KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:17 2014 Check: 00 .. Name: ENSP00000454380/1-235 Len: 235 Check: 6318 Weight: 1.00 Name: ENSBTAP00000003200/1-226 Len: 235 Check: 8870 Weight: 1.00 Name: bmy_01889T0/1-149 Len: 235 Check: 2730 Weight: 1.00 Name: BACU018843/1-226 Len: 235 Check: 8628 Weight: 1.00 Name: ENSTTRP00000003852/1-226 Len: 235 Check: 9257 Weight: 1.00 // 1 50 ENSP00000454380/1-235 MEQDDPVEAL TELRERRLGA LELLQAAAGS GLAAYAVWAL LLQPGFRRVP ENSBTAP00000003200/1-226 MEQDDPAEAL TELRERRPGP LELLQVAAGS GLAVYAVWAL LLQPGFRRVP bmy_01889T0/1-149 MEQDDPAEAL TELRERRLGA LELLQVAAGS GLVAYAVWAL LLQPGFRRVP BACU018843/1-226 MEQDDPAEAL TELRERQLGA LELLQVAAGS GLVAYAVWAL LLQTGFRRVP ENSTTRP00000003852/1-226 MEQDDPAEAL TELRERRLGA LELLQVAAGS GLVTYAVWAL LLQPGFRRVP 51 100 ENSP00000454380/1-235 LRLQVPYVGA SARQVEHVLS LLRGRPGKTV DLGSGDGRIV LAAHRCGLRP ENSBTAP00000003200/1-226 LRLQVPYVGA SARQVEHVLS LLRGRPGKTV DLGSGDGRIV LAAHRCGLRP bmy_01889T0/1-149 LRLQVPYVGA SARQVEHVLS LLRGRPGKMV DLGSGDGRIV LAAHKCGLRP BACU018843/1-226 LRLQVPYVGA SARQVEHVLS LLRGRPGKMV DLGSGDGRIV LAAHKCGLRP ENSTTRP00000003852/1-226 LRLQVPYVGA SARQVEHVLS LLRGRPGKMV DLGSGDGRIV LAAHKCGLRP 101 150 ENSP00000454380/1-235 AVGYELNPWL VALARLHAWR AGCAGSVCYR RKDLWKVSLR DCRNVSVFLA ENSBTAP00000003200/1-226 AVGYELNPWL VGLARLRAWR AGCAGSVRYH REDLWKVSLR DCHNVSVFLA bmy_01889T0/1-149 AVGYELNPWL VGLAWLHAWR AGCVGNVSYH RENLWKV--- ---------- BACU018843/1-226 AVGYELNPWL VGLAWLHAWR AGCVGNVSYR RENLWKVSLR DCHNVSVFLA ENSTTRP00000003852/1-226 AVGYELNPWL VGLAWLHAWR AGCAGNVSYR RENLWKVSLR DCHNVSVFLA 151 200 ENSP00000454380/1-235 PSVLPLLEDK LRTELPAGAR VVSGRFPLPT WQPVTAVGEG LDRVWAYDVP ENSBTAP00000003200/1-226 PSVLPLLEDK LQAELPAGAR VVSGRFPLPT WQPVAVVGEG LDRVWAYDIH bmy_01889T0/1-149 --IQGVLD-- ---------- ------PLR- ---------- ---------- BACU018843/1-226 PSVLPLLEDK LQAELPAGAR VVSGRFPLPT WQPVAVLGEG LDRVWAYDVH ENSTTRP00000003852/1-226 PSVLPLLEDK LQAELPAGAR VVSGRFPLPT WQPVAVLGEG LDRVWAYDVH 201 250 ENSP00000454380/1-235 EGGQAGEAAS SRIPIQAAPG PSSAPIPGGL ISQAS ENSBTAP00000003200/1-226 RGGPAG---- -----QAVPG PSSASVLGTP NSQNG bmy_01889T0/1-149 ---------- --------PH P--------- ----- BACU018843/1-226 SGGPAG---- -----QAVPG PSSASVPGAP NSQVG ENSTTRP00000003852/1-226 SGRPAG---- -----QAVPG PSSASVPGAP NSQVG