KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:55 2014 Check: 00 .. Name: ENSP00000268314/1-935 Len: 947 Check: 5960 Weight: 1.00 Name: ENSBTAP00000003076/1-940 Len: 947 Check: 3110 Weight: 1.00 Name: bmy_00713T0/1-944 Len: 947 Check: 5621 Weight: 1.00 Name: ENSTTRP00000011843/1-777 Len: 947 Check: 67 Weight: 1.00 // 1 50 ENSP00000268314/1-935 --MAAAKPTL TDSLSFCLAQ LAAAAGEALG GEKDPATNET PLSRALLALR ENSBTAP00000003076/1-940 AKMAAAKSTP TDSLSFCLAQ LTAAAGEGLG GRKDTATSET PLGRALLALR bmy_00713T0/1-944 --MAAAKLSP ADSLSFCLAQ LTAAAGEGLG GGKDTATNET PLGRALLALR ENSTTRP00000011843/1-777 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000268314/1-935 TRHIKAAGGI ERFRARGGLR PLLALLRRAA AAGSAPSQAG PGSAPSSAAS ENSBTAP00000003076/1-940 TRHVKAAGGI ERFRARGGLR PLLALLRRAA AAGPAPSQAG AGSAPSSVES bmy_00713T0/1-944 TRHVKAAVGI ERFRARGGLR PLLALLRRAA AAGPAPSQAG PGSAPSSVES ENSTTRP00000011843/1-777 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000268314/1-935 GASS-PAPAS GPAPSAVSSS SPTPPVRLRK TLDLALSILA DCCTEGACRT ENSBTAP00000003076/1-940 AASSGPAPSP GSAPSAASPA TPSPPARLRK TLDLALSILA NCCTEGACRA bmy_00713T0/1-944 AASSGPAPSP GPAPSAASSS SPSPPTRLRK TLDLALSVLA NCCTEGECRA ENSTTRP00000011843/1-777 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000268314/1-935 EVRRLGGILP LVTILQCMKT DSIQNRTARA LGNLAMEPES CGDIHCAGAV ENSBTAP00000003076/1-940 EVRRLGGILP LVTILQCVKT DSIQNRTARA LGNLAMEPES CGDIHCAGAV bmy_00713T0/1-944 EVRRLGGIIP LVTILQCVKT DSIQNRTARA LGNLAMEPES CGDIHSAGAV ENSTTRP00000011843/1-777 ---------- -------VKT DSIQNRTARA LGNLAMEPES CGDIHSAGAV 201 250 ENSP00000268314/1-935 PLLVESLTAC QDSQCLQSVV RALRNLADSP QHRLALAQQG AVRPLAELLA ENSBTAP00000003076/1-940 PLLVESLTAC QDSQCRQSVV RALRNLADSP QHRLALAQQG AVRPLAELLA bmy_00713T0/1-944 PLLVEGLTAC QDSQCRQSVV RALRNLADSP QHRLALAKQG AVRPLAELLA ENSTTRP00000011843/1-777 PLLVEGLTAC QDSQCRQSVV RALRNLADSP QHRLALAKQG VVRPLAELLA 251 300 ENSP00000268314/1-935 TAPDAALTLA LVRALLELSR GCSRACAEQL SLGGGLGPLV SLASHPKRAV ENSBTAP00000003076/1-940 AAPDPALTLA LVRALLELSR GCSRACAEQL SLGGGLGPLV GLASHPKRAV bmy_00713T0/1-944 AAPDPAMTLA LVRALLELSR GCSRACAEQL SLGGGLGPLV SLASHPKRAV ENSTTRP00000011843/1-777 AAPDPALTLA LVRALLELSR GCSRACAEQL SLGGGLGPLV SLASHPKRAV 301 350 ENSP00000268314/1-935 REGTILILAN LCAQGLIRPA LGNAGGVEVL VDELRQRRDP NGASPTSQQP ENSBTAP00000003076/1-940 REATILILAN LCAQGLVRPA LGNAGGVEVL LGELRRRRGL NGASPASQQP bmy_00713T0/1-944 REAAILILAN LCAQGLVRPA LGSAGGVEVL LGELRRRRGP SGASPASQQP ENSTTRP00000011843/1-777 REAAILILAN LCAQGLVRPA LGNAGAVEVL LGELRRRRDP SGASPASQQP 351 400 ENSP00000268314/1-935 LVRAVCLLCR EAINRARLRD AGGLDLLMGL LRDPRASAWH PRIVAALVGF ENSBTAP00000003076/1-940 LVRAVCLLCR EAINRARLRD AGGLELLMGL LRDPRASAWH PRVVAALVGF bmy_00713T0/1-944 LVRAVCLLCR EAINRARLRD AGGLELLMGL LRDPRASAWH PRVVAALVGF ENSTTRP00000011843/1-777 LVRAVCLLCR EAINRARLRD AGGLELLMGL LRDPRASAWH PRVVAALVGF 401 450 ENSP00000268314/1-935 LYDTGALGRL QALGLVPLLA GQLCGEAGEE EEEGREAASW DFPEERTPER ENSBTAP00000003076/1-940 LYDTGALGRL QALGLVPLLA GQLCGEAGDE EEEGREAASW DFPEERTPER bmy_00713T0/1-944 FYDTGALGRL QALGLVPLLA GQLCGEAGDE EEEGREAASW DFPEERTPER ENSTTRP00000011843/1-777 LYDTGALGRL QALGLVPLLA GQLCGEAGDE EEEGREAASW DFPEERTPER 451 500 ENSP00000268314/1-935 AQGGSFRSLR SWLISE-GYA TGPDDISPDW SPEQCP--PE PMEPASPAPT ENSBTAP00000003076/1-940 AEAGSFRSLQ QSGIAERGWG AGPGDISPDW YPECCPHPPE PADLTS---- bmy_00713T0/1-944 AEAGSFQSLR SWLISE-GYA ADPGDISPEW SPERCPPPPE PASRASPSLG ENSTTRP00000011843/1-777 AEAGSFQSLR SWLISE-GYA AGPGDISPDW SPERCPPPPE PASRASPSLG 501 550 ENSP00000268314/1-935 PTSLRAPRTQ RTPGRSPAA- AIEEPWGREG PALLLLSRFS QAPDPSGALV ENSBTAP00000003076/1-940 PTSLQTPRTK RPPDRNPTAS AAEEPWGREG PALLLLSRFS QAPDPSGALV bmy_00713T0/1-944 PTLLRTPRAL RPAGRSPTTT APEEPWGREG PALLLLSRFS QAPDPSGALV ENSTTRP00000011843/1-777 PTSLRTPRAL RPPGRSPAAT APEEPWSREG PALLLLSRFS QAPDPSGALV 551 600 ENSP00000268314/1-935 TGPALYGLLT YVTGAPGPPS PRALRILSRL TCNPACLEAF VRSYGAALLR ENSBTAP00000003076/1-940 TGPALCGLLA YVTGAPGPPS PRALRILARL TCNPACLEAF VRSYGAALLR bmy_00713T0/1-944 TGPALCGLLA YVTGAPGSPS PRAFRILARL TCNPACLEAF VRSYGAALLR ENSTTRP00000011843/1-777 TGQALCGLLA YVTGAPGSPS PRALRILARL TCNPACLEAF VRSYGAALLR 601 650 ENSP00000268314/1-935 AWLVLGVAPD DWPAPRARPT LHS--RHREL GERLLQNLTV QAESPFGVGA ENSBTAP00000003076/1-940 AWLVLGVAPD DWPALRTRQA RRSQHQHREL GEMLLQNLTV QAESPFGVGA bmy_00713T0/1-944 AWLVLGVAPD DWPALRTRPA RRSQHQHREL GEMLLQNLTV QAESPFGVGA ENSTTRP00000011843/1-777 AWLVLGVAPD DWPALRARPA RRSQHQHREL GEMLLQNLTV QAESPFGVGA 651 700 ENSP00000268314/1-935 LTHLLLSGSP EDRVACALTL PFICRKPSLW RRLLLEQGGL RLLLAALTRP ENSBTAP00000003076/1-940 LTHLLLSGSP EDRVACALTL PFICRKPSLW RRLLLDQGGL RLLLSALTRP bmy_00713T0/1-944 LTHLLLSGSP EDRVACALTL PFICRKPSLR RRLLLDQGGL RLLLSALTGP ENSTTRP00000011843/1-777 LTHLLLSGSP EDRVACALTL PFICRKPSLW RRLLLDQGGL RLLLSALTRP 701 750 ENSP00000268314/1-935 APHPLFLFFA ADSLSCLQDL VSPTVSPAVP QAVPMDLDSP SPCLYEPLLG ENSBTAP00000003076/1-940 APHPLFLFFA ADSLSCLQGL VSPTGSPAIL PAIPLDLDPP SPCLYEPLLG bmy_00713T0/1-944 APHPLFLFFA ADSLSCLQGL VSPTVSPALL PAIPLDLDPP SPCLYEPLLG ENSTTRP00000011843/1-777 APHPLFLFFA ADSLSCLQGL VSPTVSPALL PAIPLDLDPP SPCLYEPLLG 751 800 ENSP00000268314/1-935 PAPVPAPDLH FLLDSGLQLP AQRAASATAS PFFRALLSGS FAEAQMDLVP ENSBTAP00000003076/1-940 PAPMPAPDLH FLLDSGLRLP AQRAASATAS PFFRALLAGS FAEAQMDLVP bmy_00713T0/1-944 PAPTPAPDLH FLLDSGLRLP AQRAASANAS PFFRALLAGS FAEAHMDLVP ENSTTRP00000011843/1-777 PAPTAAPDLH FLLDSGLQLP AQRAASATAS PFFRALLAGS FAEAHMDLVP 801 850 ENSP00000268314/1-935 LRGLSPGAAW PVLHHLHGCR GCGAALGPVP PPGQPLLGSE AEEALEAAGR ENSBTAP00000003076/1-940 LRGLSPSAAW PILHHLHGCR GCGAALGPVP PPGQPLLGSE AEEALEAAGR bmy_00713T0/1-944 LRGLSPSAAW PVLHHLHGCR GCGATLGPVP PPGQPLLGSE AEEALEAAGR ENSTTRP00000011843/1-777 LRGLSPSAAW PVLHYLHGCR GCRAALGPVP PPGQRLLGSE AEEALEAAGR 851 900 ENSP00000268314/1-935 FLLPGLEEEL EEAVGRIHLG PQGGPESVGE VFRLGRPRLA AHCARWTLGS ENSBTAP00000003076/1-940 FLLPGLEEEL EEAVGRIHLG PQGGPESVGE VFRLGRPRLA AHCARWTLGP bmy_00713T0/1-944 FLLPGLEEEL EEAVGRIHLG PQGGPESVGE VFRLGRPRLA AHCARWTLSP ENSTTRP00000011843/1-777 FLLPGLEEEL EEAVGRIHLG PQGGPESVGE VFRLGRPRLA AHCARWILGP 901 950 ENSP00000268314/1-935 EQCPRKRGLA LVGLVEAAGE EAGPLTEALL AVVMGIELGA RVPA--- ENSBTAP00000003076/1-940 GQCPRKRALA LVGLVEAAGE EAGPLTEALL AVVMGVESGG KGPS--- bmy_00713T0/1-944 GQCPRKRALA LVGLVEAAGD EAGPLTEAFL AVMMGVELGG EGPSLDG ENSTTRP00000011843/1-777 GQCPRKRALA LVGLVEAAGD EAGPLTEAFL AVMMGVELGA RVPAS--