KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:52 2014 Check: 00 .. Name: ENSP00000371212/1-593 Len: 595 Check: 7436 Weight: 1.00 Name: ENSBTAP00000003040/1-591 Len: 595 Check: 6222 Weight: 1.00 Name: bmy_11939T0/1-451 Len: 595 Check: 941 Weight: 1.00 Name: BACU007634/1-585 Len: 595 Check: 153 Weight: 1.00 Name: ENSTTRP00000002661/1-587 Len: 595 Check: 3407 Weight: 1.00 // 1 50 ENSP00000371212/1-593 MTAEDSTAAM SSDSAAGSSA KVPEGVAGAP NEAALLALME RTGYSMVQEN ENSBTAP00000003040/1-591 MTAEDSTAAM SSDSATGSSA KVPEGVAGAP NEAALLALME RTGYSMVQEN bmy_11939T0/1-451 MTAEDSTAAM SSESAAGSSA KVPEGVAGAP NEAALLALME RTGYSMVQEN BACU007634/1-585 MTAEDSTAAM SSESAPGSSA KVPEGVAGAP NEAALLALME RTGYSMVQEN ENSTTRP00000002661/1-587 MTAEDSTAAM SSESAAGSSA KVPEGVAGAP NEAALLALME RTGYSMVQEN 51 100 ENSP00000371212/1-593 GQRKYGGPPP GWEGPHPQRG CEVFVGKIPR DVYEDELVPV FEAVGRIYEL ENSBTAP00000003040/1-591 GQRKYGGPPP GWEGPHPQRG CEVFVGKIPR DVYEDELVPV FETVGRIYEL bmy_11939T0/1-451 GQRKYGGPPP GWEGPHPQRG CEVFVGKIPR DVYEDELVPV FETVGRIYEL BACU007634/1-585 GQRKYGGPPP GWEGPHPQRG CEVFVGKIPR DVYEDELVPV FEAVGRIYEL ENSTTRP00000002661/1-587 GQRKYGGPPP GWEGPHPQRG CEVFVGKIPR DVYEDELVPV FEVVGRIYEL 101 150 ENSP00000371212/1-593 RLMMDFDGKN RGYAFVMYCH KHEAKRAVRE LNNYEIRPGR LLGVCCSVDN ENSBTAP00000003040/1-591 RLMMDFDGKN RGYAFVMYCH KNEAKRAVRE LNNYEIRPGR LLGVCCSVDN bmy_11939T0/1-451 RLMMDFDGKN RGYAFVMYCH KHEAKRAVRE LNNYEIRPGR LLGVCCSVDN BACU007634/1-585 RLMMDFDGKN RGYAFVMYCH KHEAKRAVRE LNNYEIRPGR LLGVCCSVDN ENSTTRP00000002661/1-587 RLMMDFDGKN RGYAFVMYCH KHEAKRAVRE LNNYEIRPGR LLGVCCSVDN 151 200 ENSP00000371212/1-593 CRLFIGGIPK MKKREEILEE IAKVTEGVLD VIVYASAADK MKNRGFAFVE ENSBTAP00000003040/1-591 CRLFIGGIPK MKKREEILEE IAKVTEGVLD VIVYASAADK MKNRGFAFVE bmy_11939T0/1-451 CRLFIGGIPK MKKREEILEE IAKVTEGVLD VIVYASAADK MKNRGFAFVE BACU007634/1-585 CRLFIGGIPK MKKREEILEE IAKVTEGVLD VIVYASAADK MKNRGFAFVE ENSTTRP00000002661/1-587 CRLFIGGIPK MKKREEILEE IAKVTEGVLD VIVYASAADK MKNRGFAFVE 201 250 ENSP00000371212/1-593 YESHRAAAMA RRKLMPGRIQ LWGHQIAVDW AEPEIDVDED VMETVKILYV ENSBTAP00000003040/1-591 YESHRAAAMA RRKLMPGRIQ LWGHQIAVDW AEPEIDVDED VMETVKILYV bmy_11939T0/1-451 YESHRAAAMA RRKLMPGRIQ LWGHQIAVDW AEPEIDVDED VMETVKILYV BACU007634/1-585 YESHRAAAMA RRKLMPGRIQ LWGHQIAVDW AEPEIDVDED VMETVKILYV ENSTTRP00000002661/1-587 YESHRAAAMA RRKLMPGRIQ LWGHQIAVDW AEPEIDVDED VMETVKILYV 251 300 ENSP00000371212/1-593 RNLMIETTED TIKKSFGQFN PGCVERVKKI RDYAFVHFTS REDAVHAMNN ENSBTAP00000003040/1-591 RNLMIETTED TIKKSFGQFN PGCVERVKKI RDYAFVHFAS REDAVHAMNN bmy_11939T0/1-451 RNLMIETTED TIKKSFGQFN PGCVERVKKI RDYAFVHFAS REDAVHAMNN BACU007634/1-585 RNLMIETTED TIKKSFGQFN PGCVERVKKI RDYAFVHFAS REDAVHAMNN ENSTTRP00000002661/1-587 RNLMIETTED TIKKSFGQFN PGCVERVKKI RDYAFVHFAS REDAVHAMNN 301 350 ENSP00000371212/1-593 LNGTELEGSC LEVTLAKPVD KEQYSRYQKA ARGGGAAEAA --QQPSYVYS ENSBTAP00000003040/1-591 LNGTELEGSC LEVTLAKPVD KEQYSRYQKA AKGGGAAEAA VVQQPSYVYS bmy_11939T0/1-451 LNGTELEGSC LEVTLAKPVD KEQYSRYQKA AKGGGAAEAA MVQQPSYVYS BACU007634/1-585 LNGTELEGSC LEVTLAKPVD KEQYSRYQKA AKGGGAAEAA MVQQPSYVYS ENSTTRP00000002661/1-587 LNGTELEGSC LEVTLAKPVD KEQYSRYQKA AKGGGAAEAA VVQQPSYVYS 351 400 ENSP00000371212/1-593 CDPYTLAYYG YPYNALIGPN RDYFVKAGSI RGRGRGAAGN RAPGPRGSYL ENSBTAP00000003040/1-591 CDPYTLAYYG YPYNALIGPN RDYFVKAGSI RGRGRGAAGN RAPGPRGSYL bmy_11939T0/1-451 CDPYTLAYYG YPYNALIGPN RDYFVKAGSI RGRGRGAAGN RAPGPRGSYL BACU007634/1-585 CDPYTLAYYG YPYNALIGPN RDYFVKAGSI RGRGRGAAGN RAPGPRGSYL ENSTTRP00000002661/1-587 CDPYTLAYYG YPYNALIGPN RDYFVKAGSI RGRGRGAAGN RAPGPRGSYL 401 450 ENSP00000371212/1-593 GGYSAGRGIY SRYHEGKGKQ QEKGYELVPN LEIPTVNPVA IKPGTVAIPA ENSBTAP00000003040/1-591 GGYSAGRGIY SRYHEGKGKQ QEKGYELVPN LEISAVNPVA IKPGTVAIPA bmy_11939T0/1-451 GGYSAGRGIY SRYHEGKGKQ QEKGYELVPN LEISAVNPVA IKPGT----- BACU007634/1-585 GGYSAGRGIY SRYHEGKGKQ QEKGYELVPN LEISAVNPVA IKPGTVAIPA ENSTTRP00000002661/1-587 GGYSAGRGIY SRYHEGKGKQ QEKGYELVPN LEISAVNPVA IKPGTVAIPA 451 500 ENSP00000371212/1-593 IGAQYSMFPA APAPKMIEDG KIHTVEHMIS PIAVQPDPAS AAAAAAAAAA ENSBTAP00000003040/1-591 IGAQYSMFQA APAPKMIEDG KIHTMEHMIS PIAVQPDPAS ----AAAAAA bmy_11939T0/1-451 ---------- ---------G Q--------- ---------- ---------- BACU007634/1-585 IGAQYSMFQA APAPKMIEDG KIHTMEHMIS PIAVQPDP-- ------AAAA ENSTTRP00000002661/1-587 IGAQYSMFQA APAPKMIEDG KIHTMEHMIS PIAVQPDPAS ------AAAA 501 550 ENSP00000371212/1-593 AAAAVIPTVS TPPPFQGRPI TPVYTVAPNV QRIPTAGIYG ASYVPFAAPA ENSBTAP00000003040/1-591 AAAAVIPAVS TPPPFQGRPI TPVYTVAPNV QRIPTAGIYG ASYVPFAAPA bmy_11939T0/1-451 ---------- ---------- ---------- ---------- ---------- BACU007634/1-585 AAAAVIPAVS TPPPFQGRPI TPVYTVAPNV QRIPAAGIYG ASYVPFAAPT ENSTTRP00000002661/1-587 AAAAVIPAVS TPPPFQGRPI TPVYTVAPNV QRIPAAGIYG ASYVPFAAPT 551 600 ENSP00000371212/1-593 TATIATLQKN AAAAAAMYGG YAGYIPQAFP AAAIQVPIPD VYQTY ENSBTAP00000003040/1-591 TATIATLQKN AAAAAAMYGG YAGYIPQAFP AAAIQVPIHD VYQTY bmy_11939T0/1-451 ---------- ---------- ---YKPE--- ---------- ----- BACU007634/1-585 TATIATLQKN --AAAAVYSG YAGYIPQAFP AAAIQVPIHD VYQTY ENSTTRP00000002661/1-587 TATIATLQKN --AAAAVYSG YAGYIPQAFP AAAIQVPIHD VYQTY