KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:57 2014 Check: 00 .. Name: ENSP00000337340/1-194 Len: 261 Check: 9376 Weight: 1.00 Name: ENSBTAP00000003099/1-244 Len: 261 Check: 3684 Weight: 1.00 Name: ENSTTRP00000001970/1-195 Len: 261 Check: 938 Weight: 1.00 Name: bmy_17548T0/1-261 Len: 261 Check: 4651 Weight: 1.00 Name: BACU017246/1-244 Len: 261 Check: 2197 Weight: 1.00 // 1 50 ENSP00000337340/1-194 ---------- -------MEN FTALFGAQAD PPPPPTALGF GPGKPPPPPP ENSBTAP00000003099/1-244 ---------- -------MEN FTALFGAQAD PPPPPAALGF GPGKPPPPPP ENSTTRP00000001970/1-195 ---------- -------MEN FTALFGAQAD PPPPPTALGF GAGKPPPPPP bmy_17548T0/1-261 MKIINARHRD SAGAEGTMEN FTALFGAQAD PPPPPTALGF GAGKPPPPPP BACU017246/1-244 ---------- -------MEN FTALFGAQAD PPPPPTALGF GAGKPPPPPP 51 100 ENSP00000337340/1-194 PPAGGGPGTA PPPTAATAPP GADKSGAGCG PFYLMRELPG STELTGSTNL ENSBTAP00000003099/1-244 PPPGGGPGPA PPPTAASAPP GSDKSAAGCG PFYLMRELPG STELTGSTNL ENSTTRP00000001970/1-195 PPPGGGPGPA PPPTAASAPS GADKSAAGCG PFYLMRELPG STELTGSTNL bmy_17548T0/1-261 PPPGGGPGPA PPPTAASAPS GADKSAAGCG PFYLMRELPG STELTGSTNL BACU017246/1-244 PPPGGGPGPA APPTAASAPS GADKSAAGCG PFYLMRELPG STELTGSTNL 101 150 ENSP00000337340/1-194 ITHYNLEQAY NKFCGKKVKE KLSNFLPDLP GMIDLPGSHD NSSLRSLIEK ENSBTAP00000003099/1-244 ITHYNLEHAY NKFCGKKVKE KLSNFLPDLP GMIDLPGSHD NSSLRSLIEK ENSTTRP00000001970/1-195 ITHYNLEHAY NKFCGKKVKE KLSNFLPDLP GMIDLPGSHD NSSLRSLIEK bmy_17548T0/1-261 ITHYNLEHAY NKFCGKKVKE KLSNFLPDLP GMIDLPGSHD NSSLRSLIEK BACU017246/1-244 ITHYNLEHAY NKFCGKKVKE KLSNFLPDLP GMIDLPGSHD NSSLRSLIEK 151 200 ENSP00000337340/1-194 PPILSSSFNP ITGTMLAGFR LHTGPLPEQC RLMHIQPPKK KNKHKHKQSR ENSBTAP00000003099/1-244 PPILGGSFNP ITGTMLAGFR LHTGPLPEQC RLMHIQPPKK KNKQKHKQSR ENSTTRP00000001970/1-195 PPILGGSFNP ITGTMLAGFR LHTGPLPEQC RLMHIQPPKK KNKQKHKQSR bmy_17548T0/1-261 PPILGGSFNP ITGTMLAGFR LHTGPLPEQC RLMHIQPPKK KNKQKHKQSR BACU017246/1-244 PPILGGSFNP ITGTMLAGFR LHTGPLPEQC RLMHIQPPKK KNKQKHKQSR 201 250 ENSP00000337340/1-194 TQDPVPPGKP S--------- ---------- ---------- ---------- ENSBTAP00000003099/1-244 TQDPVPPETP SDSDHKKKKK KKEEDPERKR KKKEKKKKKN RHSPEHPGMG ENSTTRP00000001970/1-195 TQDPVPPVKP SQ-------- ---------- ---------- ---------- bmy_17548T0/1-261 TQDPVPPETP SDSDHKKKKK KKEEDPERKR KKKEKKKKKN RHSPDHPGVG BACU017246/1-244 TQDPVPPETP SDSDHKKKKK KKEEDPERKR KKKEKKKKKN RHSPDHPGVG 251 300 ENSP00000337340/1-194 ---------- - ENSBTAP00000003099/1-244 SSQASSSSSL R ENSTTRP00000001970/1-195 ---------- - bmy_17548T0/1-261 SSQASSSSSL R BACU017246/1-244 SSQASSSSSL R