KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:26 2014 Check: 00 .. Name: ENSTTRP00000002319/1-747 Len: 802 Check: 2874 Weight: 1.00 Name: BACU005366/1-665 Len: 802 Check: 8180 Weight: 1.00 Name: ENSP00000301785/1-747 Len: 802 Check: 6769 Weight: 1.00 Name: bmy_19275T0/1-773 Len: 802 Check: 1650 Weight: 1.00 Name: ENSBTAP00000003261/1-749 Len: 802 Check: 3819 Weight: 1.00 // 1 50 ENSTTRP00000002319/1-747 -MEVKRLKVT ELRSELQRR- -GLDSRGLKV DLAQRLQEAL DAEMLEDEAG BACU005366/1-665 MPRGQPLAPS KWPNPKSPRW ASIYRRG--- ---------- ---------- ENSP00000301785/1-747 -MEVKRLKVT ELRSELQRR- -GLDSRGLKV DLAQRLQEAL DAEMLEDEAG bmy_19275T0/1-773 -MEVKRLKVT ELRSELQRR- -GLDSRGLKV DLAQRLQEAL DAEMLEDEAG ENSBTAP00000003261/1-749 -MEVKRLKVT ELRSELQRR- -GLDSRGLKV DLAQRLQEAL DAEMLEDEAG 51 100 ENSTTRP00000002319/1-747 GGGAGPGGAC KAEPRPVAAS GGGPGGDEEE D-EEEEEEDE EALLEDEDEE BACU005366/1-665 ---------- -AEPRPVAAS GGGPGGDEEE DEEEEEEEDE EALLEDEDEE ENSP00000301785/1-747 GGGAGPGGAC KAEPRPVAAS GGGPGGDEEE D-EEEEEEDE EALLEDEDEE bmy_19275T0/1-773 GGGAGPGGAC KAEPRPVAAS GGGPGGDEEE D-EEEEEEDE EALLEDEDEE ENSBTAP00000003261/1-749 GGGAGPGGAC KAEPRPVAAS GGGPGGDEEE D-EEEEEEDE EALLEDEDEE 101 150 ENSTTRP00000002319/1-747 PPPAEASGQA AQPPPEPP-- ---EAAAVEA AAEPDASEKP AEEATAESGG BACU005366/1-665 PPPAQASGQA AQPPPEPPEA AAVEAAAVEA AAEPDASEKP EEEATAESGG ENSP00000301785/1-747 PPPAQALGQA AQPPPEPP-- ---EAAAMEA AAEPDASEKP A-EATAGSGG bmy_19275T0/1-773 PPPAQASGQA AQPPPEPP-- ---EAXAVEA AAEPDASEKP EEEATAESGG ENSBTAP00000003261/1-749 PPPAQASGQA AQPPPEPP-- ---EAAAVEA EAEPDASEKA AEEATAESGG 151 200 ENSTTRP00000002319/1-747 VNGGEEQGTD KGEEDEPEDR SGDETPGSEA PGDKAAEEQG DDQDSEKSKP BACU005366/1-665 VNGGEEQGTG KGEEDEPEDR SGDETPGSEA PGDKAAEEQG DDQDSEKSKP ENSP00000301785/1-747 VNGGEEQGLG KREEDEPEER SGDETPGSEV PGDKAAEEQG DDQDSEKSKP bmy_19275T0/1-773 VNGGEEQGTG KGEEDEPEDR SGDETPGSEA PGDKAAEEQG DDQDSEKSKP ENSBTAP00000003261/1-749 VNGGEEQGTG KGEEDEPEER SGDETPGSEA PGDKAAEEQG DDQDSEKSKP 201 250 ENSTTRP00000002319/1-747 AGSDGERRGV KRQRDEKDEH GRAYYEFREE AYHSRSKSPP PPEEEAKDEE BACU005366/1-665 AGSDGERRGV KRQRDEKDEH GRAYYEFREE AYHSRSKSPP PPEEEAKDEE ENSP00000301785/1-747 AGSDGERRGV KRQRDEKDEH GRAYYEFREE AYHSRSKSPL PPEEEAKDEE bmy_19275T0/1-773 AGSDGERRGV KRQRDEKDEH GRAYYEFREE AYHSRSKSPP PPEEEAKDEE ENSBTAP00000003261/1-749 AGSDGERRGV KRQRDEKDEH GRAYYEFREE AYHSRSKSPP PPEEEVKDEE 251 300 ENSTTRP00000002319/1-747 EDQTLVNLDT YTSDLHFQVS KDRYGGQPLF SEKFPTLWSG ARSTYGVTKG BACU005366/1-665 EDQTLVNLDT C--------- ---------- ---------- ---------- ENSP00000301785/1-747 EDQTLVNLDT YTSDLHFQVS KDRYGGQPLF SEKFPTLWSG ARSTYGVTKG bmy_19275T0/1-773 EDQTLVNLDT YTSDLHFQVS KDRYGGQPLF SEKFPTLWSG ARSTYGVTKG ENSBTAP00000003261/1-749 EDHTLVNLDT YTSDLHFQVS KDRYGGQPLF SEKFPTLWSG ARSTYGVTKG 301 350 ENSTTRP00000002319/1-747 KVCFEAKVTQ NLPMKEGCTE VSLLRVGWSV DFSHPQ---- ---------- BACU005366/1-665 ---------- ---------- ---------- ---------- ---------- ENSP00000301785/1-747 KVCFEAKVTQ NLPMKEGCTE VSLLRVGWSV DFSRPQ---- ---------- bmy_19275T0/1-773 KVCFEAKITQ NLPMKEGCTE VSLLRVGWSV DFSHPQLGKV IFNLIILVFA ENSBTAP00000003261/1-749 KVCFEAKVTQ NLPMKEGCTE VSLLRVGWSV DFSHPQ---- ---------- 351 400 ENSTTRP00000002319/1-747 ---------- -LGEDEFSYG FDGRGLKAEN GQFEEFGQTF GESDVIGCFA BACU005366/1-665 ---------- ---EDEFSYG FDGRGLKAEN GQFEEFGQTF GENDVIGCFA ENSP00000301785/1-747 ---------- -LGEDEFSYG FDGRGLKAEN GQFEEFGQTF GENDVIGCFA bmy_19275T0/1-773 ALWEVTNLLI ILGEDEFSYG FDGRGLKAEN GQFEEFGQTF GENDVIGCFA ENSBTAP00000003261/1-749 ---------- -LGEDEFSYG FDGRGLKAEN GQFEEFGQTF GENDVIGCFA 401 450 ENSTTRP00000002319/1-747 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU005366/1-665 NFEAEEVELS FSKNGEDLGV AFRINKESLA DRPLLPHVLC KNCVVELNFG ENSP00000301785/1-747 NFETEEVELS FSKNGEDLGV AFWISKDSLA DRALLPHVLC KNCVVELNFG bmy_19275T0/1-773 NFEAEEVELS FSKNGEDLGV AFRINKESLA DRALLPHVLC KNCVVELNFG ENSBTAP00000003261/1-749 NFEAEEVELS FSKNGEDLGV AFRISKESLA DRALLPHVLC KNCVVELNFG 451 500 ENSTTRP00000002319/1-747 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLPGSGK BACU005366/1-665 QKEEPFFPPP EEFVFIHAVP VEERVRTAVP PKTIEECEVI LMVGLPGSGK ENSP00000301785/1-747 QKEEPFFPPP EEFVFIHAVP VEERVRTAVP PKTIEECEVI LMVGLPGSGK bmy_19275T0/1-773 QKEEPFFPPP EEFVFIHAVP VEERVRTAVP PKTIEECEVI LMVGLPGSGK ENSBTAP00000003261/1-749 QKEEPFFPPP EEFVFIHAVP VEERVRTAVP PKTIEECEVI LMVGLPASGK 501 550 ENSTTRP00000002319/1-747 TQWALKYAKE NPEKRYNVLG AETVLNQMRM KGLEEPQMDP KSRDLLVQQA BACU005366/1-665 TQWALKYTKE NPEKRYNVLG AETVLNQMRM KGLEEPQMDP KSRDLLVQQA ENSP00000301785/1-747 TQWALKYAKE NPEKRYNVLG AETVLNQMRM KGLEEPEMDP KSRDLLVQQA bmy_19275T0/1-773 TQWALKYTKE NPEKRYNVLG AETVLNQMRM KGLEEPQMDP KSRDLLVQQA ENSBTAP00000003261/1-749 TQWALKYAKE NPEKRYNVLG AETVLNQMRM KGLEEPEMDP KSRDLLVQQA 551 600 ENSTTRP00000002319/1-747 SQCLSKLVQI ASRTKRNFIL DQCNVYNSGQ RRKLLLFKTF SRKVVVVVPN BACU005366/1-665 SQCLSKLVQI ASRTKRNFIL DQCNVYNSGQ RRKLLLFKTF SRKVVVVVPN ENSP00000301785/1-747 SQCLSKLVQI ASRTKRNFIL DQCNVYNSGQ RRKLLLFKTF SRKVVVVVPN bmy_19275T0/1-773 SQCLSKLVQI ASRTKRNFIL DQCNVYNSGQ RRKLLLFKTF SRKVVVVVPN ENSBTAP00000003261/1-749 SQCLSKLVQI ASRTKRNFIL DQCNVYNSGQ RRKLLLFKTF SRKVVVVVPN 601 650 ENSTTRP00000002319/1-747 EEDWKKRLEL RKEVEGDDVP ESIMLEMKAN FSLPEKCDYM DEVTYGELEK BACU005366/1-665 EEDWKKRLEL RKEVEGDDVP ESIMLEMKAN FSLPEKCDYM DEVTYGELEK ENSP00000301785/1-747 EEDWKKRLEL RKEVEGDDVP ESIMLEMKAN FSLPEKCDYM DEVTYGELEK bmy_19275T0/1-773 EEDWKKRLEL RKEVEGDDVP ESIMLEMKAN FSLPEKCDYM DEVTYGELEK ENSBTAP00000003261/1-749 EEDWKKRLEL RKEVEGDDVP ESIMLEMKAN FSLPEKCDYM DEVTYGELEK 651 700 ENSTTRP00000002319/1-747 EEAQPIVTKY REEARKLLPP SEKRTNRRNN RNKRNRQNRS RGQGY----- BACU005366/1-665 EEAQPIVTKY KEEARKLLPP SEKRTNRRNN RNKRNRQNRS RGQGYDVEPG ENSP00000301785/1-747 EEAQPIVTKY KEEARKLLPP SEKRTNRRNN RNKRNRQNRS RGQGY----- bmy_19275T0/1-773 EEAQPIVTKY KEEARKLLPP SEKRTNRRNN RNKRNRQNRS RGQGY----- ENSBTAP00000003261/1-749 EEAQPIVTKY KEEARKLLPP SEKRTNRRNN RNKRNRQNRS RGQGY----- 701 750 ENSTTRP00000002319/1-747 ---------- ----VGGQRR GYDNRAYGQQ YWGQSGNRGG YRNFYDRYRG BACU005366/1-665 PHASCLSALS ISLPVGGQRR GYDNRAYGQQ YWGQSGNRGG YRNFYDRYRG ENSP00000301785/1-747 ---------- ----VGGQRR GYDNRAYGQQ YWGQPGNRGG YRNFYDRYRG bmy_19275T0/1-773 ---------- ----VGGQRR GYDTRAYGQQ YWGQSGSRGG YRNFYDRYRG ENSBTAP00000003261/1-749 ---------- ----VGGQRR GYDNRAYGQQ CWGQSGNRGG YRNFYDRYRG 751 800 ENSTTRP00000002319/1-747 DYDRFYGRDY EYNRYRDYYR -QYSRDWQ-Y YYHHPQDRDR YYRNYYGYQG BACU005366/1-665 DYDRFYGRDY EYNRYRDYYR -QYSRDWQNY YYHHPQDRDR YYRNYYGYQG ENSP00000301785/1-747 DYDRFYGRDY EYNRYRDYYR -QYNRDWQSY YYHHPQDRDR YYRNYYGYQG bmy_19275T0/1-773 DYDRFYGRDY EYNRYRDYYR -QYSRDWQNY YYHHPQDRDR YYRNYYGYQG ENSBTAP00000003261/1-749 DYDRFYGRDY EYNRYRDYYR HQYTRDWQNY YYHHPQDRDR YYRNYYGYQG 801 850 ENSTTRP00000002319/1-747 YR BACU005366/1-665 YR ENSP00000301785/1-747 YR bmy_19275T0/1-773 YR ENSBTAP00000003261/1-749 YR