KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:19 2014 Check: 00 .. Name: ENSP00000242257/1-246 Len: 306 Check: 105 Weight: 1.00 Name: bmy_17112T0/1-163 Len: 306 Check: 5243 Weight: 1.00 Name: ENSBTAP00000003214/1-244 Len: 306 Check: 8012 Weight: 1.00 Name: BACU019743/1-240 Len: 306 Check: 8927 Weight: 1.00 Name: ENSTTRP00000010132/1-246 Len: 306 Check: 8791 Weight: 1.00 // 1 50 ENSP00000242257/1-246 ---------- ---------- ---------- ---------- ---------- bmy_17112T0/1-163 SPAAPAHRAL PGRSQARLPW RPSRTHPLPD SRAPGLRTRL SHPRAASGGV ENSBTAP00000003214/1-244 ---------- ---------- ---------- ---------- ---------- BACU019743/1-240 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010132/1-246 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000242257/1-246 ---MAGYLKL VCVSF----- --QRQGFHTV GSRCKNRTGA EHLWLTRHLR bmy_17112T0/1-163 ASGRKRGRHF RWRQLEQVGV HGQRQRFHTG GSCFRGRPGA EHLWLMRHLR ENSBTAP00000003214/1-244 ---MAGSLKL VWASL----- --QRQRFHTT GSCYKSRTGA EHLWLTRHLR BACU019743/1-240 -----RSLKL VWASF----- --PRQRFHTG GSCLKGRTGA EHLWLVRHLR ENSTTRP00000010132/1-246 ---SIRSSKL VWASF----- --QRQKFHTS GSCFKGRTGA EHLWLMRHLR 101 150 ENSP00000242257/1-246 DPFVKAAKVE SYRCRSAFKL LEVNERHQIL RPGLRVLDCG AAPGAWSQVA bmy_17112T0/1-163 DPFVKAAKVE SYRCRSAFKL LEVNERHRIL RPGLRVLDCG AAPGAWSQVA ENSBTAP00000003214/1-244 DPFVKAAKVE SYRCRSAFKL LEMNERHQIL RPGLRVLDCG AAPGAWSQVA BACU019743/1-240 DPFVKAAKVE SCRCRSAFKL LEVNERYRIL RPGLRVLDCG AAPGAWSQVA ENSTTRP00000010132/1-246 DPFVKAAKVE SYRCRSAFKL LEVNERHRIL RPGLRVLDCG AAPGAWSQVA 151 200 ENSP00000242257/1-246 VQKVNAAGTD PSSPVGFVLG VDLLHIFPLE GATFLCPADV TDPRTSQRIL bmy_17112T0/1-163 VQSVNAAGT- ---------- ---------- ---------- ---------- ENSBTAP00000003214/1-244 VQRVNAAGTD PSAPVGFVLG VDLLHIFPLE GATFLCPADV TDPRTFRKIQ BACU019743/1-240 VQSVNAAGTD PRAPVGFVLG VDLLHILPLE GATFLCPADV TDPRTFQRIR ENSTTRP00000010132/1-246 VQSVNAAGTD PSAPVGSVLG VDLLHVSPLE GATFLCPADV TDPRTLQRIR 201 250 ENSP00000242257/1-246 EVLPGRRADV ILSDMAPNAT GFRDLDHDRL ISLCLTLLSV TPDILQPGGT bmy_17112T0/1-163 ----GG---- -----AP--- ---------- ---------- ---------- ENSBTAP00000003214/1-244 ELLPGGRADV ILSDMAPNAT GIRSLDHDRL ISLCLSLLDM VPDVLHPRGT BACU019743/1-240 ELLPAGRADV ILSDMAPNAT GIRGLDHDRL ISLCLSLLDM APEVLHRGGT ENSTTRP00000010132/1-246 ELLPAGRADV ILSDMAPNAT GIRGLDHDRL ISLCLSLLDM APEVLHPGGT 251 300 ENSP00000242257/1-246 FLCKTWAGSQ SRRLQRRLTE EFQNVRIIKP EASRKESSEV YFLATQYHGR bmy_17112T0/1-163 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003214/1-244 FLCKTWAGSQ SQRLQKRLTQ EFQNTRTVKP EASRKESSEV YLLATQYRGK BACU019743/1-240 FLCKTWAGSQ SHRLQRRLTE EFQKTRTVKP EASRKESSEV YLLATQYRRG ENSTTRP00000010132/1-246 LLCKTWAGSQ SHRLQKRLTE EFQKTRTVKP EASRKESSEV YLLATQYRRG 301 350 ENSP00000242257/1-246 KGTVKQ bmy_17112T0/1-163 ------ ENSBTAP00000003214/1-244 PGGL-- BACU019743/1-240 KG---- ENSTTRP00000010132/1-246 KGAVKE