KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:08 2014 Check: 00 .. Name: bmy_06648T0/1-461 Len: 592 Check: 2278 Weight: 1.00 Name: ENSP00000251289/1-432 Len: 592 Check: 9815 Weight: 1.00 Name: ENSBTAP00000003156/1-432 Len: 592 Check: 2285 Weight: 1.00 Name: BACU006530/1-526 Len: 592 Check: 574 Weight: 1.00 Name: ENSTTRP00000001389/1-418 Len: 592 Check: 384 Weight: 1.00 // 1 50 bmy_06648T0/1-461 MAAPMEVAVC TDSAAQLWSC VVWELHSGAN LLTYRGGQAG PRGLALLNGE ENSP00000251289/1-432 MAAPMEVAVC TDSAAPMWSC IVWELHSGAN LLTYRGGQAG PRGLALLNGE ENSBTAP00000003156/1-432 MAAPMEVAVC TDSAAQLWSC VVWELHSGAN LLTYRGGQAG PRGLALLNGE BACU006530/1-526 ----MEVAVC TDSAAQLWSC VVWELHSGAN LLTYRGGQAG PRGLALLNGE ENSTTRP00000001389/1-418 MAAPVEVAVC TDSAAQLWSC VVWELHSGAN LLTYRGGQAG PRGLALLNGE 51 100 bmy_06648T0/1-461 YLLAAQLGKN YISAWELQRK DQLQQKIMCP GPVTCLTTSP NGLYVLAGIA ENSP00000251289/1-432 YLLAAQLGKN YISAWELQRK DQLQQKIMCP GPVTCLTASP NGLYVLAGVA ENSBTAP00000003156/1-432 YLLAAQLGKN YICAWELQRK DQLQQKIMCP GPVTCLTTSP NGLYVLAGIS BACU006530/1-526 YLLAAQLGKN YISAWELQRK DQLQQKIMCP GPVTCLTTSP NGLYVLAGIA ENSTTRP00000001389/1-418 YLLAAQLGKN YISAWELQRK DQLQQKIMCP GPVTCLTTSP NGLYVLAGIT 101 150 bmy_06648T0/1-461 ESIYLWEVST GNLLVILSRH YQDVSCLQFT GDSSHFVSGG KDCLVLAWSL ENSP00000251289/1-432 ESIHLWEVST GNLLVILSRH YQDVSCLQFT GDSSHFISGG KDCLVLVWSL ENSBTAP00000003156/1-432 ENIYLWEVST GNLLVILSRH YQDVSCLQFT GDSSHFISGG KDCLVLAWSL BACU006530/1-526 ESIYLWEVST GNLLVILSRH YQDVSCLQFT GDSSHFVSGG KDCLVLAWSL ENSTTRP00000001389/1-418 ESIYLWEVST GNLLVILSRH YQDVSCLQFT GDSSHFVSGG KDCLVLAWSL 151 200 bmy_06648T0/1-461 CSVLQADPSR TPGPRHVWSR HTLPITDLHC GFGGPLARVA TASLDQTVKL ENSP00000251289/1-432 CSVLQADPSR IPAPRHVWSH HALPITDLHC GFGGPLARVA TSSLDQTVKL ENSBTAP00000003156/1-432 CSVLQADPSR TPAPRHVWSR HTLPITDLHC GFGGPLARVA TASLDQTVKL BACU006530/1-526 CSVLQADPSR TPGPRHVWSR HTLPITDLHC GFGGPLARVA TASLDQTVKL ENSTTRP00000001389/1-418 CSVLQADPSR TPAPRHVWSR HTLPITDLHC GFGGPLARVA TSSLDQTVKL 201 250 bmy_06648T0/1-461 WEISSGELLL SVLFDVSIMA VTMDLAEHHM FCGGSDGSIF QVDLCTWVSG ENSP00000251289/1-432 WEVSSGELLL SVLFDVSIMA VTMDLAEHHM FCGGSEGSIF QVDLFTW--- ENSBTAP00000003156/1-432 WEVSSGELLL SVLFDVGILA VTMDLAEHYM FCGGSDGSIF QVDLCTW--- BACU006530/1-526 WEISSGELLL SVLFDVSIMA VTMDLAEHHM FCGGSDGSIF QVDLCTW--- ENSTTRP00000001389/1-418 WEVSSGELLL SVLFDVSIMA VTMDLAEHHM FCGGSDGSIF QVDLCTW--- 251 300 bmy_06648T0/1-461 RGGLGGARLG AETQPCPVLT GPPTSTARAE REELPAGAGP REGVQRAQVR ENSP00000251289/1-432 ---------- ---------- --PGQRERSF HPEQDAGKVF K--------- ENSBTAP00000003156/1-432 ---------- ---------- --PGQREKSF QPEQEHGKVF R--------- BACU006530/1-526 ---------- ---------- --PGQREKSF QPEQDHGKVF R--------- ENSTTRP00000001389/1-418 ---------- ---------- --PGQREKSF QPEQDHGKVF R--------- 301 350 bmy_06648T0/1-461 GWGRPGGGGG GHCATLPRAP GDLSVPRNQV TCLSVSTDGS VLLSGSHDET ENSP00000251289/1-432 ---------- GH-------- ------RNQV TCLSVSTDGS VLLSGSHDET ENSBTAP00000003156/1-432 ---------- GH-------- ------RNQV TCLSVSTDGS VLLSGSHDET BACU006530/1-526 ---------- GH-------- ------RNQV TCLSVSTDGS VLLSGSHDET ENSTTRP00000001389/1-418 ---------- GH-------- ------RNQV TCLSVSTDGS VLLSGSHDET 351 400 bmy_06648T0/1-461 VRLWDVQSQQ CLRTVALKGG RARSPPGGPG PGGPCPFVHT AGSPGLEQGP ENSP00000251289/1-432 VRLWDVQSKQ CIRTVALKGP VTNAAI---- LLAPVSMLSS DFRPSLPLPH ENSBTAP00000003156/1-432 VRLWDVQSQQ CLRTVTLKGP VTNACI---- MLAPVSMLSS DFRPGLPLPH BACU006530/1-526 VRLWDVQSQQ CLRTVALKGP VTNACI---- MLAPISMLSS DFRPSLPLPH ENSTTRP00000001389/1-418 VRLW------ --------GP VTNACI---- VLAPVSMLSS DCRPSLPLPH 401 450 bmy_06648T0/1-461 RVCLVEGADG NARECQGQVG ---GWRSGGW EPGPIES--- ---------- ENSP00000251289/1-432 FNKHLLGAEH GDEPRHGGLT LRLGLHQQGS EPSYLDRTEQ LQAVLCSTME ENSBTAP00000003156/1-432 FNKHLLGAEH GDEPHRGGLM LRLGLHQQGS EPSYLERVEQ LQAVMSSTLE BACU006530/1-526 FNKHLLGTEH GDEPRHGGLT LRLGLHQQGS EPSYLERLEQ LHRVMCSTLE ENSTTRP00000001389/1-418 FNKHLLGAEH GDEPHHGGLT LRLGLHQQGS EPSYLERAEQ LHGVMCSTLE 451 500 bmy_06648T0/1-461 ----GSRSPL A--------- ----RPRPRD QRLHHAGAHQ HAEL------ ENSP00000251289/1-432 KSVLGGQDQL RVRVTELEDE VRNLRKINRD LFDFSTRFIT RPAK------ ENSBTAP00000003156/1-432 KNVLGGQDQL RIRVTELEDE VRNLRKINRD LFDFSTRIIT HPTK------ BACU006530/1-526 KNVLGGQDQL RIRVAELEDE VRNLRKINRD LFDFSTRIIT RPANLHPVRS ENSTTRP00000001389/1-418 KSVLGGQDQL RIRVAELEDE VRNLRKINRD LFDFSTRIIT RPAK------ 501 550 bmy_06648T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000251289/1-432 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003156/1-432 ---------- ---------- ---------- ---------- ---------- BACU006530/1-526 HPLGFQRVRK IRRGPQNLAE IPLGPRATSP AWALRPQALA LNPFHLQLDW ENSTTRP00000001389/1-418 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_06648T0/1-461 ---------- ---------- ---------- ---------- -- ENSP00000251289/1-432 ---------- ---------- ---------- ---------- -- ENSBTAP00000003156/1-432 ---------- ---------- ---------- ---------- -- BACU006530/1-526 ASPLDTLLDV LVSLLQAHSW EDVGLVLCRV RDPGGLVALW TS ENSTTRP00000001389/1-418 ---------- ---------- ---------- ---------- --