KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:06 2014 Check: 00 .. Name: bmy_17986T0/1-511 Len: 560 Check: 6834 Weight: 1.00 Name: ENSTTRP00000012008/1-337 Len: 560 Check: 6435 Weight: 1.00 Name: ENSP00000365063/1-337 Len: 560 Check: 2499 Weight: 1.00 Name: BACU019984/1-337 Len: 560 Check: 2577 Weight: 1.00 Name: ENSBTAP00000003149/1-337 Len: 560 Check: 4056 Weight: 1.00 // 1 50 bmy_17986T0/1-511 MLPAGRSGRL RALTPEASEA GEKPPGDRRE ERLRVNPSLG TRPIANMRVR ENSTTRP00000012008/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000365063/1-337 ---------- ---------- ---------- ---------- ---------- BACU019984/1-337 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003149/1-337 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_17986T0/1-511 AARSRGILSV RAAVAGGWGN SSGRGLCACP GGRAGFPLPG GRREQVMWEP ENSTTRP00000012008/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000365063/1-337 ---------- ---------- ---------- ---------- ---------- BACU019984/1-337 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003149/1-337 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_17986T0/1-511 AGVFAGYTER GPEVEEPRAA AQELRATPLQ CLSTMIQIAD VCRSSSIKSM ENSTTRP00000012008/1-337 ---------- ---------- ---------- ---------- ---------- ENSP00000365063/1-337 ---------- ---------- ---------- ---------- ---------- BACU019984/1-337 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003149/1-337 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_17986T0/1-511 EVLGRLRRAT MEKSWMLWNF VERWLIALAS WSWALCQ--- ---------- ENSTTRP00000012008/1-337 ---------- MEKSCMLWNF VERWLIALAS WSWALCRISL LPLIVTFHLY ENSP00000365063/1-337 ---------- MEKSWMLWNF VERWLIALAS WSWALCRISL LPLIVTFHLY BACU019984/1-337 ---------- MEKSWMLWNF VERWLIALAS WSWALCRISL LPLIVTFHLY ENSBTAP00000003149/1-337 ---------- MEKSWMLWNF VERWLVALAS WSWALCRISL LSLIVTFHLY 201 250 bmy_17986T0/1-511 ---------- ---------- ---------Q PSSSRLYVPM PTGIPHENIF ENSTTRP00000012008/1-337 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX PTGIPHENIF ENSP00000365063/1-337 GGIILLLLIF ISIAGILYKF QDVLLYFPEQ PSSSRLYVPM PTGIPHENIF BACU019984/1-337 GGIILLLLIF ISIAGILYKF QDVLLYFPEQ PSSSRLYVPM PTGIPHENIF ENSBTAP00000003149/1-337 GGIVLLLLIF ISIAGILYKF QDVLLYFPEQ PSSSRLYVPM PTGIPHENIF 251 300 bmy_17986T0/1-511 IRTKDGVRLN LILIRYTGDN SPYSPTIIYF HGNAGNIGHR LPNALLMLVN ENSTTRP00000012008/1-337 IRTKDGVRLN LILIRYTGDN SPYSPTIIYF HGNAGNIGHR LPNALLMLVN ENSP00000365063/1-337 IRTKDGIRLN LILIRYTGDN SPYSPTIIYF HGNAGNIGHR LPNALLMLVN BACU019984/1-337 IRTKDGVRLN LILIRYTGDN SPYSPTIIYF HGNAGNIGHR LPNALLMLVN ENSBTAP00000003149/1-337 IRTKDGVRLN LILIRYTGDS SPYSPTIIYF HGNAGNIGHR LPNALLMLVN 301 350 bmy_17986T0/1-511 LKVNLLLVDY RGYGKSEGEA SEEGLYLDSE AVLDYQEMKL RPMCRLPLNF ENSTTRP00000012008/1-337 LKVNLLLVDY RGYGKSEGEA SEEGLYLDSE AVLDY----- ---------- ENSP00000365063/1-337 LKVNLLLVDY RGYGKSEGEA SEEGLYLDSE AVLDY----- ---------- BACU019984/1-337 LKVNLLLVDY RGYGKSEGEA SEEGLYLDSE AVLDY----- ---------- ENSBTAP00000003149/1-337 LKVNLLLVDY RGYGKSEGEA SEEGLYLDSE AVLDY----- ---------- 351 400 bmy_17986T0/1-511 ALYSRFINNP PLFFLTQDLR SYGQLVLIKR EFFMSHTFIL GSSLSGIAPA ENSTTRP00000012008/1-337 ---------- ---------- -----VMTRP DLDKTKIFLF GRSLGGAVAI ENSP00000365063/1-337 ---------- ---------- -----VMTRP DLDKTKIFLF GRSLGGAVAI BACU019984/1-337 ---------- ---------- -----VMTRP DLDKTKIFLF GRSLGGAVAI ENSBTAP00000003149/1-337 ---------- ---------- -----VMTRP DLDKTKIFLF GRSLGGAVAI 401 450 bmy_17986T0/1-511 SHPKDDEH-- -LDLVRGYKH LIPLNISGPA ALLPLVEGAL ALLCWGCPLV ENSTTRP00000012008/1-337 HLASENSHRI SAIMVENTFL SIPHMASTLF SFFPM--RYL PLWCYKNKFL ENSP00000365063/1-337 HLASENSHRI SAIMVENTFL SIPHMASTLF SFFPM--RYL PLWCYKNKFL BACU019984/1-337 HLASENSHRI SAIMVENTFL SIPHMASTLF SFFPM--RYL PLWCYKNKFL ENSBTAP00000003149/1-337 HLASENSHRI SAIMVENTFL SIPHMASTLF SFFPM--RYL PLWCYKNKFL 451 500 bmy_17986T0/1-511 ----VQDQLL VPNWLQADCS VALPGEQLKA KNFYSRTRSG VACQKGKSVH ENSTTRP00000012008/1-337 SYRKISQCRM PSLFISGLSD QLIPPVMMKQ LYELSPSRTK RLAIFPDGTH ENSP00000365063/1-337 SYRKISQCRM PSLFISGLSD QLIPPVMMKQ LYELSPSRTK RLAIFPDGTH BACU019984/1-337 SYRKISQCRM PSLFISGLSD QLIPPVMMKQ LYELSPSRTK RLAIFPDGTH ENSBTAP00000003149/1-337 SYRKISQCRM PSLFISGLSD QLIPPVMMKQ LYELSPSRTK RLAIFPDGTH 501 550 bmy_17986T0/1-511 SQKEAVAAGV QGGREICFTV IDLETRTVTK ELYYTEESAR SLIEDNFHLR ENSTTRP00000012008/1-337 NDT----WQC QG----YFTA LEQFIKEVIK S-HSPEEMAK T--SSNVTII ENSP00000365063/1-337 NDT----WQC QG----YFTA LEQFIKEVVK S-HSPEEMAK T--SSNVTII BACU019984/1-337 NDT----WQC QG----YFTA LEQFIKEVIK S-HSPEEMAK T--SSNVTII ENSBTAP00000003149/1-337 NDT----WQC QG----YFTA LEQFIKEVIK S-PSPEEMAK T--SSNVTII 551 600 bmy_17986T0/1-511 TANWGDHGNH ENSTTRP00000012008/1-337 ---------- ENSP00000365063/1-337 ---------- BACU019984/1-337 ---------- ENSBTAP00000003149/1-337 ----------