KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:19:58 2014 Check: 00 .. Name: ENSTTRP00000004417/1-930 Len: 1206 Check: 7205 Weight: 1.00 Name: ENSP00000296051/1-1004 Len: 1206 Check: 841 Weight: 1.00 Name: BACU018934/1-933 Len: 1206 Check: 2466 Weight: 1.00 Name: bmy_17317T0/1-1079 Len: 1206 Check: 7433 Weight: 1.00 Name: ENSBTAP00000003112/1-1003 Len: 1206 Check: 8641 Weight: 1.00 // 1 50 ENSTTRP00000004417/1-930 ---------- ---------- ---------- ---------- ---------- ENSP00000296051/1-1004 MVQLYNLHPF GSQQVVPCKL EPDRFCGGGR DALFVAAGCK VEAFAVAGQE BACU018934/1-933 ---------- ---------- ---------- ---------- ---------- bmy_17317T0/1-1079 ---------- ---------- -----MSGER ---------- ---------- ENSBTAP00000003112/1-1003 MVQLYNLHPF GSQQVVPCKL EPERFCGGGR DTLFVAAGCK VEAFTVVGQE 51 100 ENSTTRP00000004417/1-930 ---------- ---------- ---DYLVAIE EKNKATFLRA YVNWRSKRTE ENSP00000296051/1-1004 LCQPRCAFST LGRVLRLAYS EAGDYLVAIE EKNKATFLRA YVNWRNKRTE BACU018934/1-933 ---------- ---------- ---DYLVAIE EKNKATFLRA YVNWRSKRTE bmy_17317T0/1-1079 ---------- ---------- -TGDYLVAIE EKNKATFLRA YVNWRSKRTE ENSBTAP00000003112/1-1003 LCQPRCVFST LGRVLRLAYS EAGDYLVAIE EKNKATFLRA YVNWRSKRTE 101 150 ENSTTRP00000004417/1-930 NSRVCIRMVG HDVEAPFSET FRDQMSIVEM PLSEAPLCIS CCPVKGDLLV ENSP00000296051/1-1004 NSRVCIRMIG HNVEGPFSKA FRDQMYIIEM PLSEAPLCIS CCPVKGDLLV BACU018934/1-933 NSRVCIRMVG HDVEAPFSET FRDQMSIVEM PLSEAPLCIS CCPVKGDLLV bmy_17317T0/1-1079 NSRVCIRMVG HDVEAPFSET FRDQMSIVEM PLSEAPLCIS CCPVKGDLLV ENSBTAP00000003112/1-1003 NSRVCIRMVG HDVEAPFSET FRDQMSIVEM PLSEAPLCIS CCPVKGDLLV 151 200 ENSTTRP00000004417/1-930 GCTNKLVLFS LKYQIINGEF SILDFERSLI IHIDNITPVE ISFCIGYVAV ENSP00000296051/1-1004 GCTNKLVLFS LKYQIINEEF SLLDFERSLI IHIDNITPVE VSFCVGYVAV BACU018934/1-933 GCTNKLVLFS LKYQIINEEF SILDFERSLI IHIDNITPVE ISFCIGYVAV bmy_17317T0/1-1079 GCTNKLVLFS LKYQIVSEEF SILDFERSLI IHIDNITPVE ISFCIGYVAV ENSBTAP00000003112/1-1003 GCTNNLVLFS LKYQIINEEF SILDFERSLV IHIDNITPAE ISFCVGYVAV 201 250 ENSTTRP00000004417/1-930 VSDLEVLILK LESDPKNGER VNRHPRKTNN PVKLS-EDIS NETLQLESDD ENSP00000296051/1-1004 MSDLEVLIVK LESGPKNGER VHHHPHKTNN RIRRTEEGIS NEISQLESDD BACU018934/1-933 MSDLEVLILK LESDPKNGES VNHHPRKTNN PVKLS-EDIS NETLQLESDD bmy_17317T0/1-1079 MSDLEVLILK LESDPKNGES VNHHPRKTNN PVKLS-EDIS NETLQLESDD ENSBTAP00000003112/1-1003 MSELEVLIVK LESDPKNRES VNYRPHKTTN PTKQA-EGIS NETSQLESDD 251 300 ENSTTRP00000004417/1-930 FVICQKPMEL LGEKSKQSGI AVTLESTGLA DEKIKYFHVQ HLLYRRFAPD ENSP00000296051/1-1004 FVICQKPLEL LGEKSEQSGL SVTLESTGLA DEKRKYSHFQ HLLYRRFAPD BACU018934/1-933 FVICQKPMEL LGEKSEQSGV SVTLESTGLA DEKIKYFHVQ HLLYRRFAPD bmy_17317T0/1-1079 FVICQKPMEL LGEKSEQSGV SVTLESTGLA DEKIKYFHVQ HLLYRRFAPD ENSBTAP00000003112/1-1003 FVICQKPMEL LGEKSKQSGI SVTLESTGLA DEKIKYFHVR HLLYRRFAPD 301 350 ENSTTRP00000004417/1-930 ISSCVLSDDI KLHSLQLLPI YQTGSLTSER KHSSQEKELL SLFCFFSLPH ENSP00000296051/1-1004 ISSYVLSDDI KLHSLQLLPI YQTGSLTSDG KNLSQEKELL SLFCFFSLPH BACU018934/1-933 ISSYVLSDDI KLHSLQLLPI YQTGSLTSER KNSSQEKELL SLFCFFSLPH bmy_17317T0/1-1079 ISSYVLSDDI KLHSLQLLPI YQT------- ---------- ---------- ENSBTAP00000003112/1-1003 ISSCLLSDDV RLHSLQLLPI YQTGSLTSDR KNSSQEKVLL SLFCFFSLPH 351 400 ENSTTRP00000004417/1-930 VGYLYMVVKS VELMSVYQYP EKSQQAVLTP QFLHVITSNN LQCYTVRCSA ENSP00000296051/1-1004 VGYLYMVVKS VELMSVYQYP EKSQQAVLTP QFLHVITSNN LQCFTVRCSA BACU018934/1-933 VGYLYMVVKS VELMSVYQYP EKSQQAVLTP QFLHVITSNN LQCYTVRCSA bmy_17317T0/1-1079 ---------- -----VYQYP EKSQQAVLTP QFLHVITSNN LQCYTVRCSA ENSBTAP00000003112/1-1003 VGYLYMIVKS VELLSVYQYP EKSQQAVLTP QFLHVITSNN LQCYTVRCSA 401 450 ENSTTRP00000004417/1-930 AAAREEDPYV DTTLKACPPV SMDVCALRIQ LFIGLKAICH FKNHIILLTK ENSP00000296051/1-1004 AAAREEDPYM DTTLKACPPV SMDVCALRIQ LFIGLKAICH FKNHIILLTK BACU018934/1-933 AAAREEDPYV DTTLKACPPV SMDVCALRIQ LFIGLKAICH FKNHVILLTK bmy_17317T0/1-1079 AAAREEDPYV DTTLKACPPV SMDVCALRIQ LFIGLKAICH FKNHVILLTK ENSBTAP00000003112/1-1003 AAAREEDPYV DTTLKACPPI SMAVCALRIQ LFIGLKAICH FKNHVVLLTK 451 500 ENSTTRP00000004417/1-930 ADPETIPERR ESPKRLLSRK GTSVNLKTPP VAEAGWNLYI VNTISPVQLY ENSP00000296051/1-1004 AEPEAIPERR QSPKRLLSRK DTSVKIKIPP VAEAGWNLYI VNTISPVQLY BACU018934/1-933 ADPETIPERR ESPKRLLSRK GTSVNLKTPP VAEAGWNLYI VNTISPVQLY bmy_17317T0/1-1079 ADPETIPERR ESPKRLLSRK GTSVNLKTPP VAEAGWNLYI VNTISPVQLY ENSBTAP00000003112/1-1003 ADPETVPERR ESPKRFLSRK GTSVNPKTPP VAEAGWNLYI VNTISPVQLY 501 550 ENSTTRP00000004417/1-930 KEMVDYSNTY KTAKTQSCIH LLSEAHLLVR AALMDAGQLE PGEKAELLEA ENSP00000296051/1-1004 KEMVDYSNTY KTVKTQSCIH LLSEAHLLVR AALMDASQLE PGEKAELLEA BACU018934/1-933 KEMVDYSNTY KTAKTQSCIH LLSEAHLLVR AALMDASQLE PGEKAELLEA bmy_17317T0/1-1079 KEMVDYSNTY KTAKTQSCIH LLSEAHLLVR AALMDASQLE PGEKAELLEA ENSBTAP00000003112/1-1003 KEMVDYSNAY KTAKTQSCVH LLSEAHLLVR AALMDASQLE PGEKAELLEA 551 600 ENSTTRP00000004417/1-930 FKESCGHLGD CYSRLDTQYS HLALPYYKMS GLSMAEVLAR VDWALEDGTQ ENSP00000296051/1-1004 FKESCGHLGD CYSRLDSQHS HLTLPYYKMS GLSMAEVLAR TDWTVEDGLQ BACU018934/1-933 FKESCGHLGD CYSRLDTQYS HLALPYYKMS GLSMAEVLAR VDWAVEDGSQ bmy_17317T0/1-1079 FKESCGHLGD CYSRLDTQYS HLALPYYKMS GLSMAEVLAR VDWEVEDGSQ ENSBTAP00000003112/1-1003 FKESCGHLGD CYSRLETQHS HLALPYYKMS GLSMAEVLNR VDWAVEDGSQ 601 650 ENSTTRP00000004417/1-930 KYERGLIFYI NHSLYENLDE ELSEELAAKV VQMFYVAEPK QLPHILCSPS ENSP00000296051/1-1004 KYERGLIFYI NHSLYENLDE ELNEELAAKV VQMFYVAEPK QVPHILCSPS BACU018934/1-933 KYERGLIFYI NHSLYENLDE ELSEELAAKV VQMFYVAEPK QLPHILCSPS bmy_17317T0/1-1079 KYERGLIFYI NHSLYENLDE ELSEELAAKV VQMFYVAEPK QLPHILCSPS ENSBTAP00000003112/1-1003 KYERGLIFYI NHSLYENLDE ELSEELSAKV VQMFYAAEPK QLPHILCSPS 651 700 ENSTTRP00000004417/1-930 MKNIDPLTAI SYLRKLDTSG FSSVLVTLTK AAMALKMRDL DMHRNEMKSH ENSP00000296051/1-1004 MKNINPLTAM SYLRKLDTSG FSSILVTLTK AAVALKMGDL DMHRNEMKSH BACU018934/1-933 MKNIDPLTAI SYLRKLDTSG FSSVLVTLTK AAMALKMRDL DMHRNEMKSH bmy_17317T0/1-1079 MKNIDPLTAI SYLRKLDTSG FSSVLVTLTK AAMALKMRDL DMHRNEMKSH ENSBTAP00000003112/1-1003 MKNIDPLTAI KYLRKLDTSG FSSVLVTLAK AAMALKMGDL DMHRNEMKSH 701 750 ENSTTRP00000004417/1-930 SEMKLVCGFI LEPRLLIQQR KGQIVPTEFA VHLKETQPXX XXXXXXXXXX ENSP00000296051/1-1004 SEMKLVCGFI LEPRLLIQQR KGQIVPTELA LHLKETQPGL LVASVLGLQK BACU018934/1-933 SEMKLVCGFI LEPRLLIQQR KGQIVPTELA VHLKETQPGL LVASVLGLQK bmy_17317T0/1-1079 SEMKLVCGFI LEPRLLIQQR KGQIVPTEFA VHLKETQPGL LVASVLGLQK ENSBTAP00000003112/1-1003 SEMKLVCGFI LEPRLLIQQR KGQIVPTEFA VHLKETQPGL LVASVLALQK 751 800 ENSTTRP00000004417/1-930 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000296051/1-1004 NNKIGIEEAD SFFKVLCAKD EDTIPQLLVD FWEAQLVACL PDVVLQELFF BACU018934/1-933 NNKIGIEEAD SFFKV-CHFE NVIVLDGLMK GIHSKTFFPL PGKCIPNFGT bmy_17317T0/1-1079 NNKIGIEEAD SFFKVLCGKD EDTIPQLLVD FWEAQLVACL PDVVLQELFF ENSBTAP00000003112/1-1003 NNKIGIEEAD SFFKVLCGKD GDTIPQLLVD FWEAQLVACL PDVVLQELFF 801 850 ENSTTRP00000004417/1-930 XXXXX----X XXXXXXXXXX XXXXXXXXXX XINTCSHYGL ISPWVNVLIS ENSP00000296051/1-1004 KLTSQ----Y IWRLSKRQPP DTTPLRTSED LINACSHYGL IYPWVHVVIS BACU018934/1-933 RQNVRDCLLF VGWMKKVLFC CIFVYYKFLL HINTCSHYGL ISPWVNVLIS bmy_17317T0/1-1079 KLTSQ----Y IWRLSKRQPP DTTPLRTSED LINTCSHYGL ISPWVNVLIS ENSBTAP00000003112/1-1003 KLTSQ----Y IWRLSKRQPP DTTPLRTSED LINTCSHYGL INPWVNVLIS 851 900 ENSTTRP00000004417/1-930 SESLADKNYM EDLSKLQSLI CGPSFDIASI IPFLEPLSED TVAGLSIHVL ENSP00000296051/1-1004 SDSLADKNYT EDLSKLQSLI CGPSFDIASI IPFLEPLSED TIAGLSVHVL BACU018934/1-933 SESLADKNYM EDLSKLQSLI CGPSFDIASI IPFLEPLSED TVAGLSVHVL bmy_17317T0/1-1079 SESLADKNYM EDLSKLQSLI CGPSFDIASI IPFLEPLSED TVAGLSVHVL ENSBTAP00000003112/1-1003 SESLVDKNYM EDLSKLQSLI CGPSFDIASI VPFLEPLSED TVAGLSVHVL 901 950 ENSTTRP00000004417/1-930 CRTRLEEYER CIDRLLERCP EAVIPYANHE LKEENRTLWW KKLLPELCQR ENSP00000296051/1-1004 CRTRLKEYEQ CIDILLERCP EAVIPYANHE LKEENRTLWW KKLLPELCQR BACU018934/1-933 CRTRLEEYER CIDRLLERCP EAVIPYANHE LKEENRTLWW KKLLPELCQR bmy_17317T0/1-1079 CRTRLEEYER CIDRLLERCP EA-------- ------TLWW KKLLPELCQR ENSBTAP00000003112/1-1003 CHTRLKEYDQ CIDRLLERCP EAVIPYANHE LKEENRTLWW KKLLPELCQR 951 1000 ENSTTRP00000004417/1-930 IKCGGEKYQL YLSSLK---- ETLSVVAVEL QLRD------ ---------- ENSP00000296051/1-1004 IKCGGEKYQL YLSSLK---- ETLSIVAVEL ELKD------ ---------- BACU018934/1-933 IKCGGEKYQL YLSSLK---- ETLSIVAVEL QLRD------ ---------- bmy_17317T0/1-1079 IKCGGEKYQL YLSSLKVRET HSLSILKIGI AIKVHFILME IKIIIIINHN ENSBTAP00000003112/1-1003 IKCGGEKYQL YLSSLK---- ETLSVVAVEL ELRD------ ---------- 1001 1050 ENSTTRP00000004417/1-930 ---------- ---------- ---------F LNVLP----- ---------- ENSP00000296051/1-1004 ---------- ---------- ---------F MNVLP----- ---------- BACU018934/1-933 ---------- ---------- ---------F LNVLP----- ---------- bmy_17317T0/1-1079 CKQVLRNDKF LKDLEVNTVN CCCGTTTKGF LKCPPRRWHC SIFLAISSLL ENSBTAP00000003112/1-1003 ---------- ---------- ---------F LNVLP----- ---------- 1051 1100 ENSTTRP00000004417/1-930 ---------- ---------- ---------- ---------- ---------- ENSP00000296051/1-1004 ---------- ---------- ---------- ---------- ---------- BACU018934/1-933 ---------- ---------- ---------- ---------- ---------- bmy_17317T0/1-1079 QSKEIIDLKN VKKLQDIGVS SKKAYIFKEK DFKLYFLVTF KIHAKFLSES ENSBTAP00000003112/1-1003 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000004417/1-930 ---EDGTAAF FLP-----YL LYC------- ---------- ---------- ENSP00000296051/1-1004 ---EDGTATF FLP-----YL LYC------- ---------- ---------- BACU018934/1-933 ---EDGTAAF FLP-----YL LYC------- ---------- ---------- bmy_17317T0/1-1079 NEIEVYKADF LLPKPCFHFL LMCTLALLAR VYVKIKKYKE LCLFFSLLLN ENSBTAP00000003112/1-1003 ---EDGTAAF FLP-----YL LYC------- ---------- ---------- 1151 1200 ENSTTRP00000004417/1-930 ---SRKKSLT ---------- ---------- ---------- ---------- ENSP00000296051/1-1004 ---SRKKPLT ---------- ---------- ---------- ---------- BACU018934/1-933 ---SRKKSLT ---------- ---------- ---------- ---------- bmy_17317T0/1-1079 NFESQFSSLT DFIYRLFLNS AFLQFHINFL LIISSRVHKT QIGNILFYFK ENSBTAP00000003112/1-1003 ---SRKKSLT ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000004417/1-930 ------ ENSP00000296051/1-1004 ------ BACU018934/1-933 ------ bmy_17317T0/1-1079 NLFYFI ENSBTAP00000003112/1-1003 ------