KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:07 2014 Check: 00 .. Name: ENSTTRP00000011720/1-981 Len: 1078 Check: 2636 Weight: 1.00 Name: ENSP00000340507/1-1050 Len: 1078 Check: 3750 Weight: 1.00 Name: ENSBTAP00000003151/1-1053 Len: 1078 Check: 7606 Weight: 1.00 Name: bmy_07061T0/1-1075 Len: 1078 Check: 369 Weight: 1.00 Name: BACU006757/1-779 Len: 1078 Check: 7365 Weight: 1.00 // 1 50 ENSTTRP00000011720/1-981 MEVAVEKAAT AAAAASAAAA GGPSAPPSGE NEAESRQGPD SERGGEAARL ENSP00000340507/1-1050 MEVAVEKAVA AAAAASAAAS GGPSAAPSGE NEAESRQGPD SERGGEAARL ENSBTAP00000003151/1-1053 MEVAVEKAAT AAAAASAAAA GGPSAAPSGE NEAESRQGPD SERGGEAARL bmy_07061T0/1-1075 MEVAVEKAAT AAAAASAAAA GGPSAPPSGE NEAESRQGPD SERGGEAARL BACU006757/1-779 -MVGVIR--- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011720/1-981 NLLDTCAVCH QNIQSRAPKL LPCLHSFCQR CLPAPQRYLM LPAPMLGSAE ENSP00000340507/1-1050 NLLDTCAVCH QNIQSRAPKL LPCLHSFCQR CLPAPQRYLM LPAPMLGSAE ENSBTAP00000003151/1-1053 NLLDTCAVCH QNIQSRAPKL LPCLHSFCQR CLPAPQRYLM LPAPMLGSAE bmy_07061T0/1-1075 NLLDTCAVCH QNIQSRAPKL LPCLHSFCQR CLPAPQRYLM LPAPMLGSAE BACU006757/1-779 -----CPVC- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011720/1-981 TPPPVPAPGS PVSGSSPFAT QVGVIR---- ---CPVCSQE CAERHIIDNF ENSP00000340507/1-1050 TPPPVPAPGS PVSGSSPFAT QVGVIR---- ---CPVCSQE CAERHIIDNF ENSBTAP00000003151/1-1053 TPPPVPAPGS PVSGSSPFAT QVGVIR---- ---CPVCSQE CAERHIIDNF bmy_07061T0/1-1075 TPPPVPAPGS PVSGSSPFAT QDFKFSLFKN GNFIMFLHQE CAERHIIDNF BACU006757/1-779 ---------- ---------- ---------- -------SQE CAERHIIDNF 151 200 ENSTTRP00000011720/1-981 FVKDTTEVPS STVEKSNQVC TSCEDNXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340507/1-1050 FVKDTTEVPS STVEKSNQVC TSCEDNAEAN GFCVECVEWL CKTCIRAHQR ENSBTAP00000003151/1-1053 FVKDTTEVPS STVEKSNQVC TSCEDNAEAN GFCVECVEWL CKTCIRAHQR bmy_07061T0/1-1075 FVKDTTEVPS STVEKSNQVC TSCEDNAEAN GFCVECVEWL CKTCIRAHQR BACU006757/1-779 FVKDTTEVPS STVEKSNQVC TSCEDNAEAN GFCVECVEWL CKTCIRAHQR 201 250 ENSTTRP00000011720/1-981 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000340507/1-1050 VKFTKDHTVR QKEEVSPEAV GVTSQRPVFC PFHKKEQLKL YCETCDKLTC ENSBTAP00000003151/1-1053 VKFTKDHTVR QKEEVSPEAV GVTSQRPVFC PFHKKEQLKL YCETCDKLTC bmy_07061T0/1-1075 VKFTKDHTVR QKEEVSPEAV GVTSQRPVFC PFHKKEQLKL YCETCDKLTC BACU006757/1-779 VKFTKDHTVR QKEEVSPEAV GVTSQRPVFC PFHKKEQLKL YCETCDKLTC 251 300 ENSTTRP00000011720/1-981 XXXXXXXXXX XXYQFIEEAF QNQKVIIDTL ITKLMEKTKY IKFTGNQIQN ENSP00000340507/1-1050 RDCQLLEHKE HRYQFIEEAF QNQKVIIDTL ITKLMEKTKY IKFTGNQIQN ENSBTAP00000003151/1-1053 RDCQLLEHKE HRYQFIEEAF QNQKVIIDTL ITKLMEKTKY IKFTGNQIQN bmy_07061T0/1-1075 RDCQLLEHKE HRYQFIEEAF QNQKVIIDTL ITKLMEKTKY IKFTGNQIQN BACU006757/1-779 RDCQLLEHKE HRYQFIEEAF QNQKVIIDTL ITKLMEKTKY IKFTGNQIQN 301 350 ENSTTRP00000011720/1-981 RIIEVNQNQK QVEQDIKVAI FTLMVEINKK GKALLHQLES LAKDHRMKLM ENSP00000340507/1-1050 RIIEVNQNQK QVEQDIKVAI FTLMVEINKK GKALLHQLES LAKDHRMKLM ENSBTAP00000003151/1-1053 RIIEVNQNQK QVEQDIKVAI FTLMVEINKK GKALLHQLES LAKDHRMKLM bmy_07061T0/1-1075 RIIEVNQNQK QVEQDIKVAI FTLMVEINKK GKALLHQLES LAKDHRMKLM BACU006757/1-779 RIIEVNQNQK QVEQDIKVAI FTLMVEINKK GKALLHQLES LAKDHRMKLM 351 400 ENSTTRP00000011720/1-981 QQQQEVAGLS KQLEHVMHFS KWAVSSGSST ALLYSKRLIT YRLRHLLRAR ENSP00000340507/1-1050 QQQQEVAGLS KQLEHVMHFS KWAVSSGSST ALLYSKRLIT YRLRHLLRAR ENSBTAP00000003151/1-1053 QQQQEVAGLS KQLEHVMHFS KWAVSSGSST ALLYSKRLIT YRLRHLLRAR bmy_07061T0/1-1075 QQQQEVAGLS KQLEHVMHFS KWAVSSGSST ALLYSKRLIT YRLRHLLRAR BACU006757/1-779 QQQQEVAGLS KQLEHVMHFS KWAVSSGSST ALLYSKRLIT YRLRHLLRAR 401 450 ENSTTRP00000011720/1-981 CDASPVTNNT IQFHCDPSFW AQNIINLGSL VIEDKESQPQ MPKQNPVMEQ ENSP00000340507/1-1050 CDASPVTNNT IQFHCDPSFW AQNIINLGSL VIEDKESQPQ MPKQNPVVEQ ENSBTAP00000003151/1-1053 CDASPVTNNT IQFHCDPSFW AQNIINLGSL VIEDKESQPQ MPKQNPVVEQ bmy_07061T0/1-1075 CDASPVTNNT IQFHCDPSFW AQNIINLGSL VIEDKESQPQ MPKQNPVMEQ BACU006757/1-779 CDASPVTNNT IQFHCDPSFW AQNIINLGSL VIEDKESQPQ MPKQNPVMEQ 451 500 ENSTTRP00000011720/1-981 NSQPPGGLSS NQLSKFPTQI SLAQLRLQHM QQQVMAQRQQ VQRRPAPVGL ENSP00000340507/1-1050 NSQPPSGLSS NQLSKFPTQI SLAQLRLQHM QQQVMAQRQQ VQRRPAPVGL ENSBTAP00000003151/1-1053 NSQPPGGLSS NQLSKFPTQI SLAQLRLQHM QQQVMAQRQQ VQRRPAPVGL bmy_07061T0/1-1075 NSQPPGGLSS NQLSKFPTQI SLAQLRLQHM QQQVMAQRQQ VQRRPAPVGL BACU006757/1-779 NSQPPGGLSS NQLSKFPTQI SLAQLRLQHM QQQVMAQRQQ VQRRPAPVGL 501 550 ENSTTRP00000011720/1-981 PNPRMQGPIQ QPSISHQQPP PRLINFQNHS PKPNGPVLPP HPQQLRYPPN ENSP00000340507/1-1050 PNPRMQGPIQ QPSISHQQPP PRLINFQNHS PKPNGPVLPP HPQQLRYPPN ENSBTAP00000003151/1-1053 PNPRMQGPIQ QPSISHQQPP PRLINFQNHS PKPNGPVLPP HHQQLRYPSN bmy_07061T0/1-1075 PNPRMQGPIQ QPSISHQQPP PRLINFQNHS PKPNGPVLPP HPQQLRYPPN BACU006757/1-779 PNPRMQGPIQ QPSISHQQPP PRLINFQNHS PKPNGPVLPP HPQQLRYPPN 551 600 ENSTTRP00000011720/1-981 QSAPRQAIKP NPLQMAFLAQ QAIK---QXX XXXXXXXXXX XXXXXXXXXX ENSP00000340507/1-1050 QNIPRQAIKP NPLQMAFLAQ QAIK---QWQ ISSGQGTPST TNSTSSTPSS ENSBTAP00000003151/1-1053 QNTPRQAMKP NPLQMAFLAQ QAIKQLPQWQ ISSGHAAPST ANSTSSTPSS bmy_07061T0/1-1075 QNMPRQAIKP NPLQMAFLAQ QAIK---QWQ ISSGQAAPSP ANSTSSTPSS BACU006757/1-779 QNMPRQAIKP NPLQMAFLAQ QAIK---QWQ ISSGQAAPSP ANSTSSTPSS 601 650 ENSTTRP00000011720/1-981 XXXXXXXXXX XKAFGSPMID LSSPVGGPYN LPSLPDIDCS STIMLDNIVR ENSP00000340507/1-1050 PTITSAAGYD GKAFGSPMID LSSPVGGSYN LPSLPDIDCS STIMLDNIVR ENSBTAP00000003151/1-1053 PTITSAAGYD AKAFGSPVID LSSPVGGPYN LPSLPDIDCS STIMLDNIVR bmy_07061T0/1-1075 PTITSAAGCD GKAFGSPMID LSSPVGGPYN LPSLPDIDCS STIMLDNIVR BACU006757/1-779 PTITSAAGCD GKAFGSPMID LSSPVGGPYN LPSLPD---- ---------- 651 700 ENSTTRP00000011720/1-981 KDTSTDHGQP RPPSNRTVQS PNSSVPSPGL TGPVTMTSVH PPIRSPSASS ENSP00000340507/1-1050 KDTNIDHGQP RPPSNRTVQS PNSSVPSPGL AGPVTMTSVH PPIRSPSASS ENSBTAP00000003151/1-1053 KDTSTDHGQP RPPSNRTVQS PNSSVPSPGL AGPVTMTSVH PPIRSPSASS bmy_07061T0/1-1075 KDTSTDHGQP RPPSNRTVQS PNSSVPSPGL AGPVTMTSVH PPIRSPSASS BACU006757/1-779 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000011720/1-981 VGSRGSSGSS SKPAGADSTH KVPVVMLEPI RIKQENSGPP ENYDFPVVIV ENSP00000340507/1-1050 VGSRGSSGSS SKPAGADSTH KVPVVMLEPI RIKQENSGPP ENYDFPVVIV ENSBTAP00000003151/1-1053 VGSRGSSGSS SKPAGADSTH KVPVVMLEPI RIKQENSGPP ENYDFPVVIV bmy_07061T0/1-1075 VGSRGSSGSS SKPAGADSTH KVPVVMLEPI RIKQENSGPP ENYDFPVVIV BACU006757/1-779 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000011720/1-981 KQESDEESRA QNTNYPRSIL TSLLLNSSQS SASEESVLRS DAPDSTGDQP ENSP00000340507/1-1050 KQESDEESRP QNANYPRSIL TSLLLNSSQS STSEETVLRS DAPDSTGDQP ENSBTAP00000003151/1-1053 KQESDEESRA QNTNYPRSIL TSLLLNSSQS SASEESVLRS DAPDSTGDQP bmy_07061T0/1-1075 KQESDEESRA QNTNYPRSIL TSLLLNSSQS SASEESVLRS DAPDSTGDQP BACU006757/1-779 ---------- --TNYPRSIL TSLLLNSSQS SASEESVLRS DAPDSTGDQP 801 850 ENSTTRP00000011720/1-981 GLNQENSSNG KSEWLDASQK SPLHVGETRK EDDPNEDWCA VCQNGGELLC ENSP00000340507/1-1050 GLHQDNSSNG KSEWLDPSQK SPLHVGETRK EDDPNEDWCA VCQNGGELLC ENSBTAP00000003151/1-1053 GLHQENSSNG KSEWLDASQK SPLHAGEMRK EDDPNEDWCA VCQNGGELLC bmy_07061T0/1-1075 GLNQENSSNG KSEWLDASQK SPLHVGETRK EDDPNEDWCA VCQNGGELLC BACU006757/1-779 GLNQENSSNG KSEWLDASQK SPLHVGETRK EDDPNEDWCA VCQNGGELLC 851 900 ENSTTRP00000011720/1-981 CEKCPKVFHL SCHVPTLANF PSGEWICTFC RDLSKPEVEY DCDAPIHNSE ENSP00000340507/1-1050 CEKCPKVFHL SCHVPTLTNF PSGEWICTFC RDLSKPEVEY DCDAPSHNSE ENSBTAP00000003151/1-1053 CEKCPKVFHL SCHVPTLANF PSGEWICTFC RDLSKPEVEY DCDVPVHNSE bmy_07061T0/1-1075 CEKCPKVFHL SCHVPTLANF PSGEWICTFC RDLSKPEVEY DCDAPVHNSE BACU006757/1-779 CEKCPKVFHL SCHVPTLANF PSGEWICTFC RDLSKPEVEY DCDAPVHNSE 901 950 ENSTTRP00000011720/1-981 KKKTEGLIKL TPIDKRKCER LLLFLYCHEM SLAFQDPVPL T--------- ENSP00000340507/1-1050 KKKTEGLVKL TPIDKRKCER LLLFLYCHEM SLAFQDPVPL T--------- ENSBTAP00000003151/1-1053 KRKTEGFVKL TPIDKRKCER LLLFLYCHEM SLAFQDPVPL T--------- bmy_07061T0/1-1075 KKKIEGLIKL TPIDKRKCER LLLFLYCHEM SLAFQDPVPL TVMIAFCLIM BACU006757/1-779 KKKTEGLIKL TPIDKR---- ---------- ---------- ---------- 951 1000 ENSTTRP00000011720/1-981 ---------V PDYYKIIKNP MDLSTIKKRL QEDYSMYTKP EDFVADFRLI ENSP00000340507/1-1050 ---------V PDYYKIIKNP MDLSTIKKRL QEDYSMYSKP EDFVADFRLI ENSBTAP00000003151/1-1053 ---------V PDYYKIIKNP MDLSTIKKRL QEDYCMYTKP EDFVADFRLI bmy_07061T0/1-1075 KENSKRGNVV PDYYKIIKNP MDLSTIKKRL QEDYSMYTKP EDFVADFRLI BACU006757/1-779 ---------V PDYYKIIKNP MDLSTIKKRL QEDYSMYTKP EDFVADFRLI 1001 1050 ENSTTRP00000011720/1-981 FQNCAEFNE- ---------- ---------- ---------- ---------- ENSP00000340507/1-1050 FQNCAEFNEP DSEVANAGIK LENYFEELLK NLYPEKRFPK PEFRNESEDN ENSBTAP00000003151/1-1053 FQNCAEFNEP DSEVANAGIK LESYFEELLK NLYPEKRFPK LEFRNDSEDN bmy_07061T0/1-1075 FQNCAEFNEP DSEVANAGIK LESYFEELLK NLYPEKRFPK VEFRNESEDN BACU006757/1-779 FQNCAEFNEP DSEVANAGIK LESYFEELLK NLYPEKRFPK VEFRNESEDN 1051 1100 ENSTTRP00000011720/1-981 ---------- ---------- -------- ENSP00000340507/1-1050 KFSDDSDDDF VQPRKKRLKS IEERQLLK ENSBTAP00000003151/1-1053 KFSDDSDDDF VQPRKKRLKS IEERQLLK bmy_07061T0/1-1075 KFSDDSDDDF VQPRKKRLKS IEERQLLK BACU006757/1-779 KFSDDSDDDF VQPRKKRLKS IEERQLLK