KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:01 2014 Check: 00 .. Name: ENSTTRP00000011689/1-1251 Len: 1552 Check: 8919 Weight: 1.00 Name: ENSP00000234739/1-1426 Len: 1552 Check: 6245 Weight: 1.00 Name: bmy_13812T0/1-1552 Len: 1552 Check: 9782 Weight: 1.00 Name: BACU009439/1-1517 Len: 1552 Check: 4642 Weight: 1.00 Name: ENSBTAP00000003141/1-1445 Len: 1552 Check: 1135 Weight: 1.00 // 1 50 ENSTTRP00000011689/1-1251 ---------- ---------- ---------- ---------- ---------- ENSP00000234739/1-1426 ---------- ---------- ---------- ---------- ---------- bmy_13812T0/1-1552 MGNQALAGRG PDSAGLRGGR EPELLTLFPP IPPIPPPPSV CPGDARFSFG BACU009439/1-1517 ---------- ---------- ---------- -----MPIRV CPGDARFSFG ENSBTAP00000003141/1-1445 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011689/1-1251 ---------- ---------- ---------- ---------- ---------- ENSP00000234739/1-1426 ---------- ---------- ---------- ---------- ---------- bmy_13812T0/1-1552 SRRHTPRECW SRKGTGPTST AEKNKEEKGV QVASAKGLAQ QAVGHCRCPQ BACU009439/1-1517 SRRHTPRECW SRKGTGPTST AEKNKEEKGV QVASAKGLAQ QAVGHCRCPQ ENSBTAP00000003141/1-1445 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011689/1-1251 ---------- ---------- ------MHSS NPKVRNSPSG NTQSSPKSKQ ENSP00000234739/1-1426 ---------- ---------- ------MHSS NPKVRSSPSG NTQSSPKSKQ bmy_13812T0/1-1552 QLFLLQPERN SVSPSLLVAA SSGFQSMHSS NPKVRNSPSG NTQSSPKSKQ BACU009439/1-1517 QLFLLQPERN SVSPSLLVAA SSGFQSMHSS NPKVRNSPSG NTQSSPKSKQ ENSBTAP00000003141/1-1445 ------PERN SVSPSLFVAA SSGFQSMHSS NPKVRNSPSG NTQSSPKSKQ 151 200 ENSTTRP00000011689/1-1251 EVMVRPPTVM SPSGNPQLDS KFSNQGKQGG SASQSQPSPC DSKSGGHTPK ENSP00000234739/1-1426 EVMVRPPTVM SPSGNPQLDS KFSNQGKQGG SASQSQPSPC DSKSGGHTPK bmy_13812T0/1-1552 EVMVRPPTVM SPSGNPQLDS KFSNQGKQGG SASQSQPSPC DSKSGGHTPK BACU009439/1-1517 EVMVRPPTVM SPSGNPQLDS KFSNQGKQGG SASQSQPSPC DSKSGGHTPK ENSBTAP00000003141/1-1445 EVMVRPPTVM SPSGNPQLDS KFSNQGKQGG SASQSQPSPC DSKSGGHTPK 201 250 ENSTTRP00000011689/1-1251 ALPGPGGSMG LKNGAGNGAK GKGKRERSIS ADSFDQRDPG TPNDDSDMKE ENSP00000234739/1-1426 ALPGPGGSMG LKNGAGNGAK GKGKRERSIS ADSFDQRDPG TPNDDSDIKE bmy_13812T0/1-1552 ALPGPGGSMG LKNGAGNGAK GKGKRERSIS ADSFDQRDPG TPNDDSDMKE BACU009439/1-1517 ALPGPGGSMG LKNGAGNGAK GKGKRERSIS ADSFDQRDPG TPNDDSDMKE ENSBTAP00000003141/1-1445 ALPGPGGSMG LKNGAGNGAK GKGKRERSIS ADSFDQRDPG TPNDDSDMKE 251 300 ENSTTRP00000011689/1-1251 CNSADHIKSQ DSQHTPHSMT PSNATVPRSS TPSHGQTTAP EPTPAQKTPA ENSP00000234739/1-1426 CNSADHIKSQ DSQHTPHSMT PSNATAPRSS TPSHGQTTAT EPTPAQKTPA bmy_13812T0/1-1552 CNSADHIKSQ DSQHTPHSMT PSNATVPRSS TPSHGQTTAP EPTPAQKTLX BACU009439/1-1517 CNSADHIKSQ DSQHTPHSMT PSNATVPRSS TPSHGQTTAP EPTPAQKTPA ENSBTAP00000003141/1-1445 CNSADHIKSQ DSQHTPHSMT PSNATVPRSS TPSHGQTTAP EPTPAQKTPA 301 350 ENSTTRP00000011689/1-1251 KVVYVFSTEM ANKAAEAVLK GQVETIVSFH IQNISNSKTE RSTAPLNTQI ENSP00000234739/1-1426 KVVYVFSTEM ANKAAEAVLK GQVETIVSFH IQNISNNKTE RSTAPLNTQI bmy_13812T0/1-1552 KVVYVFSTEM ANKAAEAVLK GQVETIVSFH IQNISNSKTE RSTAPLNTQI BACU009439/1-1517 KVVYVFSTEM ANKAAEAVLK GQVETIVSFH IQNISNSKTE RSTAPLNTQI ENSBTAP00000003141/1-1445 KVVYVFSTEM ANKAAEAVLK GQVETIVSFH IQNISNSKTE RSTAPLNTQI 351 400 ENSTTRP00000011689/1-1251 SALRNDPKPL PQQPPTPANQ DQTSSQNTRL QPTPPIPAPA PKPAAPPRPL ENSP00000234739/1-1426 SALRNDPKPL PQQPPAPANQ DQNSSQNTRL QPTPPIPAPA PKPAAPPRPL bmy_13812T0/1-1552 SALRNDPKPL PQQPPAPANQ DQTSSQNTRL QPTPPIPAPA PKPAAPPRPL BACU009439/1-1517 SALRNDPKTL PQQPPAPATQ DQTSSQNTRL QPTPPIPAPA PKPAAPPRPL ENSBTAP00000003141/1-1445 SALRNDPKPL PQQPPAPANQ DQNSSQNTRL QPTPPIPAPA PKPAAPPRPL 401 450 ENSTTRP00000011689/1-1251 DRDSPGVENK LIPSVGSPAS STPLPPDGTG PNSTPNNRAV TPVSQGSSSS ENSP00000234739/1-1426 DRESPGVENK LIPSVGSPAS STPLPPDGTG PNSTPNNRAV TPVSQGSNSS bmy_13812T0/1-1552 DRDSPGVENK LIPSVGSPAS STPLPPDGTG PNSTPNNRAV TPVSQGSSSS BACU009439/1-1517 DRESPGVENK LIPSVGSPAS STPLPPDGTG PNSTPNNRAV TPVSQGSSSS ENSBTAP00000003141/1-1445 DRDSPGVENK LIPSVGSPAG STPLPPDSTG PNSTPNNRAV TPVSQGSNSS 451 500 ENSTTRP00000011689/1-1251 SADPKGPPPP PVSSGEPPPL GENPDGLSQE QLEHRERSLQ TLRDIQRMLF ENSP00000234739/1-1426 SADPKAPPPP PVSSGEPPTL GENPDGLSQE QLEHRERSLQ TLRDIQRMLF bmy_13812T0/1-1552 SADPKAPPPP PVSSGEPPPL GENPDGLSQE QLEHRERSLQ TLRDIQRMLF BACU009439/1-1517 SADPKAPPPP PVSSGEPPAL GENPDGLSQE QLEHRERSLQ TLRDIQRMLF ENSBTAP00000003141/1-1445 SADPKAPPPP PVSSGEPPTL GENPDGLSQE QLEHRERSLQ TLRDIQRMLF 501 550 ENSTTRP00000011689/1-1251 PDEKEFPGGQ SGGPQQNTGV LDGPQKKPEG PIQAMMAQSQ SL-KGPGPGT ENSP00000234739/1-1426 PDEKEFTGAQ SGGPQQNPGV LDGPQKKPEG PIQAMMAQSQ SLGKGPGPRT bmy_13812T0/1-1552 PDEKEFPGGQ SGGPQQNTGV LDGPQKKPEG PIQAMMAQSQ SLGKGPGPRT BACU009439/1-1517 PDEKEFPGGQ SGGPQQNTGV LDGPQKKPEG PIQAMMAQSQ SLGKGPGPRT ENSBTAP00000003141/1-1445 PDEKEFPGGQ SGGPQQNTGV LDGPQKKPEG PIQAMMVQSQ SLGKGPGPRT 551 600 ENSTTRP00000011689/1-1251 DVGAPFGP-G HRDVPFSPDE MVPPSMNSQX XXXXXXXXXX XXXXXXXXXX ENSP00000234739/1-1426 DVGAPFGPQG HRDVPFSPDE MVPPSMNSQS GTIGPDHLDH MTPEQIAWLK bmy_13812T0/1-1552 DVGAPFGPQG HRDVPFSPDE MVPPSMNSQS GPIGPDHLDH MTPEQIAWLK BACU009439/1-1517 DVGAPFGPQG HREVPFSPDE MVPPSMNSQS GPIGPDHLDH MTPEQIAWLK ENSBTAP00000003141/1-1445 DVGAPFGPQG HRDVPFSPDE MVPPSMNSQS GPIGPDHLDH MTPEQIAWLK 601 650 ENSTTRP00000011689/1-1251 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ HGPRGVVRGP PLPYQMTPSE ENSP00000234739/1-1426 LQQEFYEEKR RKQEQVVVQQ CSLQDMMVHQ HGPRGVVRGP PPPYQMTPSE bmy_13812T0/1-1552 LQQEFYEEKR RKQEQVVVQQ CSLQDMMVHQ HGPRGVVRGP PPPYQMTPSE BACU009439/1-1517 LQQEFYEEKR RKQEQVVVQQ CSLQDMMVHQ HGPRGVVRGP PPPYQMTPSE ENSBTAP00000003141/1-1445 LQQEFYEEKR RKQEQVVVQQ CSLQDMMVHQ HGPRGVVRGP PPPYQMTPGE 651 700 ENSTTRP00000011689/1-1251 AWGPGGAEPF ADGINMPYSL LPRAMALHSN MPGSQMRLPG FAGMMNSEME ENSP00000234739/1-1426 GWAPGGTEPF SDGINMPHSL PPRGMAPHPN MPGSQMRLPG FAGMINSEME bmy_13812T0/1-1552 AWGPGGAEPF ADGINMPHSL PPRAMAPHPN MPGSQMRLPG FAGMMNSEME BACU009439/1-1517 AWGPGGAEPF ADGINMPHSL PPRAMAPHPN MPGSQMRLPG FAGMMNSEVE ENSBTAP00000003141/1-1445 AWGPGGSEPF ADGINMPHSL PPRAMAPHPN MPGSQMRLPG FAGMMNSEME 701 750 ENSTTRP00000011689/1-1251 GPNVPNSASR PGLSGVSWPD DVPKIPDGRN FPPGQGVFSG PGRGERFPNP ENSP00000234739/1-1426 GPNVPNPASR PGLSGVSWPD DVPKIPDGRN FPPGQGIFSG PGRGERFPNP bmy_13812T0/1-1552 GPNVPNPASR PGLSGVSWPD DVPKIPDGRN FPPGQGVFSG PGRGERFPNP BACU009439/1-1517 GPNVPNPASR PGLSGVSWPD DVPKVPDGRN FPPGQGVFSG PGRGERFPNP ENSBTAP00000003141/1-1445 GPNVPNPASR PGLSAVSWPD DVPKIPDGRN FPPGQGVFSG PGRGERFPNP 751 800 ENSTTRP00000011689/1-1251 QGLSEEMFQQ QLAEKQLGLP PGMSMEGIRP GMEMNRLIPG SQRHMEPGSN ENSP00000234739/1-1426 QGLSEEMFQQ QLAEKQLGLP PGMAMEGIRP SMEMNRMIPG SQRHMEPGNN bmy_13812T0/1-1552 QGLSEEMFQQ QLAEKQLGLP PGMTIEGIRP GMEMNRMIPG SQRHMEPGSN BACU009439/1-1517 QGLSEEMFQQ QLAEKQLGLP PGMSMEGIRP GMEMNRMIPG SQRHMEPGSN ENSBTAP00000003141/1-1445 QGLSEEMF-H SLAEKQLGLP PGMSVEGITP GMEMNRMIPG SQRHVEPGNN 801 850 ENSTTRP00000011689/1-1251 PIFPRIPVEG PLSPSRGDFP KGMPPQMGPG RELEFGMVPS GMKGDVSLNV ENSP00000234739/1-1426 PIFPRIPVEG PLSPSRGDFP KGIPPQMGPG RELEFGMVPS GMKGDVNLNV bmy_13812T0/1-1552 PIFPRIPVEG PLSPSRGDFP KGMPPQMGPG RELEFGMVPS GMKGDVSLNV BACU009439/1-1517 PIFPRIPVEG PLSPSRGDFP KGMPPQMGPG RELEFGMVPG GMKGDVSLNV ENSBTAP00000003141/1-1445 PIFPRIPVEG PLSPSRGDFP KGMPPQLGPG RELEFGMVPS GMKGDVSLNV 851 900 ENSTTRP00000011689/1-1251 NMGSNSQMIP QKMREAGVGP EEMMKLRAGG ADMLPAQQKM VPLPFGEHPQ ENSP00000234739/1-1426 NMGSNSQMIP QKMREAGAGP EEMLKLRPGG SDMLPAQQKM VPLPFGEHPQ bmy_13812T0/1-1552 SMGSNSQMIP QKMREAGAGP EEMMKLRAGG ADMLPAQQKM VPLPFGEHPQ BACU009439/1-1517 NMGSSSQMIP QKMREAGAGP EEMMKLRAGG ADVLPAQQKM VPLPFGEHPQ ENSBTAP00000003141/1-1445 SMGSNSQMIP QKMREAGAGP EEMLKLRAGG ADMLPAQQKM VPLPFGEHPQ 901 950 ENSTTRP00000011689/1-1251 QEYGMGPRPF LPMSQGPGSN SGLRNLREPI GPDQRTNSRL SHMPPLPLNP ENSP00000234739/1-1426 QEYGMGPRPF LPMSQGPGSN SGLRNLREPI GPDQRTNSRL SHMPPLPLNP bmy_13812T0/1-1552 QEYGMGPRPF LPMSQGPGGS SGLRNLREPI GPDQRTNSRL SHMPPLPLNP BACU009439/1-1517 QEYGMGPRPF LPMSQGPGGN SGLRNLREPI GPDQRTNSRL SHMPPLPLNP ENSBTAP00000003141/1-1445 QEYGMGPRPF LPMSQGPGSN SGLRNLREPM GPDQRTNSRL SHMPPLPLNP 951 1000 ENSTTRP00000011689/1-1251 SSNPTSLNTA PSVQRGLGRK PVDLSVAGSQ VHSPGINPLK SPTMRQVQSP ENSP00000234739/1-1426 SSNPTSLNTA PPVQRGLGRK PLDISVAGSQ VHSPGINPLK SPTMHQVQSP bmy_13812T0/1-1552 SSNPTSLNTA PPVQRGLGRK PVDLSVAGSQ VHSPGINPLK SPTMRQVQSP BACU009439/1-1517 SSNPTSLNTA PPVQRGLGRK PVDLSVAGSQ VHSPGINPLK SPTMRQVQSP ENSBTAP00000003141/1-1445 SSNPTSLNTA PPVQRGLGRK PVDISVAGSQ VHSPGINPLK SPTMRQVQSP 1001 1050 ENSTTRP00000011689/1-1251 MLGSPSGNLK SPQTPSQLAG MLAGPAAAAS IKSPPVLGSA DASPVHLKSP ENSP00000234739/1-1426 MLGSPSGNLK SPQTPSQLAG MLAGPAAAAS IKSPPVLGSA AASPVHLKSP bmy_13812T0/1-1552 MLGSPSGNLK SPQTPSQLAG MLAGPAAAAS IKSPPVLGSA AASPVHLKSP BACU009439/1-1517 MLGSPSGNLK SPQTPSQLAG MLAGPAAAAS IKSPPVLGSA AASPVHLKSP ENSBTAP00000003141/1-1445 MLGSPSGNLK SPQTPSQLAG MLAGPAAAAS IKSPPVLGSA AASPVHLKSP 1051 1100 ENSTTRP00000011689/1-1251 SLPAPSPGWT SSPKPPLQSP GTLXXXXXXX XXXXXXXXXX XXXXGPPPPT ENSP00000234739/1-1426 SLPAPSPGWT SSPKPPLQSP GIPPNHKAPL TMASPAMLGN VESGGPPPPT bmy_13812T0/1-1552 SLPAPSPGWT SSPKPPLQSP GIPPNHKAPL TMASPAMLGS VESGGPPPPT BACU009439/1-1517 SLPAPSPGWT SSPKPPLQSP GIPPNHKAPL TMASPAMLGS VESGGPPPPT ENSBTAP00000003141/1-1445 SLPAPSPGWT SSPKPPLQSP GIPPNHKAPL TMASPAMLAS VESGGPPPPT 1101 1150 ENSTTRP00000011689/1-1251 ASQSASVSIP GSLPSSTPYT MPPEPTLSQN PLSIMMSRMS KFAMPSSTPL ENSP00000234739/1-1426 ASQPASVNIP GSLPSSTPYT MPPEPTLSQN PLSIMMSRMS KFAMPSSTPL bmy_13812T0/1-1552 ASQSASVSIP GSLPSSTPYT MPPEPTLSQN PLSIMMSRMS KFAMPSSTPL BACU009439/1-1517 ASQSASVSIP GSLPSSTPYT MPPEPTLSQN PLSIMMSRMS KFAMPSSTPL ENSBTAP00000003141/1-1445 ASQSASVSIP GSLPSSTPYT MPPEPTLSQN PLSIMMSRMS KFAMPSSTPL 1151 1200 ENSTTRP00000011689/1-1251 YHDAIKTVAS SDDDSPPARS PNLPSMNNMP GLGINTQNPR ISGPNPVVPM ENSP00000234739/1-1426 YHDAIKTVAS SDDDSPPARS PNLPSMNNMP GMGINTQNPR ISGPNPVVPM bmy_13812T0/1-1552 YHDAIKTVAS SDDDSPPARS PNLPSMNNMP GMGINTQNPR ISGPNPVVPM BACU009439/1-1517 YHDAIKTVAS SDDDSPPARS PNLPSMNNMP GMGINTQNPR ISGPNPVVPM ENSBTAP00000003141/1-1445 YHDAIKTVAS SDDDSPPARS PNLPSMNNMP GMGINTQNPR ISGPNPVVPM 1201 1250 ENSTTRP00000011689/1-1251 PTLSPMGMTQ PLSHSNQMPS PNAMGPTIPP HGVPMGPGLM SHNPIMGHGS ENSP00000234739/1-1426 PTLSPMGMTQ PLSHSNQMPS PNAVGPNIPP HGVPMGPGLM SHNPIMGHGS bmy_13812T0/1-1552 PTLSPMGMTQ PLSHSNQMPS PNAMGPTIPP HGVPMGPGLM SHNPIMGHGS BACU009439/1-1517 PTLSPMGMTQ PLSHSNQMPS PNAMGPTIPP HGVPMGPGLM SHNPIMGHGS ENSBTAP00000003141/1-1445 PTLSPMGMTQ PLSHSNQMPS PNAMGPNIPP HGVPMGPGLM SHNPIMGHGS 1251 1300 ENSTTRP00000011689/1-1251 QEPPMVPQGR MGFPQGFPPV QSPPQQVPFP HNGPSGGQGN FPGGMGFPGE ENSP00000234739/1-1426 QEPPMVPQGR MGFPQGFPPV QSPPQQVPFP HNGPSGGQGS FPGGMGFPGE bmy_13812T0/1-1552 QEPPMVPQGR MGFPQGFPPV QSPPQQVPFP HNGPSGGQGN FPGGMGFPGE BACU009439/1-1517 QEPPMVPQGR MGFPQGFPPV QSPPQQVPFP HNGPSGGQGN FPGGMGFPGE ENSBTAP00000003141/1-1445 QEPPMVPQGR MGFPQGFPPV QSPPQQVPFP HNGPSGGQGN FPGGMGFPGE 1301 1350 ENSTTRP00000011689/1-1251 GPLGRPSNLP QSSADAALCK PGGPGGPDSF AVLGNSMPSV FTDPDLQEVI ENSP00000234739/1-1426 GPLGRPSNLP QSSADAALCK PGGPGGPDSF TVLGNSMPSV FTDPDLQEVI bmy_13812T0/1-1552 GPLGRPSNLP QSSADAALCK PGGPGGPDSF AVLGNSMPSV FTDPDLQEVI BACU009439/1-1517 GPLGRPSNLP QSSADAALCK PGGPGGPDSF AVLGNSMPSV FTDPDLQEVI ENSBTAP00000003141/1-1445 GPLGRPSNLP QSSADAALCK PGGPGGPDSF AVLGNSMPSV FTDPDLQEVI 1351 1400 ENSTTRP00000011689/1-1251 RPGATGIPEF DLSRIIPSEK PSQTLQYFP- ---------- ---------- ENSP00000234739/1-1426 RPGATGIPEF DLSRIIPSEK PSQTLQYFPR GEVPGRKQPQ GPGPGFSHMQ bmy_13812T0/1-1552 RPGATGIPEF DLSRIIPSEK PSQTLQYFPR GEVPGRKQPQ GPGPGFSHMQ BACU009439/1-1517 RPGATGIPEF DLSRIIPSEK PSQTLQYFPR GEVPGRKQPQ GPGPGFSHMQ ENSBTAP00000003141/1-1445 RPGATGIPEF DLSRIIPSEK PSQTLQYFPR GEVPGRKQPQ GPGPGFSHMQ 1401 1450 ENSTTRP00000011689/1-1251 ---------- ---------- ---------- ---------- ---------- ENSP00000234739/1-1426 GMMGEQAPRM GLALPGMGGP GPVGTPDIPL GTAPSMPGHN PMRPPAFLQQ bmy_13812T0/1-1552 GMMGEQAPRM GLALPGMGGP GPVGTPDIPL GTAPSMPGHN PMRPPAFLQQ BACU009439/1-1517 GMMGEQAPRM GLALPGMGGP GPVGTPDIPL GTAPSMPGHN PMRPPAFLQQ ENSBTAP00000003141/1-1445 GMMGEQAPRM GLALPGMGGP GPVGTPDIPL GTAPSMPGHN PMRPPAFLQQ 1451 1500 ENSTTRP00000011689/1-1251 ---------- ---------- ---------- ---------- ---------- ENSP00000234739/1-1426 GMMGPHHRMM SPAQSTMPGQ PTLMSNPAAA VGMIPGKDRG PAGLYTHPGP bmy_13812T0/1-1552 GMMGPHHRMM SPAQSTMPGQ PTLMSNPAAA VGMIPGKDRG PAGLYTHPGP BACU009439/1-1517 GMMGPHHRMM SPAQSTMPGQ PTLMSNPAAA VGMIPGKDRG PAGLYTHPGP ENSBTAP00000003141/1-1445 GMMGPHHRMM SPAQSTMPGQ PTLMSNPAAA VGMIPGKDRG PAGLYTHPGP 1501 1550 ENSTTRP00000011689/1-1251 ---------- ---------- ---------- ---------- ---------- ENSP00000234739/1-1426 VGSPGMMMSM QGMMGPQQNI MIPPQMRPRG MAADVGMGGF SQGPGNPGNM bmy_13812T0/1-1552 VGSPGMMMSM QGMMGPQQNI MIPPQMRPRG MAADVGMGGF SQGPGNPGNM BACU009439/1-1517 VGSPGMMMSM QGMMGPQQNI MIPPQMRPRG MAADVGMGGF SQGPGNPGNM ENSBTAP00000003141/1-1445 VGSPGMMMSM QGMMGPQQNI MIPPQMRPRG MAADVGMGGF SQGPGNPGNM 1551 1600 ENSTTRP00000011689/1-1251 -- ENSP00000234739/1-1426 MF bmy_13812T0/1-1552 MF BACU009439/1-1517 MF ENSBTAP00000003141/1-1445 MF