KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:29 2014 Check: 00 .. Name: ENSTTRP00000009880/1-986 Len: 1136 Check: 5411 Weight: 1.00 Name: ENSP00000254323/1-989 Len: 1136 Check: 4652 Weight: 1.00 Name: BACU009399/1-1136 Len: 1136 Check: 9647 Weight: 1.00 Name: ENSBTAP00000003278/1-992 Len: 1136 Check: 6939 Weight: 1.00 Name: bmy_04844T0/1-1074 Len: 1136 Check: 3499 Weight: 1.00 // 1 50 ENSTTRP00000009880/1-986 ---------- -------MDP PAAKRSRDGP AGPEERDAG- --------AG ENSP00000254323/1-989 ---------- -------MEP PAAKRSRGCP AGPEERDAG- --------AG BACU009399/1-1136 MAQGQRKFQA RKPAKSKTAA AASERNRGPR KGGEERAGDW GGEVDPRFSG ENSBTAP00000003278/1-992 ---------- ---------- ---------- ---------- ---------- bmy_04844T0/1-1074 ---------- -------MDP PAAKRSRDCP AGPEERDAG- --------AG 51 100 ENSTTRP00000009880/1-986 AVRGRGRPEA LLDLSAKRVA DSWVFEQVEE RFSRVPEPVQ KRIVF-SFPR ENSP00000254323/1-989 AARGRGRPEA LLDLSAKRVA ESWAFEQVEE RFSRVPEPVQ KRIVFWSFPR BACU009399/1-1136 LTRAHLSPGL VIAPKKARIV QQQKLKKVEE RFSRVPEPVQ KRIVFWSFPR ENSBTAP00000003278/1-992 ---------- ---------- ---------- ---------- ---------- bmy_04844T0/1-1074 AVRGRSRPEA LLDLSAKRVA ESWAFEQVTE ---------- ---------- 101 150 ENSTTRP00000009880/1-986 SEREICMYSS LG-QSPEGEH DARMPFTRGM -LVQSGAVDS VLQEGFHLSG ENSP00000254323/1-989 SEREICMYSS LGYPPPEGEH DARVPFTRGL HLLQSGAVDR VLQVGFHLSG BACU009399/1-1136 SEREICMYSS LGYQPPEGEH DARVPFTRGL HLLQSGAVDR VLQVGFHLSG ENSBTAP00000003278/1-992 ---------- ---------- ---------- ---------- VLVLGFHLSG bmy_04844T0/1-1074 DEREICMYSS LGYQPPEGEH DARVPFTRGL HLLQSGAVDR VLQVGFHLSG 151 200 ENSTTRP00000009880/1-986 NIREPGGPGE PERLYHVSIS FDRCKITSVS CGCDNRDLFY CAHVVALSLY ENSP00000254323/1-989 NIREPGSPGE PERLYHVSIS FDRCKITSVS CGCDNRDLFY CAHVVALSLY BACU009399/1-1136 NIREPGGPGE PERLYHVSIS FDRCKITSVS CGCDNRDLFY CAHVVALSLY ENSBTAP00000003278/1-992 NVREPGGPGE PERLYHVSIS FDRCKITSVT CGCDNRDLFY CAHVVALSLH bmy_04844T0/1-1074 NIREPGGPGE PERLYHVSIS FDRCKITSVS CGCDNRDLFY CAHVVALSLY 201 250 ENSTTRP00000009880/1-986 RIRHARQVEL RLPISETLSQ MNRDQLQKFV QYLISAHHTE VLPTAQRLAD ENSP00000254323/1-989 RIRHAHQVEL RLPISETLSQ MNRDQLQKFV QYLISAHHTE VLPTAQRLAD BACU009399/1-1136 RIRHARQVEL RLPISETLSQ MNRDQLQKFV QYLISAHHTE VLPTAQRLAD ENSBTAP00000003278/1-992 RIRHAHQVEL RLPISETLSQ MNRDQLQKFV QYLISAHHTE VLPTAQRLAD bmy_04844T0/1-1074 RIRHARQVEL RLPISETLSQ MNRDQLQKFV QYLISAHHTE VLPTAQRLAD 251 300 ENSTTRP00000009880/1-986 EILLLGSEIN LVHGAPDPTA GAGIEDANCW HLDEEQIQEQ VKQLLSNGGY ENSP00000254323/1-989 EILLLGSEIN LVNGAPDPTA GAGIEDANCW HLDEEQIQEQ VKQLLSNGGY BACU009399/1-1136 EILLLGSEIN LVHGAPDPTA GAGIEDANCW HLDEEQIQEQ VKQLLSNGGY ENSBTAP00000003278/1-992 EILLLGSEIN LVHGAPDPTA GAGIEDANCW HLDEEQIQEQ VKQLLSNGGY bmy_04844T0/1-1074 EILLLGSEIN LVHGAPDPTA GAGIEDANCW HLDEEQIQEQ VKQLLSNGGY 301 350 ENSTTRP00000009880/1-986 YGASQQLRSM FCKVREMLRM RDSNGARMLI LMTEQFLQDP RLALWRQQGA ENSP00000254323/1-989 YGASQQLRSM FSKVREMLRM RDSNGARMLI LMTEQFLQDT RLALWRQQGA BACU009399/1-1136 YGASQQLRSM FCKVREMLRM RDSNGARMLI LMTEQFLQDP RLALWRQQGA ENSBTAP00000003278/1-992 YGASQQLRSM FCKVREMLRM RDSNGARMLI LMTEQFLQDP RLALWRQQGA bmy_04844T0/1-1074 YGASQQLRSM FCKVREMLRM RDSNGARMLI LMTEQFLQDP RLALWRQQGA 351 400 ENSTTRP00000009880/1-986 GMTDKCRQLW DELXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254323/1-989 GMTDKCRQLW DELGALWVCV VLSPHCKPEE RAGWLQLLSR WDKLDVCPLE BACU009399/1-1136 GMTDKCRQLW DELGALWVCI VLSPHCKPEE RTSWLQLLSK WDKLDVCPLE ENSBTAP00000003278/1-992 GMTDKCRQLW DELGALWVCV ILSPHCRPEE RTSWLQLLSK WDKLDVCPLE bmy_04844T0/1-1074 GMTDKCRQLW DEL------- --------EE RTSWLQLLSK WDKLDVCPLE 401 450 ENSTTRP00000009880/1-986 XXXXXXXXXX XXXXXXXXX- ---------- ---------- ---------- ENSP00000254323/1-989 EGNYSFDGPS LQPTMA--PA P--------- ---------- ---------- BACU009399/1-1136 EGNYSFDGPS LQPTVALSPG PEEEEEEEEE VEAAGSRHTV FGRALQAGSL ENSBTAP00000003278/1-992 EGNYSFDGPS LQPTAALIPG P----EEEVM AMAAGSRHTV FGRALQAGSL bmy_04844T0/1-1074 EGNYSFDGPS LQPTVALSPG P-EEEEEEEE VEAAGSRHTV FGRALQAGSL 451 500 ENSTTRP00000009880/1-986 ---------- ---------- ---------- ---------- ---------- ENSP00000254323/1-989 ---------- ---------- ---------- ---------- ---------- BACU009399/1-1136 HWSDAHLQRI LASDSYGPSL TSNGGGDKPT FDPQGRPLWL GEPFPTACAR ENSBTAP00000003278/1-992 HWSDDHLQRI LASDSYSPNL TGNGGSDKPT FDPQGRPLWL GEPFPTTCAR bmy_04844T0/1-1074 HWSDAHLQRI LASDSYGPSL TSNGGGDKPT FDPQGRPLWL GEPFPTACAR 501 550 ENSTTRP00000009880/1-986 ---------- ---------- ---------- ---------- XLLQKGSTCI ENSP00000254323/1-989 ---------- ---------- ---------- ---------- ELLQKGSTCI BACU009399/1-1136 VDTLRAHGYP RQALRLAGAI VNTLRLQRRH QLETYKQQKK ELLQKGSTCI ENSBTAP00000003278/1-992 VDTLRAHGYP RQALRLASAI VNTLRLQQRH QLQIYKQQKK ELLQKGSTCI bmy_04844T0/1-1074 VDTLRAHGYP RQALRLAGAI VNTLRLQRRH QLETYKQQKK ELLQKGSTCI 551 600 ENSTTRP00000009880/1-986 TNMEGWVGHP LDPIGCLCRA LLEACHLEEE TLAIYPESGP EKRKVAYQHV ENSP00000254323/1-989 TNTEGWVGHP LDPIGCLCRA LLEACRLEEE TLTLYPDSGP EKRKVAYQHV BACU009399/1-1136 TNMEGWVGHP LDPIGCLCRA LLEACHLEEE TLAIYPDSGP EKRKVAYQHV ENSBTAP00000003278/1-992 TNMEGWVGHP LDPIGCLCRA LLEACRLEEE TLAIYPDSGP EKRKVAYQHV bmy_04844T0/1-1074 TNMEGWVGHP LDPIGCLCRA LLEACHLEEE TLAIYPDSGP EKRKVAYQHV 601 650 ENSTTRP00000009880/1-986 PVPGSPGESY LAMALEVALL GLGQQRALPE GLYAQDKVVR NEEQLLALLE ENSP00000254323/1-989 PVPGSPGESY LVLALEVALL GLGQQRALPE GLYAQDKVVR NEEQLLALLE BACU009399/1-1136 PVPGSPGESY LAMALEVALL GLGQQRALPE GLYAQDKVVR NEEQLLALLE ENSBTAP00000003278/1-992 PVPGSPGESY LAMALEVALL GLGQQRALPE GLYAQDKVVR NEEQLLALLE bmy_04844T0/1-1074 PVPGSPGESY LAMALEVALL GLGQQRALPE GLYAQDKVVR NEEQLLALLE 651 700 ENSTTRP00000009880/1-986 EVELDERLVQ VLRKQAGQLL EGGPFSGFGE VLFRESVPMH TCARYLFTAL ENSP00000254323/1-989 EVELDERLVQ VLRKQAGLLL EGGPFSGFGE VLFRESVPMH TCARYLFTAL BACU009399/1-1136 EVELDERLVQ VLRKQAGQLL EGGPFSGFGE VLFRESVPMH TCARYLFTEL ENSBTAP00000003278/1-992 EVELDERLVQ VLRKQAGQLL EGGPFSGFGE VLFRESVPMH TCARYLFTAL bmy_04844T0/1-1074 EVELDERLVQ VLRKQAGQLL EGGPFSGFGE VLFRESVPMH TCARYLFTAL 701 750 ENSTTRP00000009880/1-986 LPYDPDLAYR LALRAMRLPI LETAFPAGEP RGNXXXXXXX XXXXXXXXXX ENSP00000254323/1-989 LPHDPDLAYR LALRAMRLPI LETAFPAGEP HPSPLDSIMS NRFPRWFILG BACU009399/1-1136 LPHDPDLAYR LALRAMRLPI LETAFPAGEP HGNPLDSIVS NRFPRWFILG ENSBTAP00000003278/1-992 LPHDPDLAYR LALRAMRLPV LETAFPAGEP PSNPLDSIMS NRFPRWFILG bmy_04844T0/1-1074 LPHDPDLAYR LALRAMRLPI LETAFPAGEP HGNPLDSIVS NRFPRWFILG 751 800 ENSTTRP00000009880/1-986 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254323/1-989 HLETRQCELA STMLTAAKGD PKWLHTVLGS IQQNIHSPAL LFKLAQDACK BACU009399/1-1136 HLETRQCELA SAMLTAAKGD PKWLHAVLGS IQQNIHSPAL LFKLAQDACK ENSBTAP00000003278/1-992 HLETRQCELA SAMLTAAKGD PKWLHAVLGS IQQNIHSPAL LFKLAQDACK bmy_04844T0/1-1074 HLETRQCELA SAMLTAAKGD PKWLHAVLGS IQQNIHSPAL LFKLAQDACK 801 850 ENSTTRP00000009880/1-986 XXXXXXXXXX XXXXXXXXXX XXXVMQMTLN TMTWRRREMV RWLVSCATEV ENSP00000254323/1-989 TATPVSAPPD TTLLGIALEL GLQVMRMTLN VMTWRRREMV RWLVSCATEI BACU009399/1-1136 TATPASAPPD TTLLGIALEL GLQVMRMTLN TMTWRRREMV RWLVSCATEV ENSBTAP00000003278/1-992 TATPASAPPD TTLLGIALEL GLQVMRMTLN TMTWRRREMV RWLVSCATEI bmy_04844T0/1-1074 TATPASAPPD TTLLGIALEL GLQVMRMTLN TMTWRRREMV RWLVSCATEV 851 900 ENSTTRP00000009880/1-986 GLQALMNIMQ NWYSLFTPVE AATIVAVTGT THATLLRLQL DAPRREELWA ENSP00000254323/1-989 GPQALMNIMQ NWYSLFTPVE AATIVAVTGT THATLLRLQL DTSRREELWA BACU009399/1-1136 GLQALMNIMQ NWYSLFTPVE AATIVAVTGT SHATLLRLQL DAPRREELWA ENSBTAP00000003278/1-992 GPQALMNIMQ NWYSLFTPVE AATIVAVTGT THATLLRLQL DAARREELWA bmy_04844T0/1-1074 GLQALMNIMQ NWYSLFTPVE AATIVAVTGT THATLLRLQL DAPRREELWA 901 950 ENSTTRP00000009880/1-986 CARTLALQCA MKDPQNCALP ALTLCEKNHA AFEAAYQIVL DAAAGGLGHA ENSP00000254323/1-989 CARTLALQCA MKDPQNCALP ALTLCEKNHS AFEAAYQIVL DAAAGGLGHA BACU009399/1-1136 CARTLALQCA MKDPQNCALP ALTLCEKNHA AFEAAYQIVL DAAAGGLGHA ENSBTAP00000003278/1-992 CARTLALQCA MKDPQNCALP ALTLCEKNQA AFEAAYQIVL DAAAGGLGHA bmy_04844T0/1-1074 CARTLALQCA MKDPQNCALP ALTLCEKNHA AFEAAYQIVL DAAAGGLGHA 951 1000 ENSTTRP00000009880/1-986 HLFTVARYME HRGLPLRAYK LATLALAQLS IAFNQDSHSA VNDVLWACSL ENSP00000254323/1-989 HLFTVARYME HRGLPLRAYK LATLALAQLS IAFNQDSHPA VNDVLWACSL BACU009399/1-1136 HLFTVARYME HRGLPLRAYK LATLALAQLS IAFNQDSHPA VNDVLWACSL ENSBTAP00000003278/1-992 HLFTVARYME HRGLPLRAYK LATLALAQLS IAFNQDSHPA VNDVLWACSL bmy_04844T0/1-1074 HLFTVARYME HRGLPLRAYK LATLALAQLS IAFNQDSHPA VNDVLWACSL 1001 1050 ENSTTRP00000009880/1-986 SHFLGRHELS AIVPLIIRSI HCAPMLSDIL RRWTLSAPGL GPLGARRAAK ENSP00000254323/1-989 SHSLGRHELS AIVPLIIRSI HCAPMLSDIL RRWTLSAPGL GPLGARRAAK BACU009399/1-1136 SHSLGRHELS AIVPLIIRSI HCAPMLSDIL RRWTLSAPGL GPLGARRAAK ENSBTAP00000003278/1-992 SHSLGRHELS AIVPLIIRSI HCAPMLSDIL RRWTLSAPGL GPLGARRAAK bmy_04844T0/1-1074 SHSLGRHELS AIVPLIIRSI HCAPMLSDIL RRWTLSAPGL GPLGARRAAK 1051 1100 ENSTTRP00000009880/1-986 PLGADRAPLC QLLDAAVAAY ITTSHSRLTH ISPRHYGDFI EFLGKARETF ENSP00000254323/1-989 PLGADRAPLC QLLDAAVTAY ITTSHSRLTH ISPRHYGDFI EFLGKARETF BACU009399/1-1136 PLGADRAPLC QLLDAAVAAY ITTSHSRLTH ISPRHYGDFI EFLGKARETF ENSBTAP00000003278/1-992 PLGADRAPLC QLLDAAVAAY ITTSHSRLTH ISPRHYSDFI EFLGKARETF bmy_04844T0/1-1074 PLGADRAPLC QLLDAAVAAY ITTSHSRLTH ISPRHYGDFI EFLGKARETF 1101 1150 ENSTTRP00000009880/1-986 LLAPDGHLQF AQFLENLKQT YKGKKKLMLL VRERFG ENSP00000254323/1-989 LLAPDGHLQF SQFLENLKQT YKGKKKLMLL VRERFG BACU009399/1-1136 LLAPDGHLQF AQFLENLKQT YKGKKKLMLL VRERFG ENSBTAP00000003278/1-992 LLAPDGHLQF AQFLENLKQT YKGKKKLMLL VRERFG bmy_04844T0/1-1074 LLAPDGHLQF AQFLENLKQT YKGKKKLMLL VRERFG