KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:18 2014 Check: 00 .. Name: ENSP00000293889/1-438 Len: 545 Check: 7053 Weight: 1.00 Name: bmy_01890T0/1-334 Len: 545 Check: 9601 Weight: 1.00 Name: ENSBTAP00000003211/1-427 Len: 545 Check: 7829 Weight: 1.00 Name: BACU009246/1-300 Len: 545 Check: 672 Weight: 1.00 Name: ENSTTRP00000003854/1-427 Len: 545 Check: 5213 Weight: 1.00 // 1 50 ENSP00000293889/1-438 MEHAATTGPR PGPPSRRVEN VVLRAKDWLP GAPGGTAVWA TSLEAEVPPD bmy_01890T0/1-334 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003211/1-427 MEHGAAPVP- ---PPRATEN VLPRAEAWLP GVPGGAPAWA TNLGTELPSD BACU009246/1-300 MEYVAAPGPK SGAPPRATKN V--------- ---------- ---------- ENSTTRP00000003854/1-427 MEYVAAPGSR PGAPPRATKN VLPRAETWLP GVPGGTPTWA TNLETEVPSD 51 100 ENSP00000293889/1-438 LALNKEQQLQ ISKELVDIQI TTHHLHEQHE AEIFQLKSEI LRLESRVLEL bmy_01890T0/1-334 ---------- ---------- --------MD DDL--VTPQV LWLESRVLEL ENSBTAP00000003211/1-427 LELSEEQRLQ VCKELVDLQI KNQRLQEQHD AEIFELKSEV LWLESRMLEL BACU009246/1-300 ---------- -CKELVDLQI KTHRLKEQHE AEIFELKSE- ---------- ENSTTRP00000003854/1-427 LELSEEQRLQ VCKELVDLQI KTHRLKEQHE AEIFELKSEV LWLESRVLEL 101 150 ENSP00000293889/1-438 ELRGDGTSQG CAVPVESDPR HPRAAAQELR HKAQVPGHSD DHRF------ bmy_01890T0/1-334 ELHGEQ---- -AAPAEADPG HRQALAQELG HKAWGQGHSD LHRLQVTMSA ENSBTAP00000003211/1-427 ELQGVQ---- -AAPAEADPR HHLALAQELG HKPGGQGHSY RHRL------ BACU009246/1-300 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003854/1-427 ELHG-Q---- -AALAEANPG HRQALAQELG HKAWGQGHSD HHRL------ 151 200 ENSP00000293889/1-438 ---------- ---------- QVQPKNTMNP ENEQHRLGSG L--------- bmy_01890T0/1-334 WVEAKRVQQG NSEAETGSSV QAQPKDFLTP ENEQQKLGDG VTAGRSKSGA ENSBTAP00000003211/1-427 ---------- ---------- QAQSADFLTP ENKQQELGDG L--------- BACU009246/1-300 ---------- ---------- ---------- ---------- P--------- ENSTTRP00000003854/1-427 ---------- ---------- QAQPKDFLTA ENEQQKLGHG P--------- 201 250 ENSP00000293889/1-438 ---------- ---------- ------QGEV KWALEHQEAR QQA------- bmy_01890T0/1-334 RAAQGSAAGT GDACVSDCLT WDRRAQQGTV SKGAVLKGQK ESPALGPAKP ENSBTAP00000003211/1-427 ---------- ---------- ------PAEA KRVQEQHGAQ QKA------- BACU009246/1-300 ---------- ---------- ------QGEV NRAPEQHRAR QQA------- ENSTTRP00000003854/1-427 ---------- ---------- ------QGEV SRAPEQHRAR QQA------- 251 300 ENSP00000293889/1-438 -LVTRVATLG RQLQGAREEA RAAGQRLATQ AVVLCSCQGQ LRQAEAENAR bmy_01890T0/1-334 HTHVCRAALG WQLQGAQEEA KTAGQQLAAQ ALVLSACRGQ LHQAEAENAR ENSBTAP00000003211/1-427 -LETCVAALG QQLQGAWEEA RTAGQRLAAQ AVVLSSCRGQ LHQAEAENAQ BACU009246/1-300 -LETRVAALG WQLQGAQEEA KTAGQQLAAQ ALLLSACRGQ LHQAEAENAQ ENSTTRP00000003854/1-427 -LETRVAALG WQLQGAQEEA RTAGQQLAAQ TLVLSACRGQ LHQAEAENAR 301 350 ENSP00000293889/1-438 LQLQLKKLKD EYVLRLQHCA WQAV-----E HADGAGQAPA TTALRTFLEA bmy_01890T0/1-334 LQLQLKKLNE EYAIRLQHCA RAVA-----V STGPVGP--- ---------- ENSBTAP00000003211/1-427 LQLQLKKLNE AYAIRLQHCA QTVA-----G YADGAGPKPT AAALRTFLET BACU009246/1-300 LQLQLKKLNE EYAIRLQHCA RAVAVSTGPG YADGAGPKPA STALRTFLET ENSTTRP00000003854/1-427 LQLQLKKLNE EYAIRLQHCA RAVA-----E YADGAGPKPA STALRTFLET 351 400 ENSP00000293889/1-438 TLEDIRAAHR SREQQLARAA RSYHKRLVDL SRRHEELLVA YRAPGNPQAI bmy_01890T0/1-334 -------VLS GRPLVLGSPS LAWKE----- ---------- ---------- ENSBTAP00000003211/1-427 TLEDIRTAHH SREQQLARAA RFYRKCLADL SRRHEELLTA HRAQGTPRAA BACU009246/1-300 TLEDIQGAHH SREQQLARAA RTYRKRLADL SRRHEELLAA QR-------- ENSTTRP00000003854/1-427 TLEDIRGAHH SREQQLARAA RTYRKRLADL SQRHEELLAA HRAPRIPKAT 401 450 ENSP00000293889/1-438 FDIASLDLEP LPVPLVTDFS HREDQHGGPG ALLSSPKKRP GGASQGGTSE bmy_01890T0/1-334 ---------- ---------- ---------- ---------P SEASQGGPLE ENSBTAP00000003211/1-427 FGAAPSDVAL LPLSTVTESS HQTEDQ---H PLLLFPQKGS SEVSQGGTVE BACU009246/1-300 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003854/1-427 SGAATSDMEP PPLHMVTKFG HLREDQ---- SLFLFLQKEP NEASQGGPLE 451 500 ENSP00000293889/1-438 PQGLDAASWA QIHQKLRDFS RSTQSWNGSG HSCWSGPRWL ---------- bmy_01890T0/1-334 PQGLEAASWA QIRQKLQDFS RGTQAELERE RAQ-LLVRAM MAEEQLSELQ ENSBTAP00000003211/1-427 PQGLEAASWA QIRQNLQEFA RGTQSWSGSG HSCWSAPRWQ ---------- BACU009246/1-300 --GLEAASWA QIRQKLQDFS RGTQAELERE RAQ-LLVRAM IAEEQLSELQ ENSTTRP00000003854/1-427 PQGLEAASWA QIRQKLQDFS RGTQSWKGRE HSC-SEPRWL ---------- 501 550 ENSP00000293889/1-438 ---------- KSNFLSYRST WTS--TW-AG TSTKS----- ----- bmy_01890T0/1-334 EYVDQHLGR- ---------- ---------- ---------- ----- ENSBTAP00000003211/1-427 ---------- RSSFLSYRST WTS--TWEAG TSRRS----- ----- BACU009246/1-300 EYVDQHLGRY KQEILRLRKL VGTGNPWKAG ATPPAKLQHP RTCSR ENSTTRP00000003854/1-427 ---------- RSNFLSYKSM WTS--TW-AG TSRRS----- -----