KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:54 2014 Check: 00 .. Name: ENSP00000385923/1-461 Len: 523 Check: 2760 Weight: 1.00 Name: ENSBTAP00000003073/1-474 Len: 523 Check: 716 Weight: 1.00 Name: bmy_06408T0/1-441 Len: 523 Check: 3508 Weight: 1.00 Name: BACU002196/1-470 Len: 523 Check: 6327 Weight: 1.00 Name: ENSTTRP00000001175/1-420 Len: 523 Check: 5119 Weight: 1.00 // 1 50 ENSP00000385923/1-461 MPPSGPRGTL LLLPLLLLLL LRAVLAVPLE RGAPNKEETP ATESPDTGLY ENSBTAP00000003073/1-474 MPPSGPRAAL FLLP--SLLL LRAVLAVPLE RGAP-KEENP ATESPDTGLY bmy_06408T0/1-441 MPPAGPRAAL LLLS--LLLL LRAILTVPLE RGAP-KKENP ATESPDTGLY BACU002196/1-470 MPPAGPRAAL LLLS--LLLL LRAILTVPLE RGAP-KKENP ATESPDTGLY ENSTTRP00000001175/1-420 MPPAGPRAAL LLLS--LLLL LRAILTVPLE RGAP-KEENP ATESPDTGLY 51 100 ENSP00000385923/1-461 YHRYLQEVID VLETDGHFRE KLQAANAEDI KSGKLSRELD FVSHHVRTKL ENSBTAP00000003073/1-474 YHRYLQEVIN VLETDGHFRE KLQAANAEDI KSGKLSRELD FVSHHVRTKL bmy_06408T0/1-441 YHRYLQEVIN VLETDGHFRE KLQAANAEDI KSGKLSRELD FVSHHVRTKL BACU002196/1-470 YHRYLQEVIN VLETDGHFRE KLQAANAEDI KSGKLSRELD FVSHHVRTKL ENSTTRP00000001175/1-420 YHRYLQEVIN VLETDGHFRE KLQAANAEDI KSGKLSRELD FVSHHVRTKL 101 150 ENSP00000385923/1-461 DELKRQEVSR LRMLLKAKMD AEQDPNVQVD HLNLLKQFEH LDPQNQHTFE ENSBTAP00000003073/1-474 DELKRQEVSR LRMLLKAKMD AQQEPNIQLD HLNLLKQFEH LDPQNQHTFE bmy_06408T0/1-441 DELKRQEVSR LRMLLKAKMD TQQEPNVQLD HLSLLKQFEH LDPQNQHTFE BACU002196/1-470 DELKRQEVSR LRMLLKAKMD AQQEPNVQLD HLSLLKQFEH LDPQNQHTFE ENSTTRP00000001175/1-420 DELKRQEVSR LRMLLKAKMD AQQEPNVQLD HLSLLKQFEH LDPQNQHTFE 151 200 ENSP00000385923/1-461 ARDLELLIQT ATRDLAQYDA AHHEEFKRYE MLKEHERRRY LESLGEEQRK ENSBTAP00000003073/1-474 ARDLELLIQT ATRDLAQYDA AHHEEFKRYE MLKEHERRRY LESLGEEQRK bmy_06408T0/1-441 ARDLELLIQT ATRDLAQYDA AHHEEFKRYE MLKEHERRRY LESLGEEQRK BACU002196/1-470 ARDLELLIQT ATRDLAQYDA AHHEEFKRYE MLKEHERRRY LESLGEEQRK ENSTTRP00000001175/1-420 ARDLELLIQT ATRDLAQYDA AHHEEFKRYE MLKEHERRRY LESLGEEQRK 201 250 ENSP00000385923/1-461 EAERKLEEQQ RRHREHPKVN VPGSQAQLKE VWEELDGLDP NRFNPKTFFI ENSBTAP00000003073/1-474 EAERKLEEQQ RRHREHPKVN VPGSQAQLKE VWEELDGLDP NRFNPKTFFI bmy_06408T0/1-441 EAERKLEEQQ RRHREHPKVN VPGSQAQLKE VWEELDGLDP NRFNPKTFFI BACU002196/1-470 EAERKLEEQQ RRHREHPKVN VPGSQAQLKE VWEELDGLDP NRFNPKTFFI ENSTTRP00000001175/1-420 EAERKLEEQQ RRHREHPKVN VPGSQAQLKE VWEELDGLDP NRFNPKTFFI 251 300 ENSP00000385923/1-461 LHDINSDGVL DEQELEALFT KE-------- -----LEKVY DPKNEEDDMR ENSBTAP00000003073/1-474 LHDINSDGVL DEQELEALFT KE-------- -----LEKVY DPKNEDDDMR bmy_06408T0/1-441 LHDINSDGVL DEQELEALFT KEVSILEAMG AEDAQLEKVY DPKNEEDDMR BACU002196/1-470 LHDINSDGVL DEQELEALFT KEVSILEAMG AEDAQLEKVY DPKNEEDDMR ENSTTRP00000001175/1-420 LHDINSDGVL DEQELEALFT KE-------- -----LEKVY DPKNEEDDMR 301 350 ENSP00000385923/1-461 EMEEERLRMR EHVMKN---- ---------- ---------- ------VDTN ENSBTAP00000003073/1-474 EMEEERLRMR EHVMKN---- ---------- ---------- ------VDTN bmy_06408T0/1-441 EMEEERLRMR EHVMKNVRGG TRAVGEGGGR GGGRSSSVAY PYLAPQVDTN BACU002196/1-470 EMEEERLRMR EHVMKN---- ---------- ---------- ------VDTN ENSTTRP00000001175/1-420 EMEEERLRMR EHVMKN---- ---------- ---------- ------VDTN 351 400 ENSP00000385923/1-461 QDRLVTLEEF LASTQRKEFG DTGEGWE--- ---------- ----TVEMHP ENSBTAP00000003073/1-474 QDRLVTLEEF LASTQRKEFG DTGEGWEQGK AGVPLPMAPV LTLQTVEMHP bmy_06408T0/1-441 QDRLVTLEEF LVSTQRKEFG DTGEGWE--- ---------- ----TVEMHP BACU002196/1-470 QDRLVTLEEF LVSTQRKEFG DTGEGWE--- ---------- ----TVEMHP ENSTTRP00000001175/1-420 QDRLVTLEEF LVSTQRKEFG DTGEGWE--- ---------- ----TVEMHP 401 450 ENSP00000385923/1-461 AYTEEELRRF EEELAAREAE LNAKAQRLSQ ETEALGRSQG RLEAQKRELQ ENSBTAP00000003073/1-474 AYTEEELRRF EEELAAREAE LNAKAQRLSQ ETEALGRSQG RLEAQKRELQ bmy_06408T0/1-441 AYTEDELRRF EEELAAREAE LNAKAQRLSQ ETEALGRSQG RLEAQKRELQ BACU002196/1-470 AYTEDELRRF EEELAAREAE LNAKAQRLSQ ETEALGRSQG RLEAQKRELQ ENSTTRP00000001175/1-420 AYTEDELRRF EEELAAREAE LNAKAQRLSQ ETEALGRSQG RLEAQKRELQ 451 500 ENSP00000385923/1-461 QAVLHMEQRK QQQQQQQGHK APAAHPEGQL KFHPDTDDVP VPAPAGDQKE ENSBTAP00000003073/1-474 QAVLQMEQRK QQQQS---HN NPAPGPEGQL KFHPDTDDVP VPAPAGDQKD bmy_06408T0/1-441 QVT------- ---------- -------GQG R--------- ---------- BACU002196/1-470 QAVLQMEQRK QQQQV---HN NPAPGPEGQL KFHPDTDDAP VPAPAGDQKD ENSTTRP00000001175/1-420 QAVLQMEQRK QQQQV---HN NPAPGPEGQL KFHPDT---- ---------- 501 550 ENSP00000385923/1-461 VDTSEKKLLE RLPEVEV--P QHL ENSBTAP00000003073/1-474 VDASEKKVPE QTPEPPQLDS QHL bmy_06408T0/1-441 ---------- ---------G SIL BACU002196/1-470 VDPSEKKVPE QTPELPQLES QHL ENSTTRP00000001175/1-420 ---------- ---------- ---