KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:19 2014 Check: 00 .. Name: BACU001151/1-617 Len: 812 Check: 9210 Weight: 1.00 Name: ENSTTRP00000003549/1-732 Len: 812 Check: 3590 Weight: 1.00 Name: bmy_21559T0/1-787 Len: 812 Check: 7088 Weight: 1.00 Name: ENSP00000367727/1-773 Len: 812 Check: 8356 Weight: 1.00 Name: ENSBTAP00000003219/1-773 Len: 812 Check: 9744 Weight: 1.00 // 1 50 BACU001151/1-617 MAECGASGSG SSGDSLDKSI TLPPDEIFRN LENAKRFAID IGGSLTKLAY ENSTTRP00000003549/1-732 ---------- ---------- ---------- ---------- --GSLTKLAY bmy_21559T0/1-787 MAECGASGSG SSGDSLDKSI TLPPDEIFRN LENAKRFAID IGGSLTKLAY ENSP00000367727/1-773 MAECGASGSG SSGDSLDKSI TLPPDEIFRN LENAKRFAID IGGSLTKLAY ENSBTAP00000003219/1-773 MAECGASGSG SSGDSLDKSI TLPPDEIFRN LENAKRFAID IGGSLTKLAY 51 100 BACU001151/1-617 YSTVQHKVAK VRSFDHSDKD TEQDHEPPYE ISVQEEVTAR LHFVKFENTY ENSTTRP00000003549/1-732 YSTVQHKVAR VRSFDHSDKD TEQDHEPPYE ISVQEEVTAR LHFVKFENTY bmy_21559T0/1-787 YSTVQHKVAR VRSFDHSDKD TEQDHEPPYE ISVQEEVTAR LHFVKFENTY ENSP00000367727/1-773 YSTVQHKVAK VRSFDHSGKD TEREHEPPYE ISVQEEITAR LHFIKFENTY ENSBTAP00000003219/1-773 YSTVQHKVAK VRSFDYSGKD TEQDHEPPYE ISVQEEVTAR LHFVKFENTY 101 150 BACU001151/1-617 IEACLDFIKD HLVNTETKVI QATGGGAYKF KDLIEEKLQL KVDKEDVMTC ENSTTRP00000003549/1-732 IEACLDFIKD HLVNTETKVI QATGGGAYKF KDLIEEKLQL KVDKEDVMTC bmy_21559T0/1-787 IEACLDFIKD HLVNTETKVI QATGGGAYKF KDLIEEKLQL KVDKEDVMTC ENSP00000367727/1-773 IEACLDFIKD HLVNTETKVI QATGGGAYKF KDLIEEKLRL KVDKEDVMTC ENSBTAP00000003219/1-773 IEACLDFIKD HLVNTETKVI QATGGGAYKF KDLIEEKLQL KVDKEDVMTC 151 200 BACU001151/1-617 LIKGCNFVLK NIPQEAFVYQ KGSNPEFRFQ THQPS-VFPY LLVSVGSGVS ENSTTRP00000003549/1-732 LIKGCNFVLK NIPHEAFMYQ KGSNPEFRFQ TNHPSDIFPY LLVSIGSGVS bmy_21559T0/1-787 LIKGCNFVLK NIPQEAFVYQ KGSNPEFRFQ TNHPS-VFPY LLVSIGSG-- ENSP00000367727/1-773 LIKGCNFVLK NIPHEAFVYQ KDSDPEFRFQ TNHPH-IFPY LLVNIGSGVS ENSBTAP00000003219/1-773 LIKGCNFVLK NIPHEAFVYQ KDSDPEFRFQ TNHPN-IFPY LLVNIGSGVS 201 250 BACU001151/1-617 IVKVETEDRF EWIGGSSIGG GTFWGLGALL TKTKSFDELL HLASRGQHAN ENSTTRP00000003549/1-732 IXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXTKKFDELL HLASRGQHTN bmy_21559T0/1-787 ---VETEDRF EWIGGSSIGG GTFWGLGALL TKTKNFDELL HLASRGQHTN ENSP00000367727/1-773 IVKVETEDRF EWVGGSSIGG GTFWGLGALL TKTKKFDELL HLASRGQHSN ENSBTAP00000003219/1-773 IVKVETEDRF EWIGGSSIGG GTFWGLGALL TKTKKFDELL QLASRGQHTN 251 300 BACU001151/1-617 VDMLVQDIYG GAHQTLGLSG NLIASSFGKS ATADTEFSKE DMAKSLLHMI ENSTTRP00000003549/1-732 VDMLVQDIYG GAHQTLGLSG NLIASSFGKS ATADTEFSKE DMAKSLLHMI bmy_21559T0/1-787 VDMLVQDIYG GAHQTLGLSG NLIASSFGKS ATADTEFSKE DMAKSLLHMI ENSP00000367727/1-773 VDMLVRDVYG GAHQTLGLSG NLIASSFGKS ATADQEFSKE DMAKSLLHMI ENSBTAP00000003219/1-773 VDMLVQDIYG GAHETLGLSG NLIASSFGKS ATADQEFSKE DMAKSLLHMI 301 350 BACU001151/1-617 SNDIGQLACL YAKLHCLDRV YFGGFFIRGH PVTMRTITYS INFFSKGEVQ ENSTTRP00000003549/1-732 SNDIGQLACL YARLHCLDRV YFGGFFIRGH PVTMRTITYS INFFSKGEVQ bmy_21559T0/1-787 SNDIGQLACL YAKLHCLDRV YFGGFFIRGH PVTMRTITYS INFFSKGEVQ ENSP00000367727/1-773 SNDIGQLACL HARLHSLDRV YFGGFFIRGH PVTMRTITYS INFFSKGEVQ ENSBTAP00000003219/1-773 SNDIGQLACL YARLHCLDRV YFGGFFIRGH PVTMRTITYS INFFSKGEVQ 351 400 BACU001151/1-617 ALFLRHEGYL GAIGAFLKGA EQD------- ---------- -------NPN ENSTTRP00000003549/1-732 ALFLRHEGYL GAIGAFLKGA EQD------- ---------- -------NPN bmy_21559T0/1-787 ALFLRHEGYL GAIGAFLKGA EQDSEYSVAV GRGLCWAAAS GGGGPLGNPN ENSP00000367727/1-773 ALFLRHEGYL GAIGAFLKGA EQD------- ---------- -------NPN ENSBTAP00000003219/1-773 ALFLRHEGYL GAIGAFLKGA EQD------- ---------- -------NPN 401 450 BACU001151/1-617 QYSWEENYAG SSGLMSSSPE LCPTQRARSR T--------- ---------- ENSTTRP00000003549/1-732 QYSWEENYAG SSGLMSSSPE LCPTQRPRSG TFDLLEMDRL ERPLVNLPLL bmy_21559T0/1-787 QYSWEENYAG SSGLMSSSPE LCPTQRARSG TFDLLEMDRL ERPLVNLPLL ENSP00000367727/1-773 QYSWGENYAG SSGLMSASPE LGPAQRARSG TFDLLEMDRL ERPLVDLPLL ENSBTAP00000003219/1-773 QYSWGENYAG SSGLMSSSPE LCPTQRARSG TFDLLEMDRL ERPLVNLPLL 451 500 BACU001151/1-617 VSTGSVAPGP ACAASAGAS- --WRS----- ---PRRAPVL PWPGSKVPPP ENSTTRP00000003549/1-732 LDPSSYVPDT VDLTDDALAR KYWLTCFEEA LDGVVKRAVA SQPGSVDAAE bmy_21559T0/1-787 LDPSSYVPDT VDLTDDALAR KYWLTCFEEA LDGVVKRAVA SQPGSVDAAE ENSP00000367727/1-773 LDPPSYVPDT VDLTDDALAR KYWLTCFEEA LDGVVKRAVA SQPDSVDAAE ENSBTAP00000003219/1-773 LDPSSYVPDT VDLTDDALAR KYWLTCFEEA LDGVVKRAVA SQPGSVDAAE 501 550 BACU001151/1-617 GAGRSRTADW GRRETFA--- -ACSRLSSSS RSVARSSGVQ ----PEP--- ENSTTRP00000003549/1-732 RAEKFRQKYW NKLQTLRQQP FAYGTLTVRS LLDTREHCLN EFNFPDPYSK bmy_21559T0/1-787 RAEKFRQKYW DKLQTLRHQP FAYGTLTVRS LLDTREHCLN EFNFPDPYSK ENSP00000367727/1-773 RAEKFRQKYW NKLQTLRQQP FAYGTLTVRS LLDTREHCLN EFNFPDPYSK ENSBTAP00000003219/1-773 RAEKFRQKYW NKLQTLRHQP FAYGTLTVRS LLDTREHCLN EFNFPDPYSK 551 600 BACU001151/1-617 -------SAP RSPRRVCR-- -----ENRKF REHRGSFLG- ---------- ENSTTRP00000003549/1-732 VKQKDNGVAL KCFQRVIHSL DALGWEERQL ALVKGLLAGN VFDWGAKAVS bmy_21559T0/1-787 VKQKDNGVAL KCFQRVIHSL DALGWEERQL ALVKGLLAGN VFDWGAKAVS ENSP00000367727/1-773 VKQRENGVAL RCFPGVVRSL DALGWEERQL ALVKGLLAGN VFDWGAKAVS ENSBTAP00000003219/1-773 VKQKDNGVAL KCFQRVVSAL DALDWEERQL ALVKGLLAGN VFDWGAKAVS 601 650 BACU001151/1-617 -LWDRSQQNR VKTVGRGHQP GPLLLDHV-- -LCVMVSRRY RACRVCEFPQ ENSTTRP00000003549/1-732 DVLESDPQFG FEEAKRKLQE RPWLVDSYSK WLQRLKGPPH KCALIFADNS bmy_21559T0/1-787 DVLESDPQFG FEEAKRKLQE RPWLVDSYSK WLQRLKGPPH KCALIFADNS ENSP00000367727/1-773 AVLESDPYFG FEEAKRKLQE RPWLVDSYSE WLQRLKGPPH KCALIFADNS ENSBTAP00000003219/1-773 DVLESDPQFG FEEAKKKLQE RPWLVDSYSK WLQRLKGPPH KCALIFADNS 651 700 BACU001151/1-617 EIP------P FPQSPLG--- ---------- ---------- --VRPTMSGW ENSTTRP00000003549/1-732 GVDVILGVFP FVRELLSRGT EVILACNSGP ALNDVTYSES LIVAERIAAM bmy_21559T0/1-787 GVDVILGVFP FVRELLSRGT EV-------- ---------- -SVEGRMAGP ENSP00000367727/1-773 GIDIILGVFP FVRELLLRGT EVILACNSGP ALNDVTHSES LIVAERIAGM ENSBTAP00000003219/1-773 GVDVILGVFP FVRELLSRGT EVILACNSGP ALNDVTYSES LIVAERIAAM 701 750 BACU001151/1-617 GLPWPAEW-W GEG----VPA GTGWYCRGP- ---------- ---------- ENSTTRP00000003549/1-732 DP--VVRSAL GEGRLLLMQT GSSSPCLDL- ---------- -SRLDKGLAV bmy_21559T0/1-787 LPSSCARWGW RRPGPLHVQV GAGAGCQAPR LHPPHCPLPP RSRLDKGLAV ENSP00000367727/1-773 DP--VVHSAL QEERLLLVQT GSSSPCLDL- ---------- -SRLDKGLAA ENSBTAP00000003219/1-773 DP--VIHSAL REERLLLVQT GSSSPCLDL- ---------- -SRLDKGLAV 751 800 BACU001151/1-617 ---------- ---------- ---------- ---------- VLAQIIAGRA ENSTTRP00000003549/1-732 LVRERGADLV VIEGMGRAVH TNYHAALRCE SLKLAVIKNS WLAERLGGRL bmy_21559T0/1-787 LVRERGADLV VIEGMGRAVH TNYHAALRCE SLKLAVIKNS WLAERLGGRL ENSP00000367727/1-773 LVRERGADLV VIEGMGRAVH TNYHAALRCE SLKLAVIKNA WLAERLGGRL ENSBTAP00000003219/1-773 LVRERGADLV VIEGMGRAVH TNYHAALCCE SLKLAVIKNS WLAERLGGQL 801 850 BACU001151/1-617 VAGLLTSRP- -- ENSTTRP00000003549/1-732 FSVIFKYEVP AE bmy_21559T0/1-787 FSVIFKYEVP AE ENSP00000367727/1-773 FSVIFKYEVP AE ENSBTAP00000003219/1-773 FSVIFKYEVP AE