KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 16:20:27 2014 Check: 00 ..
Name: ENSTTRP00000014848/1-595 Len: 610 Check: 1482 Weight: 1.00
Name: bmy_16794T0/1-415 Len: 610 Check: 302 Weight: 1.00
Name: ENSBTAP00000003267/1-544 Len: 610 Check: 5040 Weight: 1.00
Name: BACU009054/1-546 Len: 610 Check: 3796 Weight: 1.00
//
1 50
ENSTTRP00000014848/1-595 TLLLADLKRA GTMGSSCVGL RISAAPRGEG GASRVIRIKV RGLEMTTPAG
bmy_16794T0/1-415 ---------- ---------- ---------- ---------- ----MTTPAG
ENSBTAP00000003267/1-544 ---------- ---------- ---------- ---------- ----MTTPAG
BACU009054/1-546 ---------- ---------- ---------- ---------- ----MTTPAG
51 100
ENSTTRP00000014848/1-595 SGTGFGSVSW WGLSPAVDLQ AERVAAGGVL QATPQPAVVL SGPPVDPDSQ
bmy_16794T0/1-415 SGTGFGSVSW WGLSPAVDLQ AE-------- ---------- ----------
ENSBTAP00000003267/1-544 SGTGFGSVSW WGLSPAVDLQ AE-------- ---------- -SPPVDPDSQ
BACU009054/1-546 SGTGFGSVSW WGLSPAVDLQ AE-------- ---------- -SPPVDPDSQ
101 150
ENSTTRP00000014848/1-595 ADTEHGTPEL NVLLLGSVDG RHLLRTLTRA ALWPRRRFRF YVLENNMEAV
bmy_16794T0/1-415 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000003267/1-544 AETEHETPEL NVLLLGSVDG RHLLRTLARA ALWPRRRFHF YVLENNLEAV
BACU009054/1-546 ADTEHGTPEL NVLLLGSVDG RHLLRTLARA ALWPRRRFRF YVLENNMEAV
151 200
ENSTTRP00000014848/1-595 ARHMLIFSLA LEDPEKMGLQ ERSETFLEVW GNALLRPSVA AFVRTQAGRL
bmy_16794T0/1-415 ---------- ---------- KRSETFLEMW GNALLRPPVA AFVRAQAGRL
ENSBTAP00000003267/1-544 ARHILIFSLA LEDPEKMGLQ ERSETFLEVW GNALLRPPVA AFVRAQAGRL
BACU009054/1-546 ARHMLIFCLA LEDPEKMGLQ ERSETFLEVW GNSLLRPPVA AFVRAQAGRL
201 250
ENSTTRP00000014848/1-595 ARLVPEPDRL AEQLPWLSLG ALKFRERDAL EAVFRFWAGG EKGPEAFPMS
bmy_16794T0/1-415 ARLVPEPDRL AEQLPWLSLG ALKFRERDAL EAVFRFWAGG EKGPEAFPMS
ENSBTAP00000003267/1-544 AHLVPEPDRL AEQLPWLSLG ALKFRERDAL EAVFRFWAGG EKGPEAFPMS
BACU009054/1-546 ARLVPEPDRL AEQLPWLSLG ALKFRERDAL EAVFRFWAGG EKGPEAFPMS
251 300
ENSTTRP00000014848/1-595 RLWDSRLRHY LGSRYDARRG VSDWDLHMKL HDRGARVIHT SEFRRWRDTG
bmy_16794T0/1-415 RLWDSRLRHY LGSRYDARRG VSDWDLHMKL HDRGARVIHT SEFRRWRDTG
ENSBTAP00000003267/1-544 RLWDSRLRQY LGSRYDARHG VSDWDLHMKL HDRGARVIHT REFRRWRDTG
BACU009054/1-546 RLWDSRLRHY LGSRYDARRG VSDWDLHMKL HDRGARVIHT SEFRRWRDTG
301 350
ENSTTRP00000014848/1-595 VAFELRDSSA YHVPNRTLAS GRLLSHRGER VAARGYWGDI VTGPFVAFGI
bmy_16794T0/1-415 VAFELRDASA YHVPNRTLAS GRLLSHRGER VAARGYWGDI VTGPFVAFGI
ENSBTAP00000003267/1-544 VAFELRDSSA YHVPNRTLAS GRLLSHRGER VAARGYWGDI ATGPFVAFGI
BACU009054/1-546 VAFELRDASA YHVPNRTLAS GRLLSHRGER VAARGYWGDI VTGPFVAFGI
351 400
ENSTTRP00000014848/1-595 EADDETLLKT SNGQPIKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_16794T0/1-415 EADDETLLRT SNGQPIKPRI -RPRPFSPKD C-------GR DHAAQRDGAV
ENSBTAP00000003267/1-544 EADDETLLRT SNGQPVKTAC -EITEHNVAE LFREMAAWGH PRAAEGDPEQ
BACU009054/1-546 EADDETLLRT SNGQPIKTAG -EITQHNVTE LFREMAAWGR PRAAQGDPAQ
401 450
ENSTTRP00000014848/1-595 XXXXXXXXXX XXXPVPESFT VHFLSLGSAQ TLHHKSCYKG RFQLLYVACG
bmy_16794T0/1-415 PRDGRLGAPE SRPGRPRAGA ---------- ---RRRGWK- ----------
ENSBTAP00000003267/1-544 VQGGAEGSSE PAAPAPEPFT VHFLSLDSAH TLHHKSCYMG QFQLLYVACG
BACU009054/1-546 VQGDADGSPE PAAPVPESFA VHFLSLGSAL TLHHKSCYKG RFQLLYMACG
451 500
ENSTTRP00000014848/1-595 MVHLLSPELG ACVAPGGRLI VELAQFLVDL RQEQLQGFST RVGELAQAAG
bmy_16794T0/1-415 ---------- ----PG---- ---AWFLVDL RQEQLQGFST RVGELAQAAG
ENSBTAP00000003267/1-544 MVHLLSAELG ACVAPGGRLI VELAQFLVDL RQEQLQAFSS RVGELAQAAG
BACU009054/1-546 MVHLLSPELG ACVAPGGRLI VELAQFLVDL RQEQLQGFST RVGELAQAAG
501 550
ENSTTRP00000014848/1-595 FAPQPGARSS QTFARFYKAG DSAPSHKDPA VGSGTPPPEV LVPPLEATNP
bmy_16794T0/1-415 FAPQPGARRS QTFARFYKAG DSAPSHKDPA VGSGTPSSEV LAPPLEATNP
ENSBTAP00000003267/1-544 FAPQLGGKPS DTFARFYKAG DSAPGHEDPA VESGTPPPEV LAPPLEATDP
BACU009054/1-546 FAPHPGARRS QTFARFYKAG NSAPSHKDPA VGSGTPPPGV LAPPLEATNP
551 600
ENSTTRP00000014848/1-595 PPEDLTQPLE GGIPPSEPLK QPSESQASLL EALVPPRESD ----------
bmy_16794T0/1-415 PPEDLTQPLE GGTPPSEPLR RPSESQASLL EALVPPTGSQ TPKPESLTVP
ENSBTAP00000003267/1-544 PSEDRTQPLE SGNPPSEPLK LTSESQASLL EASVPPTGSQ APKSENQTVP
BACU009054/1-546 PPEDLTQPLE GGTPPSEPLK RPSESQASLL EALVPPTGSQ TPKPESLTVP
601 650
ENSTTRP00000014848/1-595 PQTRV-----
bmy_16794T0/1-415 PETNSPIPNF
ENSBTAP00000003267/1-544 PETKYPIP--
BACU009054/1-546 PETNSPIPNF