KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:08 2014 Check: 00 .. Name: ENSTTRP00000004601/1-697 Len: 713 Check: 7383 Weight: 1.00 Name: ENSP00000254667/1-700 Len: 713 Check: 2231 Weight: 1.00 Name: ENSBTAP00000003163/1-713 Len: 713 Check: 5284 Weight: 1.00 Name: bmy_01366T0/1-541 Len: 713 Check: 3910 Weight: 1.00 Name: BACU004759/1-480 Len: 713 Check: 1629 Weight: 1.00 // 1 50 ENSTTRP00000004601/1-697 -------MEP FCPLLLAGVS LPLAKAFKGN ETT-----TA QSNWTSTTAG ENSP00000254667/1-700 -------MEP LCPLLLVGFS LPLARALRGN ET------TA DSNETTTTSG ENSBTAP00000003163/1-713 PASSRVAMEP FCPFLLAGVS LPLAKALKGN ETTTTTTPTA QSNWTSTTAG bmy_01366T0/1-541 -------MEP FCPLLLAGVS LPLAKAFKGN ETT-----TA QSNWTSTTAG BACU004759/1-480 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004601/1-697 PPAPGAPQPL LAWLLLPL-- -LLFLFLAAY FFRFRKQRKA VVSSNDKKMP ENSP00000254667/1-700 PPDPGASQPL LAWLLLPLLL LLLVLLLAAY FFRFRKQRKA VVSTSDKKMP ENSBTAP00000003163/1-713 PPAPGAPQPL LAWLLLPLLV FLLFLLLAAY FFRFRKQRKA VVSANDKKMP bmy_01366T0/1-541 PPAPGAPQPL LAWLLLPL-- -LLCLLLAAY VFRFRKQRKA VVSSNDKKMP BACU004759/1-480 ---------- MIW------- ---------- ---------- ---------- 101 150 ENSTTRP00000004601/1-697 NGILEEQEQQ RVMLLSRSPS GPKKYFPIPV GHLEEEIRVR SADDCKRFRE ENSP00000254667/1-700 NGILEEQEQQ RVMLLSRSPS GPKKYFPIPV EHLEEEIRIR SADDCKQFRE ENSBTAP00000003163/1-713 NGILEEQEQQ RVMLLSRSPS GPKKYFPIPV AHLEDEIRAR SADDCKRFRE bmy_01366T0/1-541 NGILEEQEQQ RVMLLSRSPS GPKKYLPIPV GHLEEEIRVR SADDCKRFRE BACU004759/1-480 -----EQKSA TIVMLT---- ---------- ---------- ------NLKE 151 200 ENSTTRP00000004601/1-697 EFNSLPSGHI PGTFELANKE ENREKNRYPN ILPNDHSRVI LSQVDGTPCS ENSP00000254667/1-700 EFNSLPSGHI QGTFELANKE ENREKNRYPN ILPNDHSRVI LSQLDGIPCS ENSBTAP00000003163/1-713 EFNSLPSGHV QGTFELANKE ENREKNRYPN ILPNDHSRVI LSQVDGTPCS bmy_01366T0/1-541 EFN------- ---------- ---------- ---------- ---------- BACU004759/1-480 RKE------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000004601/1-697 DYINASYIDG YKEKNKFIAA QXXXXXXXXX XXXXXWEQKS ATIVMLTNFK ENSP00000254667/1-700 DYINASYIDG YKEKNKFIAA QGPKQETVND FWRMVWEQKS ATIVMLTNLK ENSBTAP00000003163/1-713 DYINASYIDG YKEKNKFIAA QGPKQETVND FRRMIWEQKC ATIVMLTNLK bmy_01366T0/1-541 ---------- ---------- ---------- ---------- ---------- BACU004759/1-480 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000004601/1-697 ERKEEKCYQY WPDQGCWTYG SIRVCVEDCV VLVDYTIRKF CIQSQLPDGC ENSP00000254667/1-700 ERKEEKCHQY WPDQGCWTYG NIRVCVEDCV VLVDYTIRKF CIQPQLPDGC ENSBTAP00000003163/1-713 ERKEEKCYQY WPDQGCWTYG NIRVCVEDCA VLVDYTIRKF CIQSQLPDGC bmy_01366T0/1-541 ----EKCYQY WPDQGCWTYG SIRVCVEDCV VLVDYTIRKF CIH------- BACU004759/1-480 ----EKCYQY WPDQGCWTYG SIRVCVEDCV VLVDYTVRKF CIQSQLPDGC 301 350 ENSTTRP00000004601/1-697 KAPRLVCQLH FTSWPDFGVP FTPIGMLKFL KKVRTLNPTH AGPVVVHCSA ENSP00000254667/1-700 KAPRLVSQLH FTSWPDFGVP FTPIGMLKFL KKVKTLNPVH AGPIVVHCSA ENSBTAP00000003163/1-713 KAPRLVCQLH FTSWPDFGVP FTPIGMLKFL KKVRTLNPAH AGPIVVHCSA bmy_01366T0/1-541 ---------- ---------- ---------- ---------- ---------A BACU004759/1-480 KAPRLVCQLH FTSWPDFGVP FTPIGMLKFL KKVRTLNPTH AGPIVVHCSA 351 400 ENSTTRP00000004601/1-697 GVGRTGTFIV IDAMMDMIHT EQKVDVFDFV SRIRNQRPQM VQTDMQYTFI ENSP00000254667/1-700 GVGRTGTFIV IDAMMAMMHA EQKVDVFEFV SRIRNQRPQM VQTDMQYTFI ENSBTAP00000003163/1-713 GVGRTGTFIV IDAMMDMVHA EQKVDVFDFV SRIRNQRPQM VQTDMQYTFI bmy_01366T0/1-541 GVGRTGTFIV IDAMMDMMHA EQKVGVFDFV SRIRNQRPQM VQTDMQYTFI BACU004759/1-480 GVGRTGTFMV IDAMMDMMHA EQKVDVFDFV SRIRNQRPQM VQTDMQYTFI 401 450 ENSTTRP00000004601/1-697 YQALLEYYLY GDTELDVSSL EKHLQTLHGA TTHFDQAGLE EEFRKLTNVR ENSP00000254667/1-700 YQALLEYYLY GDTELDVSSL EKHLQTMHGT TTHFDKIGLE EEFRKLTNVR ENSBTAP00000003163/1-713 YQALLEYYLY GDTELDVSSL EKHLQALHGP TAHFDKIGLE EEFRKLTNVR bmy_01366T0/1-541 YQALLEYYLY GDTELDVSSL EKHLQTLHGS TTHFDKVGLE EEFKKLTNVR BACU004759/1-480 YQALLEYYLY GDTELDVSSL EKHLQTLHGS ATHFDKVGLE EEFRKLTNVR 451 500 ENSTTRP00000004601/1-697 IMKENMRTGN LPANMKKARV IQIIPYDFNR VILSMKRGQE YTDYINASFI ENSP00000254667/1-700 IMKENMRTGN LPANMKKARV IQIIPYDFNR VILSMKRGQE YTDYINASFI ENSBTAP00000003163/1-713 IMKENMRTGN LPANMKKARV IQIIPYDFNR VILSMKRGQE YTDYINASFI bmy_01366T0/1-541 IMKENMRTGN LPANMKKARV IQIIPYDFNR VILSMKRGQE YTDYINASFI BACU004759/1-480 IMKENMRTGN LPANMKKARV IQIIPYDFNR VILSMKRGQE YTDYINASFI 501 550 ENSTTRP00000004601/1-697 DGYRQKDYFI ATQGPLAHTV EDFWRMVWER ECHTIVMLTE VQEREQDKCC ENSP00000254667/1-700 DGYRQKDYFI ATQGPLAHTV EDFWRMIWEW KSHTIVMLTE VQEREQDKCY ENSBTAP00000003163/1-713 DGYRQKDYFI ATQGPLAHTV EDFWRMVWEW KCHTIVMLTE VQEREQDKCY bmy_01366T0/1-541 DGYRQKDYFI ATQGPLAHTV EDFWRMVWEW KCHTIVMLTE VQEREQDKCH BACU004759/1-480 DGYRQKDYFI ATQGPLAHTV EDFWRMVWEW KCHTIVMLTE VQEREQDKCY 551 600 ENSTTRP00000004601/1-697 QYWPTEGSVT HGEITIEIKS DTLSEAISIR DFLVTFNQPL APQEEQTRIV ENSP00000254667/1-700 QYWPTEGSVT HGEITIEIKN DTLSEAISIR DFLVTLNQPQ ARQEEQVRVV ENSBTAP00000003163/1-713 QYWPTEGSVT HGEITIEIKS DTLSEAISIR DFLVTFNQPL ARPEEQTRVV bmy_01366T0/1-541 QYWPTEGSVT HGEITIEIKS DTLSEAISIR DFLVTFNQPL ARQEEQTRVV BACU004759/1-480 QYWPTEGSVT HGEITIEIKS DTLSEAISIR DFLVTFNQPL ARQEEQTRVV 601 650 ENSTTRP00000004601/1-697 RQFHFRGGED MSLAAEGKCM IG-VEETKKH QQQTGDYAIP ELRXXXXXXX ENSP00000254667/1-700 RQFHFHGWPE IGIPAEGKGM IDLIAAVQKQ QQQTGNHPIT VHCSAGAGRT ENSBTAP00000003163/1-713 RQFHFHGWPE IGIPAEGKGM IDLIAAVQKQ QQQTGNHPIT VHCSAGAGRT bmy_01366T0/1-541 RQFHFHGWPE IGIPAEGKGM IDLIAAVQKQ QQQTGNHPIT VHCSAGAGRT BACU004759/1-480 RQFHFHGWPE IGIPAEGKGM IDLIAAVQKQ QQQTGNHPIT VHCSAGAGRT 651 700 ENSTTRP00000004601/1-697 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE QYEFCYKVVQ ENSP00000254667/1-700 GTFIALSNIL ERVKAEGLLD VFQAVKSLRL QRPHMVQTLE QYEFCYKVVQ ENSBTAP00000003163/1-713 GTFIALSNIL ERVKAEGLLD VFQAVKSLRL QRPHMVQTLE QYEFCYKVVQ bmy_01366T0/1-541 GTFIALSNIL ERVKAEGLLD VFQAVKSLRL QRPHMVQTLE QYEFCYKVVQ BACU004759/1-480 GTFIALSNIL ERVKAEGLLD VFQAVKSLRL QRPHMVQTLE QYEFCYKVVQ 701 750 ENSTTRP00000004601/1-697 DFIDIFSDYA NFK ENSP00000254667/1-700 DFIDIFSDYA NFK ENSBTAP00000003163/1-713 DFIDIFSDYA NFK bmy_01366T0/1-541 DFIDIFSDYA NFK BACU004759/1-480 DFIDIFSDYA NFK