KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:13 2014 Check: 00 .. Name: ENSBTAP00000003175/1-564 Len: 776 Check: 8334 Weight: 1.00 Name: ENSP00000410890/1-546 Len: 776 Check: 7703 Weight: 1.00 Name: bmy_20286T0/1-614 Len: 776 Check: 3064 Weight: 1.00 Name: BACU010915/1-635 Len: 776 Check: 678 Weight: 1.00 Name: ENSTTRP00000014869/1-285 Len: 776 Check: 556 Weight: 1.00 // 1 50 ENSBTAP00000003175/1-564 ---------- ---------- ---------- ---------- ---------- ENSP00000410890/1-546 MAE------- --AAP----- ---------- ---ARDPETD KHTEDQSPST bmy_20286T0/1-614 MANCVRVGCT WVESPLSLQG LCLYFGNPVL STHPEAPERD KQTGDERPST BACU010915/1-635 MANCVRVGCT WVESPLSLQG LCLYFGNPVL STHPEAPERD KQTGDERPST ENSTTRP00000014869/1-285 MAD------- --EAP----- ---------- ---APAPERD RQIGDERPLT 51 100 ENSBTAP00000003175/1-564 ---------- -NSYLYSTEI TLWTVVAAIQ ALEKKVDSCL TRLLTLEGRT ENSP00000410890/1-546 PLPQP--AAE KNSYLYSTEI TLWTVVAAIQ ALEKKVDSCL TRLLTLEGRT bmy_20286T0/1-614 PSPSPQLAAE KSSYLYSTEI TLWTVVAAIQ ALEKKVDSCL TRLLTLEGRT BACU010915/1-635 PSPSPQLAAE KSSYLYSTEI TLWTVVAAIQ ALEKKVDSCL ARLLTLEGRT ENSTTRP00000014869/1-285 PSPSPQLAAE KSSYLYSTEI TLWTVVAAIQ ALEKKVDSCL ARLLTLEGRT 101 150 ENSBTAP00000003175/1-564 GTAEKKLADC EKTAVELGNQ LEGKWAVLGT LLQEYGLLQR RLENMENLLR ENSP00000410890/1-546 GTAEKKLADC EKTAVEFGNQ LEGKWAVLGT LLQEYGLLQR RLENVENLLR bmy_20286T0/1-614 GKAEKKLADC EKTAVEFGNH MEGKWAVLGT LLQEYGLLQR RLENVENLLR BACU010915/1-635 GTAEKKLADC EKTAVELGNQ LEGKWAVLGT LLQEYGLLQR RLENVENLLR ENSTTRP00000014869/1-285 GKAEKKLADC EKTTVELGNQ LEGKWAVLGT LLQEYGLLQR RLENVENLLR 151 200 ENSBTAP00000003175/1-564 NRNFWILRLP PGSKGEVPR- ---------- ---PEWGKLD EWQKELYKHV ENSP00000410890/1-546 NRNFWILRLP PGSKGEAPKV PVTFDDVAVY FSELEWGKLE DWQKELYKHV bmy_20286T0/1-614 NRNFWILRLP PGSKGEAPKV PVTFDDVAVY FSEXEWGKLD EWQKELYKHV BACU010915/1-635 NRNFWILRLP PGSKGEAPKV PVTFDDVAVY FSEPEWGKLD EWQKELYKHV ENSTTRP00000014869/1-285 NRNFWILRLP PGSKGEAPKV PVTFDDVAVY FSEPEWGKLD EWQKELYKHV 201 250 ENSBTAP00000003175/1-564 MRGNYEMLVS LDYAISKPDI LTRMERGEEP CPEGPWGREE GNEREEVCPR ENSP00000410890/1-546 MRGNYETLVS LDYAISKPDI LTRIERGEEP CLD-RWGQEK GNEVEVGRPR bmy_20286T0/1-614 MRGNYETLVS LDYAISKPDI LTRMERGEEP CPEGPRGREE GSDREDACPR BACU010915/1-635 MRGNYETLVS LDYAISKPDI LTRMERGEEP CPEGPRGQEE ASDREDACPR ENSTTRP00000014869/1-285 MRGNYETLVS LDYAISKPDI LTRMERGEEP CPEGPRGREE GSDREEARPR 251 300 ENSBTAP00000003175/1-564 RPGAEGPQPV SAFCLQLNGR KTLQMGSHQP ALPGTSCPAW GQVSEGRRPH ENSP00000410890/1-546 MM-------- ---------- ---------- ---------- ---------- bmy_20286T0/1-614 RL-------- ---------- ---------- ---------- ---------- BACU010915/1-635 RL-------- ---------- ---------- ---------- ---------- ENSTTRP00000014869/1-285 RL-------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000003175/1-564 GLSRASGDLG APLGEGAGLH DGPGERSPP- PNRKGSSLPP FHPGSGFGGG ENSP00000410890/1-546 ---------- -----GTGL- -------PPY PEHLTSPLSP ---------- bmy_20286T0/1-614 ---------- -----GAGL- -------PPY PEHISSPVSP ---------- BACU010915/1-635 ---------- -----GAGL- -------PPY PEHISSPVSP ---------- ENSTTRP00000014869/1-285 ---------- -----GAGL- -------PPY PEHTSSPVSP ---------- 351 400 ENSBTAP00000003175/1-564 TLKRSRGRSE KSVVRGWLQR KPEEQQLEDV GENTGLQAGL RPGPASPAMA ENSP00000410890/1-546 ---------- -------AQE ELKEGQAPKQ QQDSEARVA- PAGPEAG--- bmy_20286T0/1-614 ---------- -------AQK EPKEGQASKH QQDSETRVT- PPETSTGPLA BACU010915/1-635 ---------- -------AQK EPKEGQASKH QQDSETRVT- PPETSTGPPA ENSTTRP00000014869/1-285 ---------- -------ARK EPKEGQASKH QQDSETRVT- PPETNTG--- 401 450 ENSBTAP00000003175/1-564 TPAGWGFVTW PSRSEPAKSP ARSRLHL--- --PGGDAVVI KTEAPSEDE- ENSP00000410890/1-546 ---------- ---------- ---------- -----GGVAI KTEAQSEDE- bmy_20286T0/1-614 STSVLSSVKR EEESSDGESP TSPPRDILPG MGPGGGGMVI KTEAQSEDE- BACU010915/1-635 STSVLSSVKR EEESSDRESP TSPPRDILPG MGPV-EGVMI KQEIQYTQDG ENSTTRP00000014869/1-285 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000003175/1-564 ---------- -------MTP EPP------- ---FPGASPS RAACGIP-KG ENSP00000410890/1-546 ---------- -------MTP ERL------- ---FLGVSRG QTECRIP-RG bmy_20286T0/1-614 ---------- -------MMP EQL------- ---YLGESPS QPECRLP-KG BACU010915/1-635 SADLPGEFSG IAEEHAFLSP EQPELWDGQG RSVLLESGPG DTNPEEPMEG ENSTTRP00000014869/1-285 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000003175/1-564 PRSRTGGSSR LHAGGVPRAR AGDSRSTGA- --GTQPPRVL PRRQERAFPC ENSP00000410890/1-546 PRNRPGGPSR HQAQGMPRVR AGEPRPPGA- --SGETPRVL SRRRQRAFPC bmy_20286T0/1-614 PRSRTGGSGR LHSGAVPRAR AGDPLPPGAP GPGGEPPRIL PRRRERAFPC BACU010915/1-635 SRDPSGGRT- --LGCPPKQK SNRQLQLGQ- --QCGQGLKL KRDTAGPYGC ENSTTRP00000014869/1-285 ---------- ---------- ----MALG-- ---------- ---------- 551 600 ENSBTAP00000003175/1-564 PDCGQSFRLK INLTIHQRSH VEEEHR--EA RGGSPTG--- ---------- ENSP00000410890/1-546 PDCGQSFRLK INLTIHQRTH VEEGRQ--EA PGRSPTSCGD -SQAMLEPGE bmy_20286T0/1-614 PDCGQSFRLK INLTIHQRTH AEEEQQRGEA RGGEASGAGA RAHPALEPGE BACU010915/1-635 SECEAIFRCK QQLAAHLRTH ---------- SGWEPYTASE -------PEE ENSTTRP00000014869/1-285 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000003175/1-564 ---------- ---------- ---------- ---------C SECLRFFQQR ENSP00000410890/1-546 VVVPGPVIRW LPEEPEGRRS VAGGRALVGR RPAASKMYHC SECLRFFQQR bmy_20286T0/1-614 VVVPGPVIRW LPEGPEGR-- ----RCFVGR RPAAAKVYHC SECLRFFQQR BACU010915/1-635 SLRPRPRPRL KPQ------- ---------- -PRKAKLHQC DVCTRSFSCR ENSTTRP00000014869/1-285 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000003175/1-564 KSLLLHQRLH TGNSQG---- ---------- --------WP A------CPY ENSP00000410890/1-546 KSLLLHQRLH TGNGQG---- ---------- --------WP A------CPY bmy_20286T0/1-614 KSLLLHQRLH TGDSQG---- ---------- --------WP A------CPY BACU010915/1-635 VSLLTHQRCH LQEGPGAGHR VQERFSPNSL VALPGHIPWR KSRSALICGY ENSTTRP00000014869/1-285 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000003175/1-564 CGKAFRRPSD LFRHQRIHTG ERPYRCPQCG RAFNRNHHLA VHMQTHARGQ ENSP00000410890/1-546 CGKAFRRPSD LFRHQRIHTG ERPYQCPQCG RTFNRNHHLA VHMQTHARGQ bmy_20286T0/1-614 CGKAFRRPSD LFRHQRIHTG ERPYPCPECG RAFNRNHHLA VHMQTHARGQ BACU010915/1-635 CGKSFSHPSD LVRHQRIHTG ERPYPCPECG RAFNRNHHLA VHMQTHARDQ ENSTTRP00000014869/1-285 --------TD LQREAQIQ-- ---------- ---------- ---------- 751 800 ENSBTAP00000003175/1-564 VGPPCPGPP- ---------- ------ ENSP00000410890/1-546 VGPHFPAAPA RHGSLPLPWP SRKEEG bmy_20286T0/1-614 GGPHVPVTPA RLGSPLLARP SHSEEG BACU010915/1-635 GGPHVPVTPA RLGSPLLARP SHSEEG ENSTTRP00000014869/1-285 ---------- ---------- ------