KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:24 2014 Check: 00 .. Name: BACU004844/1-1056 Len: 1274 Check: 459 Weight: 1.00 Name: ENSTTRP00000000658/1-962 Len: 1274 Check: 1906 Weight: 1.00 Name: ENSBTAP00000003252/1-969 Len: 1274 Check: 884 Weight: 1.00 Name: bmy_13476T0/1-889 Len: 1274 Check: 7406 Weight: 1.00 Name: ENSP00000258886/1-963 Len: 1274 Check: 8260 Weight: 1.00 // 1 50 BACU004844/1-1056 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000658/1-962 MDAPSAGYAF EYLIETLNDS SHKKFFNVPR LGGTKY--DV LPYSIRVLLE ENSBTAP00000003252/1-969 MDAPSAGYAF EYLIETLNDS SHKKFFNVPR LGGTKYESDV LPYSIRVLLE bmy_13476T0/1-889 -------MII PLLIVIFSLE S--------- --------DV LPYSIRVLLE ENSP00000258886/1-963 MDAPKAGYAF EYLIETLNDS SHKKFFDVSK LG-TKY--DV LPYSIRVLLE 51 100 BACU004844/1-1056 ---------- MKREDVMNIL DWKTKQSNVE VPFFPARVLL QDFT------ ENSTTRP00000000658/1-962 AAVRNCDGFL MKREDVMNIL DWKTKQSNVE VPFFPARVLL QD--GIPAMV ENSBTAP00000003252/1-969 AAVRNCDGFL MKKEDVMNIL DWKTKQSNVE VPFFPARVLL QDFTGIPAMV bmy_13476T0/1-889 AAVRNCDGFL MKREDVMNIL DWKTKQSNVE VPFFPARVLL QDFTGIPAMV ENSP00000258886/1-963 AAVRNCDGFL MKKEDVMNIL DWKTKQSNVE VPFFPARVLL QDFTGIPAMV 101 150 BACU004844/1-1056 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000658/1-962 DFAAMREAVK TLGGDPKKVH PACPTDLTVD HSLQIDFNK- --CAIQNAPN ENSBTAP00000003252/1-969 DFAAMREAVK TLGGDPKKVH PACPTDLTVD HSLQIDFNKW NDSAIQNAPN bmy_13476T0/1-889 DFAAMREAVK TLGGDPKKVH PACPTDLTVD HSLQIDFNK- --CAIQNAPN ENSP00000258886/1-963 DFAAMREAVK TLGGDPEKVH PACPTDLTVD HSLQIDFSK- --CAIQNAPN 151 200 BACU004844/1-1056 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000658/1-962 PGGGDLQKAG KLSPLRVQPK KLPCRGQTTC RGSCDSGELG RNSGRFSSQI ENSBTAP00000003252/1-969 PGGGDLQKAG KLSPLRVQPK KLPCRGQTTC RGSCDSGELG RNSGKFSSQI bmy_13476T0/1-889 PGGGDLQKAG KLSPLRVQPK KLPCRGQTTC RGSCDSGEPG RNSGRFSSQI ENSP00000258886/1-963 PGGGDLQKAG KLSPVKVQPK KLPCRGQTTC RGSCDSGELG RNSGTFSSQI 201 250 BACU004844/1-1056 ---------- ------PETV LKNQEVEFGR NRERLQFFKW SSRVFKNVAV ENSTTRP00000000658/1-962 ENTPILCPFH LQPVPXXXXX XXXXXXXXXX XXXXXXXXXW SSRVFKNVAV ENSBTAP00000003252/1-969 ENTPILCPFH LQPVPEPETV LKNQEVEFGR NRERLQFFKW SSRVFKNVAV bmy_13476T0/1-889 ENTPILCPFH LQPVPEPETV LKNQEVEFGR NRERLQFFKW SSRVFKNVAV ENSP00000258886/1-963 ENTPILCPFH LQPVPEPETV LKNQEVEFGR NRERLQFFKW SSRVFKNVAV 251 300 BACU004844/1-1056 IPPGTGMAHQ VNLEYLSRVV FEEKDLLFPD SVVGTDSHIT MVNGLGILGW ENSTTRP00000000658/1-962 IPPGTGMAHQ VNLEYLSRVV FEEKDLLFPD SVIGTDSHIT MVNGLGILGW ENSBTAP00000003252/1-969 IPPGTGMAHQ VNLEYLSRVV FEEKDLLFPD SVVGTDSHIT MVNGLGILGW bmy_13476T0/1-889 IPPGTGMAHQ VNLEYLSRVV FEEKDLLFPD SVVGTDSHIT MVNGLGILGW ENSP00000258886/1-963 IPPGTGMAHQ INLEYLSRVV FEEKDLLFPD SVVGTDSHIT MVNGLGILGW 301 350 BACU004844/1-1056 -GVGGIETEA VMLGLPASLT LPEVVGCELT GSSNPFVTSI DVVLGITKHL ENSTTRP00000000658/1-962 -GVGGIETEA VMLGLPASLT LPEVVGCELT GSSNPFVTSI DVVLGITKHL ENSBTAP00000003252/1-969 VGVGGIETEA VMLGLPVSLT LPEVVGCELT GSSNPFVTSI DVVLGITKHL bmy_13476T0/1-889 -GVGGIETEA VMLGLPASLT LPEVVGCELT GSSNPFVTSI DVVLGITKHL ENSP00000258886/1-963 -GVGGIETEA VMLGLPVSLT LPEVVGCELT GSSNPFVTSI DVVLGITKHL 351 400 BACU004844/1-1056 RQVGVAGKFV EFFGSGVSQL SIVDRTTIAN MCPEYGAILS FFPVDNVTLK ENSTTRP00000000658/1-962 RQVGVAGKFV EFFGSGVSQL SIVDRTTIAN MCPEYGAILS FFPVDNVTLK ENSBTAP00000003252/1-969 RQVGVAGKFV EFFGSGVSQL SIVDRTTIAN MCPEYGAILS FFPVDNVTLK bmy_13476T0/1-889 RQVGVAGKFV EFFGSGVSQL SIVDRTTIAN MCPEYGAILS FFPVDNVTLK ENSP00000258886/1-963 RQVGVAGKFV EFFGSGVSQL SIVDRTTIAN MCPEYGAILS FFPVDNVTLK 401 450 BACU004844/1-1056 HLEHTGFDKA KLKSMETYLK AVKLFRNDQD NSGEPEYSQV IQINLNSIVP ENSTTRP00000000658/1-962 HLEHTGFDKA KLKSMETYLK AVKLFRNDQD NSREPEYPXX XXXXXXXXXX ENSBTAP00000003252/1-969 HLEHTGFDKA KLESMEAYLK AVKLFRNEQD NLGEPEYSQE IRASVKTVLP bmy_13476T0/1-889 HLEHTGFDKA KLKSMETYLK AV-------- ---------- IQINLNSIVP ENSP00000258886/1-963 HLEHTGFSKA KLESMETYLK AVKLFRNDQN SSGEPEYSQV IQINLNSIVP 451 500 BACU004844/1-1056 SVSGPKRPQD RVALTDMKSD FQACLNEKVG FKGFQIAAEK QNDIVSIHYE ENSTTRP00000000658/1-962 XXXXXXXXXX RVALTDMKSD FQACLYEKVG FKGFQIAAEK QNDIVSIHYE ENSBTAP00000003252/1-969 -LSGEKHLRN KIFYCNFFIF FLFFLVENVG FKGFQIAAEK QNDIVSIHYE bmy_13476T0/1-889 SVSGPKRPQD RVALTDMKSD FQACLNEKVG FKGFQIAAEK QNDIVSIHYE ENSP00000258886/1-963 SVSGPKRPQD RVAVTDMKSD FQACLNEKVG FKGFQIAAEK QKDIVSIHYE 501 550 BACU004844/1-1056 GSEYKLSHGS VVIAAVISCT NNCNPSVMLA AGLLAKKAVE AGLHVKPYIR ENSTTRP00000000658/1-962 GSEYKLSHGS VVIAAVISCT NNCNPSVMLA AGLLAKKAVE AGLHVKPYIR ENSBTAP00000003252/1-969 GSDYKLAHGS VVIAAVISCT NNCNPSVMLA AGLLAKKAVE AGLQVKPYIR bmy_13476T0/1-889 GSEYKLSHGS VVIAAVISCT NNCNPSVMLA AGLLAKKAVE AGLHVKPYIR ENSP00000258886/1-963 GSEYKLSHGS VVIAAVISCT NNCNPSVMLA AGLLAKKAVE AGLRVKPYIR 551 600 BACU004844/1-1056 TSLSPGSGMV THYLSSSGVL PYLSKLGFEI VGYGCSTCVG NTAPLSEAVL ENSTTRP00000000658/1-962 TSLSPGSGMV THYLSSSGVL PYLSKLGXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003252/1-969 TSLSPGSGMV THYLSSSGVL PYLSKLGFEI IGYGCSTCVG NTAPLSEAVL bmy_13476T0/1-889 TSLSPGSGMV THYLSSSGVL PYLSKLGFEI VGYGCSTCVG NTAPLSEAVL ENSP00000258886/1-963 TSLSPGSGMV THYLSSSGVL PYLSKLGFEI VGYGCSICVG NTAPLSDAVL 601 650 BACU004844/1-1056 NAVKQGDLVT CGVLSGNKNF EGRLCDCVRA NYLASPPLVV AYAIAGTVNI ENSTTRP00000000658/1-962 XXXXXGDLVT CGVLSGNKNF EGRLCDCVRA NYLASPPLVV AYAIAGTVNI ENSBTAP00000003252/1-969 NAVKQGDLVT CGVLSGNKNF EGRLCDCVRA NYLASPPLVV AYAIAGTVNI bmy_13476T0/1-889 NAVKQGDLVT CGVLSGNKNF EGRLCDCVRA NYLASPPLVV AYAIAGTVNI ENSP00000258886/1-963 NAVKQGDLVT CGILSGNKNF EGRLCDCVRA NYLASPPLVV AYAIAGTVNI 651 700 BACU004844/1-1056 DFQTEPLGTD PTGRNIYLHD IWPSREEVHQ IEEEHVVLSM FKALKEKTE- ENSTTRP00000000658/1-962 DFQMEPLGTD PTGRNIYLHD IWPSREEVHQ IEEEHVVLSM FKALKEKTEX ENSBTAP00000003252/1-969 DFQTEPLGTD PTGKNIYLHD IWPSREEVHQ IEEEHVVLSM FKALKEKIEM bmy_13476T0/1-889 DFQTEPLGTD PTGRNIYLHD IWPSREEVHQ IEEEHVVLSM FKALKEKTE- ENSP00000258886/1-963 DFQTEPLGTD PTGKNIYLHD IWPSREEVHR VEEEHVILSM FKALKDKIEM 701 750 BACU004844/1-1056 ---------- ---------- ---------- ----TKEPVA LQPIENAHVL ENSTTRP00000000658/1-962 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXTKEPVA LQPIENAHVL ENSBTAP00000003252/1-969 GNKRWNSLEA PDSVLFPWDL KSTYIRCPSF FDKLTKEPVA LQPIENAHVL bmy_13476T0/1-889 ---------- ---------- ---------- ----TKEPVA LQPIENAHVL ENSP00000258886/1-963 GNKRWNSLEA PDSVLFPWDL KSTYIRCPSF FDKLTKEPIA LQAIENAHVL 751 800 BACU004844/1-1056 LYLGDSVTTD HISPAGSIAR SSPAAKYLTN RGLTPREFNS YGARRGNDAV ENSTTRP00000000658/1-962 LYLGDSVTTD HISPAGSIAR SSPAAKYLTN RGLTPREFNS YGARRGNDAV ENSBTAP00000003252/1-969 LYLGDSITTD HISPAGSIAR SSAAAKYLTN RGLTPREFNS YGARRGNDAV bmy_13476T0/1-889 LYLGDSVTTD HISPAGSIAR SSPAAKYLTN RGLTPREFNS YGARRGNDAV ENSP00000258886/1-963 LYLGDSVTTD HISPAGSIAR NSAAAKYLTN RGLTPREFNS YGARRGNDAV 801 850 BACU004844/1-1056 MTRGTFANIK LFNKFIGKPA PKTVHFPSGQ TLDVFEAAEL YQKEDSGSEI ENSTTRP00000000658/1-962 MTRGTFANIK LFNKFIGKPA PKTVHFPSGQ TLDVFEAAEL YQKEG----I ENSBTAP00000003252/1-969 MTRGTFANIK LFNKFIGKPA PKTIHFPSGQ TLDVFEAAEL YQKEG----I bmy_13476T0/1-889 MTRGTFANIK LFNKFIGKPA PKTVHFPSGQ TLDVFEAAEL YQKEG----I ENSP00000258886/1-963 MTRGTFANIK LFNKFIGKPA PKTIHFPSGQ TLDVFEAAEL YQKEG----I 851 900 BACU004844/1-1056 KSYLVRLLTY LPGRPIAEIP ISPQLLYEIG RVAAKLDKTL EKFHHPKLSS ENSTTRP00000000658/1-962 PLIILAGKKY GSGNSRDWAA KGPYLL---- GVKAVLAESY EKIHKDHLIG ENSBTAP00000003252/1-969 PLIILAGKKY GSGNSRDWAA KGPYLL---- GVKAVLAESY EKIHKDHLIG bmy_13476T0/1-889 PLIILAGKKY GSGNSRDWAA KGPYLL---- GVKAVLAESY EKIHKDHLIG ENSP00000258886/1-963 PLIILAGKKY GSGNSRDWAA KGPYLL---- GVKAVLAESY EKIHKDHLIG 901 950 BACU004844/1-1056 LHRENFIWNL KNVPLLEKYL YALGQNRNRE MVEQVVQLFK DEVMTKLSHF ENSTTRP00000000658/1-962 I--------- ---------- ---------- ---------- ---------- ENSBTAP00000003252/1-969 I--------- ---------- ---------- ---------- ---------- bmy_13476T0/1-889 I--------- ---------- ---------- ---------- ---------- ENSP00000258886/1-963 I--------- ---------- ---------- ---------- ---------- 951 1000 BACU004844/1-1056 RECINHGDLN DHNILIESSK SAFGDAVYQV SGILDFDDMS YGYYVFEVAI ENSTTRP00000000658/1-962 ---------- ---------- ---------- -GI------- ---------- ENSBTAP00000003252/1-969 ---------- ---------- ---------- -GI------- ---------- bmy_13476T0/1-889 ---------- ---------- ---------- -GI------- ---------- ENSP00000258886/1-963 ---------- ---------- ---------- -GI------- ---------- 1001 1050 BACU004844/1-1056 TIMYMMIESK TPIQSRRYDS RTTIFSPEGR LYQVEYAMEA IGHAGTCLGI ENSTTRP00000000658/1-962 ---------- APLQ------ ----FLP--- ---------- -GENADSLGL ENSBTAP00000003252/1-969 ---------- APLQ------ ----FLP--- ---------- -GESADSLGL bmy_13476T0/1-889 ---------- APLQ------ ----FLP--- ---------- -GENADSLGL ENSP00000258886/1-963 ---------- APLQ------ ----FLP--- ---------- -GENADSLGL 1051 1100 BACU004844/1-1056 LANDGVLLAA ERRNIHKLLD EVFFSEKIYK LNEDMACSVA GITSDANVLT ENSTTRP00000000658/1-962 SGRETFSLT- ---------- ---FPEEL-- --------SP GVTLNIKTST ENSBTAP00000003252/1-969 SGRETFSLT- ---------- ---FPEEL-- --------SP GVTLNIKTST bmy_13476T0/1-889 SGRETFSLT- ---------- ---FPEEL-- --------SP GVTLNIKTST ENSP00000258886/1-963 SGRETFSLT- ---------- ---FPEEL-- --------SP GITLNIQTST 1101 1150 BACU004844/1-1056 NELRLIAQRY LLQYQEPIPC EQLVTALCDI KQAYTQFGGK RPFGVSLLYI ENSTTRP00000000658/1-962 GKV------- ---------- ---------- ---------- --FSV---IA ENSBTAP00000003252/1-969 GKV------- ---------- ---------- ---------- --FSV---IA bmy_13476T0/1-889 GKV------- ---------- ---------- ---------- --FSV---IA ENSP00000258886/1-963 GKV------- ---------- ---------- ---------- --FSV---IA 1151 1200 BACU004844/1-1056 GWDKHYGFQL YQSDPSGNYG GWKATCIGNN SAAAVSMLKQ DYKEGEMTLK ENSTTRP00000000658/1-962 SFENDVEITL FK------HG GL-------- ----LNFVAR KFS------- ENSBTAP00000003252/1-969 SFENDVEITL YK------HG GL-------- ----LNFVAR KFS------- bmy_13476T0/1-889 SFENDVEITL FK------HG GL-------- ----LNFVAR KFS------- ENSP00000258886/1-963 SFEDDVEITL YK------HG GL-------- ----LNFVAR KFS------- 1201 1250 BACU004844/1-1056 SALALAIKVL NKTMDVSKLS AEKVEIATLT RENGKTVIRV LKQKEVEQLI ENSTTRP00000000658/1-962 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003252/1-969 ---------- ---------- ---------- ---------- ---------- bmy_13476T0/1-889 ---------- ---------- ---------- ---------- ---------- ENSP00000258886/1-963 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU004844/1-1056 KKHEEEEAKA EREKKEKEQK EKDK ENSTTRP00000000658/1-962 ---------- ---------- ---- ENSBTAP00000003252/1-969 ---------- ---------- ---- bmy_13476T0/1-889 ---------- ---------- ---- ENSP00000258886/1-963 ---------- ---------- ----