KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:17 2014 Check: 00 .. Name: BACU011021/1-161 Len: 1451 Check: 7313 Weight: 1.00 Name: ENSP00000231498/1-1391 Len: 1451 Check: 4301 Weight: 1.00 Name: ENSTTRP00000001088/1-1391 Len: 1451 Check: 3533 Weight: 1.00 Name: bmy_07501T0/1-1304 Len: 1451 Check: 8242 Weight: 1.00 Name: ENSBTAP00000003193/1-1391 Len: 1451 Check: 5838 Weight: 1.00 // 1 50 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001088/1-1391 ---------- ---------- ---------- ---------- ---------- bmy_07501T0/1-1304 AEKLASNSPP YESEVRHALA PGRLFGARAL SFGAELASWV FSYFSLLFDF ENSBTAP00000003193/1-1391 ---------- ---------- ---------- ---------- ---------- 51 100 BACU011021/1-161 ---------- ---------M PASTSATALQ EALENAGCLI DRQLQGDCMF ENSP00000231498/1-1391 ---------- MPSSLLGAAM PASTSAAALQ EALENAGRLI DRQLQEDRMY ENSTTRP00000001088/1-1391 ---------- MPSSLLGSAM PASTSAAALQ EALENAGRLI DRQLQEDRMY bmy_07501T0/1-1304 LRSLPSPIFD MPSSLLGSAM PASTSAAALQ EALENAGRLI DRQLQEDRMY ENSBTAP00000003193/1-1391 ---------- MPSSLLGSAM PASTSAAALQ EALENAGRLI DRQLQEDRMY 101 150 BACU011021/1-161 PDLSDLLMGS APNNPTVSGM SDMVYPLQGP GLLSVPNLPE ISSIRRVPLP ENSP00000231498/1-1391 PDLSELLMVS APNNPTVSGM SDMDYPLQGP GLLSVPNLPE ISSIRRVPLP ENSTTRP00000001088/1-1391 PDLSDLLMVS APNNPTVSGM SDMDYPLQGP GLLSVPNLPE ISSIRRVPLP bmy_07501T0/1-1304 PDLSDLLMVS APNNPTVSGM SDMDYPLQGP GLLSVPNLPE ISSIRRVPLP ENSBTAP00000003193/1-1391 PDLSELLMVS APNNPTVSGM SDMDYPLQGP GLLSVPNLPD ISSIRRVPLP 151 200 BACU011021/1-161 PELVEQFGHI ---------- ---------- --LLLY---- ---------- ENSP00000231498/1-1391 PELVEQFGHM QCNCMMGVFP PISRAWLTID SDIFMWNYED GGDLAYFDGL ENSTTRP00000001088/1-1391 PELVEQFGHM QCNCMMGVFP AISRAWLTID SDIFMWNYED GGDLAYFDGL bmy_07501T0/1-1304 PELVEQFGHM QCNCMMGVFP PISRAWLTID SDVFMWNYED GGDLAYFDGL ENSBTAP00000003193/1-1391 PELVEQFGHM QCNCMMGVFP PISRAWLTID SDIFMWNYED GGDLAYFDGL 201 250 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 SETILAVGLV KPKAGIFQPH VRHLLVLATP VDIVILGLSY ANLQTGSGVL ENSTTRP00000001088/1-1391 NETILAVGLV KPKAGIFQPH VRHLLVLATP VDIVILGLSY TNLQTGSGVL bmy_07501T0/1-1304 SETILAVGLV KPKAGIFQPH VRHLLVLATP VDVVILGLS- ------SGVL ENSBTAP00000003193/1-1391 SETILAVGLV KPKPGIFQPH VRHLLVLATP VDIVILGLSY TNLQTGSGVL 251 300 BACU011021/1-161 ---------L HPTP--SIPT NQQ------- ---------- ---------- ENSP00000231498/1-1391 NDSLSGGMQL LPDPLYSLPT DNTYLLTITS TDNGRIFLAG KDGCLYEVAY ENSTTRP00000001088/1-1391 NDSMCGGMQL LPDPLYSLPT DNTYLLTITS TDNGRIFLAG KDGCLYEVAY bmy_07501T0/1-1304 NDSMCGGMQL LPDPLYSLPT DNTYLLAITS TDNGRIFLAG KDGCLYEVAY ENSBTAP00000003193/1-1391 NDSMCGGMQL LPDPLYSLPT DNTYLLTITS TDNGRIFLAG KDGCLYEVAY 301 350 BACU011021/1-161 ---------- ----NKDKSS ---------- ---------- ---------- ENSP00000231498/1-1391 QAEAGWFSQR CRKINHSKSS LSFLVPSLLQ FTFSEDDPIL QIAIDNSRNI ENSTTRP00000001088/1-1391 QAEAGWFSQR CRKINHSKSA LSFLVPSLLQ FTFSEDDPIV QIAIDNSRNI bmy_07501T0/1-1304 QAEAGWFSQR CRKINHSKSA LSFLVPSLLQ FTFSEDDPIV QIAIDNSRNI ENSBTAP00000003193/1-1391 QAEAGWFSQR CRKINHSKSP LSFLVPSLLQ FTFSEDDPIV QIAVDNSRNI 351 400 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 LYTRSEKGVI QVYDLGQDGQ GMSRVASVSQ NAIVSAAGNI ARTIDRSVFK ENSTTRP00000001088/1-1391 LYTRSEKGVI QVYDLGHDGQ GMNRVASVSQ NSIVSAAGNI ARTIDRSVFK bmy_07501T0/1-1304 LYTRSEKGVI QVYDLGHDGQ GMNRVASVSQ NSIVSAAGNI ARTIDRSVFK ENSBTAP00000003193/1-1391 LYTRSEKGVI QVYDLGHDGQ GMNRVASVSQ NSIVSAAGNI ARTIDRSVFK 401 450 BACU011021/1-161 ---------- ---------- ---------- ---------- RP-------- ENSP00000231498/1-1391 PIVQIAVIEN SESLDCQLLA VTHAGVRLYF STCPFRQPLA RPNTLTLVHV ENSTTRP00000001088/1-1391 PIVQIAVIEN SESLDCQLLA VTHAGVRLYF STCPFRQPWT RPNTLTLVHI bmy_07501T0/1-1304 PIVQIAVIEN SESLDCQLLA VTHAGVRLYF STCPFRQPWA RPNTLTLVHI ENSBTAP00000003193/1-1391 PIVQIAVIEN SESLDCQLLA VTHAGVRLYF STCPFRQPLA RPNTLTLVHV 451 500 BACU011021/1-161 ---------- --ARPTKAER A--------- ---------- ---------- ENSP00000231498/1-1391 RLPPGFSASS TVEKPSKVHR ALYSKGILLM AASENEDNDI LWCVNHDTFP ENSTTRP00000001088/1-1391 RLPPGFSASS TVEKPSKVHK ALYSKGILLM AASENEDNDI LWCVNHDTFP bmy_07501T0/1-1304 RLPPGFSASS TVEKPSKVHK ALYSKGILLM AASENEDNDI LWCVNHDTFP ENSBTAP00000003193/1-1391 RLPPGFSASS TVEKPSKVHK ALYSKGILLM AASENEDNDI LWCVNHDTFP 501 550 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 FQKPMMETQM TAGVDGHSWA LSAIDELKVD KIITPLNKDH IPITDSPVVV ENSTTRP00000001088/1-1391 FQKPMMETQM TTRVDGHSWA LSAIDEFKVD KIITPLNKDH IPITDSPVVV bmy_07501T0/1-1304 FQKPMMETQM TTRVDGHSWA LSAIDEFKVD KIITPLNKDH IPITDSPVVV ENSBTAP00000003193/1-1391 FQKPMMETQM TTRVDGHSWA LSAIDELKVD KIITPLNKDH IPITDSPVVV 551 600 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 QQHMLPPKKF VLLSAQGSLM FHKLRPVDQL RHLLVSNVGG DGEEIERFFK ENSTTRP00000001088/1-1391 QQHMLPPKKF VLLSAQGSLM FHKLRPVDQL RHLLVSNVGG DGEEIERFFK bmy_07501T0/1-1304 QQHMLPPKKF VLLSAQGSLM FHKLRPVDQL RHLLVSNVGG DGEEIERFFK ENSBTAP00000003193/1-1391 QQHMLPPKKF VLLSAQGSLM FHKLRPVDQL RHLLVSNVGG DGEEIERFFK 601 650 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 LHQEDQACAT CLILACSTAA CDREVSAWAT RAFFRYGGEA QMRFPTTLPP ENSTTRP00000001088/1-1391 LHQEDQACAT CLILACSTAA CDREVSAWAT RAFFRYGGEA QMRFPATLPA bmy_07501T0/1-1304 LHQ------- ---------- ---------- ---------- ---------- ENSBTAP00000003193/1-1391 LHQEDQACAT CLILACSTAA CDREVSAWAT RAFFRYGGEA QMRFPTTLPT 651 700 BACU011021/1-161 ---------- --------PT G--------- ---------- ---------- ENSP00000231498/1-1391 PSNVGPILGS PVYSSSPVPS GSPYPNPSFL GTPSHGIQPP AMSTPVCALG ENSTTRP00000001088/1-1391 PSNVGPILGS PVYSGSPIPS GSTYLNPSFL GTPSQGVHPP AMSTPVCAMG bmy_07501T0/1-1304 ---------- --CTSSPVPS GSTYLNPSFL GTPSQGVHPP AMSTPVCAVG ENSBTAP00000003193/1-1391 PSNVGPILGS PVYSSSPVPS GTLYPNPSFL GTPSQGVHPP AVSTPVCALG 701 750 BACU011021/1-161 RPADR----- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 NPATQATNMS CVTGPEIVYS GKHNGICIYF SRIMGNIWDA SLVVERIFKS ENSTTRP00000001088/1-1391 NPATQATSMS CMAGPEIVYS GKHNGICIYF SRIMGNIWDA SLVVERIFKS bmy_07501T0/1-1304 NPATQATSMS CMAGPEIV-- ---------- -----NIWDA SLVVERVFKS ENSBTAP00000003193/1-1391 SPATQATSMS CMAGPEIVYS GKHNGICIYF SRIMGNIWDA SLVVERVFKS 751 800 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 GNREITAIES SVPCQLLESV LQELKGLQEF LDRNSQFAGG PLGNPNTTAK ENSTTRP00000001088/1-1391 GNREITAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGG PLGNPNTTAK bmy_07501T0/1-1304 GNREITAIES SVPSQLLESV LQELK----- ---------- ---------- ENSBTAP00000003193/1-1391 GNREITAIES SVPSQLLESV LLELKGLQEF LDRNSQFTGG PLGNPNTAAK 801 850 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 VQQRLIGFMR PENGNPQQMQ QELQRKFHEA QLSEKISLQA IQQLVRKSYQ ENSTTRP00000001088/1-1391 VQQRLIGFMR PENGNTQQMQ QELQRKFHEA QLSEKVSLQA IQQLVRKSYQ bmy_07501T0/1-1304 ---------- ---------- --------EA QLSEKVSLQA IQQLVRKSYQ ENSBTAP00000003193/1-1391 VQQRLIGFMR PENGNTQQMQ QELQRKLHEA QLSEKISLQA IQQLVRKSYQ 851 900 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 ALALWKLLCE HQFTIIVAEL QKELQEQLKI TTFKDLVIRD KELTGALIAS ENSTTRP00000001088/1-1391 ALALWKLLCE HQFTAIVGEL QKEFQEQLKI TTFKDLVIRD KELTGALIAS bmy_07501T0/1-1304 ALALWKLLCE HQFTAIVGEL QKEFQEQLKI TTFKDLVIRD KELSGALIAS ENSBTAP00000003193/1-1391 ALALWKLLCE HQFTVIVGEL QKEFQEQLKI TTFKDLVIRD KELTGALIAS 901 950 BACU011021/1-161 ---------- ---------- ---------- ------TSVL LQRSHR---- ENSP00000231498/1-1391 LINCYIRDNA AVDGISLHLQ DICPLLYSTD DAICSKANEL LQRSRQVQNK ENSTTRP00000001088/1-1391 LINCYIRDNA AVDGISLHLQ DICPLLYSTD DAVCSKANEL LQRSRQVQNK bmy_07501T0/1-1304 LINCYIRDNA AVDGISLHLQ DICPLLYSTD DA----ANEL LQRSRQVQNK ENSBTAP00000003193/1-1391 LINCYIRDNA AVDGISLHLQ DICPLLYSTD DAICSKANEL LQHSRQVQNK 951 1000 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 TEKERMLRES LKEYQKISNQ VDLSNVCAQY RQVRFYEGVV ELSLTAAEKK ENSTTRP00000001088/1-1391 IEKERMLRES LKEYQKISNQ VDLSSVCAQY RQVRFYEGVV ELSLTAAEKK bmy_07501T0/1-1304 IEKERMLRES LKEYQKISNQ VDLSSVCAQY RQVRFYEGVV ELSLTAAEKK ENSBTAP00000003193/1-1391 IEKERMLRES LKEYQKISNQ VDLSSVCAQY RQVRFYEGVV ELSLTAAEKK 1001 1050 BACU011021/1-161 ---------- ---------- ---------- ---GATLQLP RLSNGGQRVP ENSP00000231498/1-1391 DPQGLGLHFY KHGEPEEDIV GLQAFQERLN SYKCITDTLQ ELVNQSKAAP ENSTTRP00000001088/1-1391 DPQGLGLHFY KHGEPEEDIV GLQAFQERLN SYKCITDTLQ ELVNQSKAAP bmy_07501T0/1-1304 DPQGLGLHFY KHGEPEEDIV GLQAFQERLN SYKCITDTLQ ELVNQSKAAP ENSBTAP00000003193/1-1391 DPQGLGLHFY KHGEPEEDIV GLQAFQERLN SYKCITDTLQ ELVNQSKAAP 1051 1100 BACU011021/1-161 KS-------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 QSPSVPKKPG PPVLSSDPNM LSNEEAGHHF EQMLKLSQRS KDELFSIALY ENSTTRP00000001088/1-1391 QSPSVPKKPG PPVLSSDPNM LSNEEAGHHF EQMLKLSQRS KDELFSIALY bmy_07501T0/1-1304 QSPSVPKKPG PPVLSSDPNM LSNEEAGHHF EQMLKLSQRS KDELFSIALY ENSBTAP00000003193/1-1391 QSPSVPKKPG PPVLSSDPNM LSNEEAGHHF EQMLKLSQRS KDELFSIALY 1101 1150 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 NWLIQVDLAD KLLQVASPFL EPHLVRMAKV DQNRVRYMDL LWRYYEKNRS ENSTTRP00000001088/1-1391 NWLIQADLAD KLLQIASPFL EPHLVRMAKV DQNKVRYMDL LWRYYEKNRS bmy_07501T0/1-1304 NWLIQADLAD KLLQIASPFL EPHLVRMAKV DQNKVRYMDL LWRYYEKNRS ENSBTAP00000003193/1-1391 NWLIQADLAD KLLQIASPFL EPHLVRMAKV DQNKVRYMDL LWRYYEKNRS 1151 1200 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 FSNAARVLSR LADMHSTEIS LQQRLEYIAR AILSAKSSTA ISSIAADGEF ENSTTRP00000001088/1-1391 FSNAARVLSK LADMHSTEIS LQQRLEYIAR AILSAKSSTA ISSIAADGEF bmy_07501T0/1-1304 FNNAARVLSK LADMHSTEIS LQQRLEYIAR AILSAKSSTA ISSIAADGEF ENSBTAP00000003193/1-1391 FSSAARVLSK LADMHSTEIS LQQRLEYIAR AILSAKSSTA ISSTAADGEF 1201 1250 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 LHELEEKMEV ARIQLQIQET LQRQYSHHSS VQDAVSQLDS ELMDITKLYG ENSTTRP00000001088/1-1391 LHELEEKMEV ARIQLQIQET LQRQYSHHSS VQDAISQLDS ELMDITKLYG bmy_07501T0/1-1304 LHELEEKMEV ARIQLQIQET LQRQYSHHSS VQDAISQLDS ELMDITKLYG ENSBTAP00000003193/1-1391 LHELEEKMEV ARIQLQIQET LQRQYSHHSS VQDAISQLDS ELMDITKLYG 1251 1300 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 EFADPFKLAE CKLAIIHCAG YSDPILVQTL WQDIIEKELS DSVTLSSSDR ENSTTRP00000001088/1-1391 EFADPFKLAE CKLAIIHCAG YSDPILVQTL WQDIIEKELN ESVTLSSPDR bmy_07501T0/1-1304 EFADPFKLAE CKLAIIHCAG YSDPILVQTL WQDIIEKELN ESVTLSSPDR ENSBTAP00000003193/1-1391 EFADPFKLAE CKLAIIHCAG YSDPILVQTL WQDIIEKELN ESVTLSSPDR 1301 1350 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 MHALSLKIVL LGKIYAGTPR FFPLDFIVQF LEQQVCTLNW DVGFVIQTMN ENSTTRP00000001088/1-1391 MHALSLKIVL LGKMYAGTPR FFPLDFIVQF LEQQVCTLNW DVGFVIQTMN bmy_07501T0/1-1304 MHALSLKTVL LGKMYASTPR FFP------- LEQQVCTLNW DVGFVIQTMN ENSBTAP00000003193/1-1391 MHALSLKIVL LGKIYAGTPR FFPLDFIVQF LEQQVCTLNW DVGFVIQTMN 1351 1400 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 EIGVPLPRLL EVYDQLFKSR DPFWNRMKKP LHLLDCIHVL LIRYVENPSQ ENSTTRP00000001088/1-1391 EIGVPLPRLL EVYDHLFKSR DPFWNRMKKP LHLLDCIHVL LTRYVENPSQ bmy_07501T0/1-1304 EIGVPLPRLL EVYDHLFKSR DPFWNRMKKP LHLLDCIHVL LTRYVENPSQ ENSBTAP00000003193/1-1391 EIGVPLPRLL EVYDHLFKSR DPFWNRMKKP LHLLDCIHVL LTRYVENPSQ 1401 1450 BACU011021/1-161 ---------- ---------- ---------- ---------- ---------- ENSP00000231498/1-1391 VLNCERRRFT NLCLDAVCGY LVELQSMSSS VAVQAITGNF KSLQAKLERL ENSTTRP00000001088/1-1391 VLNCERRRFT NLCLDAVCGY LVELQSMSSS VTVQTITGNF KSLQAKLERL bmy_07501T0/1-1304 VLNCERRRFT NLCLDAVCGY LVELQSMSSS AAIQAITGNF KSLQAKLERL ENSBTAP00000003193/1-1391 VLNCERRRFT NLCLDAVCGY LVELQSMSSS AAVQAITGNF KSLQAKLERL 1451 1500 BACU011021/1-161 - ENSP00000231498/1-1391 H ENSTTRP00000001088/1-1391 H bmy_07501T0/1-1304 H ENSBTAP00000003193/1-1391 H