLTQGVL LYKQVMEGRV ENSP00000311962/1-613 YERCEKLRPT LFRLASDTTD DDDALAEILQ ANDLLTQGVL LYKQVMEGRV bmy_18720T0/1-542 ---------- ---------- --------LQ ANDLLTQGVL LYKQVMEGRV ENSTTRP00000004941/1-614 YERCEKLRPT LFRLASDTTD DDDALAEVLQ ANDLLTQGVL LYKQVMEGRV 801 850 BACU018200/1-1096 TFGNTVVSSL GDIPVSRVFQ NPAGCMKNCP LIDLEVDSGS EQAGAVARSL ENSBTAP00000003035/1-600 TFGNTVDSSV GDIPVSRVFQ NPTGCVKNCP LIDLE-DSGS EQAGAVTPSL ENSP00000311962/1-613 TFGNRVTSSL GDIPVSRVFQ NPAGCMKTCP LIDLEVDNGP AQMGTVVPSL bmy_18720T0/1-542 TFGNTVVSSL GDIPVSRVFQ NPTGCMKNCP LIDLEVDSGS EQAGTVAPSL ENSTTRP00000004941/1-614 TFGNTVVSSL GDIPVSRVFQ NPTGRMKNCP LIDLEVDSGS ELAGTVAPSL 851 900 BACU018200/1-1096 LHQDLAALGF LNILERMMVS VSSSNQVELL MCISLCSFFT GISDGPVTKK ENSBTAP00000003035/1-600 LHQDLAAL-- ---------- ---------- ---------- GISDAPATSR ENSP00000311962/1-613 LHQDLAAL-- ---------- ---------- ---------- GISDAPVTGM bmy_18720T0/1-542 LHQDLAAL-- ---------- ---------- ---------- GISDGPVTKK ENSTTRP00000004941/1-614 LHHDLAAL-- ---------- ---------- ---------- GISDGPVTKK 901 950 BACU018200/1-1096 AGTAASSTLH QDPAALAISD GPVTKTAASQ EKRNPTTSTL PGGGVQSPSA ENSBTAP00000003035/1-600 ---------- ---------- --VAGQNCCQ EKKNPTTSAL PAGGAQSPSA ENSP00000311962/1-613 ---------- ---------- --VSGQNCCE EKRNPSSSTL PGGGVQNPSA bmy_18720T0/1-542 ---------- ---------- --VASQNCGQ EKRNPTTSTL PGGGVQSPSA ENSTTRP00000004941/1-614 ---------- ---------- --VASQNCGE EKRNTTTSTL PGGGVQSPSA 951 1000 BACU018200/1-1096 ERNLLDLLSP QPSPGPLNYI PQKSIPKEVP PGTKSSPGWS WEAGPLASSP ENSBTAP00000003035/1-600 ERNLLDLLSP QPPPGSLNYI PQKSIPKEVP PGTKSSPGWS WEAGPLAPSP ENSP00000311962/1-613 DRNLLDLLSA QPAPCPLNYV SQKSVPKEVP PGTKSSPGWS WEAGPLAPSP bmy_18720T0/1-542 ERNLLDLLSP QPSPGPLNYI PQKSIPKEVP PGTKSSPGWS WEAGPLASSP ENSTTRP00000004941/1-614 ERNLLDLLSP QPSPGPLNYI PQKSIPREVP PGTKSSPGWS WEAGPLASSP 1001 1050 BACU018200/1-1096 SSQNTPLAQV FVPLESVKPS SLPPLIVYDR NGFRILLHFS QTGAPGHPEV ENSBTAP00000003035/1-600 SSQNTPLAQV FVPLESVKPS SLPPLIVYDR NGFRILLHFS QTGAPGHPEV ENSP00000311962/1-613 SSQNTPLAQV FVPLESVKPS SLPPLIVYDR NGFRILLHFS QTGAPGHPEV bmy_18720T0/1-542 SSQNTPLAQV FVPLESVKPS NLPPLIVYDR NGFRILLHFS QTGAPGHPEV ENSTTRP00000004941/1-614 SSQNTPLAQV FVPLESVKPS NLPPLIVYDR NGFRILLHFS QTGAPGHPEV 1051 1100 BACU018200/1-1096 QVLLLTMMST ATQPVWDIMF QVAVP----- ---------- ---------- ENSBTAP00000003035/1-600 QVLLLTMMST ATQPVWDIMF QVAVPKSMRV KLQPASSSKL PAFSPLTPPA ENSP00000311962/1-613 QVLLLTMMST APQPVWDIMF QVAVPKSMRV KLQPASSSKL PAFSPLMPPA bmy_18720T0/1-542 QVLLLTMMST ATQPVWDIMF QVAVPKSMRV KLQPASSSKL PAFSPLMPPA ENSTTRP00000004941/1-614 QVLLLTMMST ATQPVWDIMF QVAVPKSMRV KLQPASSSKL PAFSPLMPPA 1101 1150 BACU018200/1-1096 ---------- --KEPIRLRY KLTFNQGGQP FSEVGEVRDF PDLAVLGAA ENSBTAP00000003035/1-600 VISQMLLLDN PHKEPIRLRY KLTFNQGGQP FSEVGEVKDF PDLTVLGAA ENSP00000311962/1-613 VISQMLLLDN PHKEPIRLRY KLTFNQGGQP FSEVGEVKDF PDLAVLGAA bmy_18720T0/1-542 VISQMLLLDN PHKEPIRLRY KLTFNQGGQP FSEVGEVKDF PDLAVLGAA ENSTTRP00000004941/1-614 VISQMLLLDN PHKEPIRLRY KLTFNQGGQP FSEVGEVKDF PDLAVLGAA