KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:18 2014 Check: 00 .. Name: ENSTTRP00000014940/1-365 Len: 498 Check: 2106 Weight: 1.00 Name: ENSP00000330237/1-416 Len: 498 Check: 9925 Weight: 1.00 Name: ENSBTAP00000003205/1-452 Len: 498 Check: 8889 Weight: 1.00 Name: bmy_09925T0/1-436 Len: 498 Check: 525 Weight: 1.00 Name: BACU005669/1-458 Len: 498 Check: 7838 Weight: 1.00 // 1 50 ENSTTRP00000014940/1-365 ---------- ---------- ---------- ---------- ----RAGSGS ENSP00000330237/1-416 MDEADRRLLR RCRLRLVEEL QVDQLWDALL SRELFRPHMI EDIQRAGSGS ENSBTAP00000003205/1-452 MNEADRLLLR RYRVRLVGEL QVASLWDALL SRELFTPDMI EDIQRAGSGS bmy_09925T0/1-436 MDEADRRLLR RCRVRLVGEL QVAALWDALL NRELFTPDMI EDIQRAGSGS BACU005669/1-458 ---------- ---------- ---------- --------MI EDIQRAGSGS 51 100 ENSTTRP00000014940/1-365 RRDQARQLIT DLETRGSQAL PLFISCLEDT GQETLASFLR TSRQAAK--- ENSP00000330237/1-416 RRDQARQLII DLETRGSQAL PLFISCLEDT GQDMLASFLR TNRQAAK--- ENSBTAP00000003205/1-452 RRDQARQLIL DLETRGSQAL PLFISCLEDT GQDTLASLLK TSRQAAKQDV bmy_09925T0/1-436 RRDQARQLII DLETRGSQAL PLFISCLEDT GQDTLASLLR TSRQAAKQDP BACU005669/1-458 RRDQARQLII DLETRGSQAL PLFISCLEDT GQDTLASLLR TSRQAAKQDP 101 150 ENSTTRP00000014940/1-365 ---------- ---------- ---------P SRPSQGKLAP VVLGPEELWP ENSP00000330237/1-416 ---------- ---------- ---------L SKPTLENLTP VVLRPE---- ENSBTAP00000003205/1-452 EAIRPLDLKP VVLGPEGLKP GEPRVMKQDP SKPSQGKLAP VVLGPEELWP bmy_09925T0/1-436 EAIRPLDLKP VVLGPVSLKP KELRVVKQDP SKPSQGKLAP VVLGPEELWP BACU005669/1-458 EAIRTLDLKP VVLGPVSLKP EELRVAKQDP SQPSQGKLAP VVLGPEELWP 151 200 ENSTTRP00000014940/1-365 AKLSPEVLRP EAPRPVDIGS GGFSEI---- ---------- ---------- ENSP00000330237/1-416 -IRKPEVLRP ETPRPVDIGS GGFGDV---- ---------- ---------- ENSBTAP00000003205/1-452 AKLRPEVLRP EVPRAVDAGS GGFTDV---- ---------- ---------- bmy_09925T0/1-436 AKLRPEVLRP EAPRPVDIGS GGFSEI---- ---------- ---------- BACU005669/1-458 AKLRPEVLRP EAPRPVDVGS GGFSEILKLS ESPVPLWQLG INDSPSQLQG 201 250 ENSTTRP00000014940/1-365 ---------- ---------- RAQDRAKGNA DLAYVLNADP CGHCLIINNV ENSP00000330237/1-416 ---------- ---------- GALESLRGNA DLAYILSMEP CGHCLIINNV ENSBTAP00000003205/1-452 ---------- ---------- CPQDRAKGNA DLAYVLNADP CGHCLIINNV bmy_09925T0/1-436 ---------- ---------- RAQDRAEGNA DLAYVLNADP CGHCLIINNV BACU005669/1-458 LLRGVSEAIL GKDFTRGLVS GAQDRAKGNA DLAYVLNADP CGHCLIINNV 251 300 ENSTTRP00000014940/1-365 NFCHESGLRT RTGSSIDCER MQQRFHLLHF VVEVKCNLTA K-------EL ENSP00000330237/1-416 NFCRESGLRT RTGSNIDCEK LRRRFSSLHF MVEVKGDLTA KKMVLALLEL ENSBTAP00000003205/1-452 NFCRESGLRA RTGSNIDCER MRQRFHLLQF VVEVKCDLTA KQMVQALMQL bmy_09925T0/1-436 NFCHESGLST RTGSSIDCER MQQRFHLLHF AVEVKCNLTA KQMDQALLEL BACU005669/1-458 NFCHESGLNT RTGSNIDCER MQQRFHLLHF MVEVKCNLTA KQMVQALGEL 301 350 ENSTTRP00000014940/1-365 ARRDHSALDC CVVVILSHGC QASHLQ-PGA VXXXXXXXXX XXXXXXXXXX ENSP00000330237/1-416 AQQDHGALDC CVVVILSHGC QASHLQFPGA VYGTDGCPVS VEKIVNIFNG ENSBTAP00000003205/1-452 ARQDHSALDC CVVVILSHGC QASHLQFPGA VYGTDGCPVS VERIVNTFNG bmy_09925T0/1-436 ARWDHSALDC CVVVILSHGC QASHLQFPGA VYGMDGCPVS VERIVNIFNG BACU005669/1-458 ARRDHGALDC CVVVILSHGC QASHLQFPGA VYGVDGYPVS VEKIVNIFNG 351 400 ENSTTRP00000014940/1-365 XXXXXXXXXX XXXXXXXXXX XQKDQGFEVA STSPEDRTPD SDPEPDATPF ENSP00000330237/1-416 TSCPSLGGKP KLFFIQACGG EQKDHGFEVA STSPEDESPG SNPEPDATPF ENSBTAP00000003205/1-452 TGCPSLRGKP KLFFIQACGG EQKDHGFEVE STSPEDKTPS SDPEADATPF bmy_09925T0/1-436 TGCPSLGGKP KLFFIQACGG EQKDQGFEVA STSPEDRTPD SDPEPDATPF BACU005669/1-458 TGCPSLGGKP KLFFIQACGG EQKDQGFEVA STSPEDRTPD SDPEPDATPF 401 450 ENSTTRP00000014940/1-365 QEGPVTVDQP DAVSSLPTPS DILVSYSTFP GFVSWRDTKS GSWYIETLDS ENSP00000330237/1-416 QEGLRTFDQL DAISSLPTPS DIFVSYSTFP GFVSWRDPKS GSWYVETLDD ENSBTAP00000003205/1-452 QEGPRSIDEP DAVSSLPTPS DILVSYSTFP GFVSWRDPKS GSWYIETLDS bmy_09925T0/1-436 QEGPVTVDQP DAVSS----- ---------- -FVSWRDTKS GSWYIETLDS BACU005669/1-458 QEGPVTFDQP DAVSSLPTPS DILVSYSTFP GFVSWRDTKS GSWYIETLDS 451 500 ENSTTRP00000014940/1-365 IFEQWAHCED LQTLLLRVRL VRASVSS--- --PGQVVGLS RAPSPSQR ENSP00000330237/1-416 IFEQWAHSED LQSLLLRVAN A-VSVKGIYK QMPGCFNFLR KKLFFKTS ENSBTAP00000003205/1-452 IFEQWAHCED LQTLLLRVAN A-VSVKGIYK QMPGCFNFLR KKLFFKT- bmy_09925T0/1-436 VFEQWAHCED LQTLLLRVAN A-VSVKGIYK QIPGCFNFLR KKLFFKX- BACU005669/1-458 IFEQWAHCED LQTLLLRVAN A-VSVKGIYK QIPGCFNFLR KKLFFKT-