KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:30 2014 Check: 00 .. Name: bmy_13637T0/1-588 Len: 786 Check: 6142 Weight: 1.00 Name: ENSP00000336923/1-786 Len: 786 Check: 8878 Weight: 1.00 Name: ENSTTRP00000013693/1-734 Len: 786 Check: 4518 Weight: 1.00 Name: ENSBTAP00000003283/1-785 Len: 786 Check: 4948 Weight: 1.00 Name: BACU013561/1-683 Len: 786 Check: 2135 Weight: 1.00 // 1 50 bmy_13637T0/1-588 MGHPPLEFSD CYLDSPDFRE RLKCYEQELE RTNKFIKDVI KDGNALISAM ENSP00000336923/1-786 MGLQPLEFSD CYLDSPWFRE RIRAHEAELE RTNKFIKELI KDGKNLIAAT ENSTTRP00000013693/1-734 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003283/1-785 MGLQPLEFSD CYLDSPWFRE RIRAHEAELE RTNKFIKELI KDGKNLIAAT BACU013561/1-683 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13637T0/1-588 RNYSSAVQKF SQTLQSFQFD FIGDTLTDDE INIAESFKEF AELLNEVENE ENSP00000336923/1-786 KSLSVAQRKF AHSLRDFKFE FIGDAVTDDE RCIDASLREF SNFLKNLEEQ ENSTTRP00000013693/1-734 --LSAAQRKF AHSLRDFKFE FIGDAETDDE RCIDASLREF SNFLKNLEEQ ENSBTAP00000003283/1-785 KTLSAAQRKF AHSLRDFKFE FIGDAETDDE RCIDASLREF SNFLKNLEEQ BACU013561/1-683 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_13637T0/1-588 RMMMVHNASD LLIKPLENFR KEQIGFTKER KKKFEKDGER FYSLLDRHLH ENSP00000336923/1-786 REIMALSVTE TLIKPLEKFR KEQLGAVKEE KKKFDKETEK NYSLIDKHLN ENSTTRP00000013693/1-734 REIMALSVTE TLIKPLEKFR KEQLGAVKEE KKKFDKETEK NYSLIDKHLN ENSBTAP00000003283/1-785 REIMALSVTE TLIKPLEKFR KEQLGAVKEE KKKFDKETER NYSLIDKHLN BACU013561/1-683 ---MALSVTE TLIKPLEKFR KEQLGAVKEE KKKFDKETEK NYSVIDKHLN 151 200 bmy_13637T0/1-588 LSSKKKESQL QEADLQVDKE RHNFFESSLD YVYQIQEVQE SKKFNIVEPV ENSP00000336923/1-786 LSAKKKDSHL QEADIQVEQN RQHFYELSLE YVCKLQEIQE RKKFEFVEPM ENSTTRP00000013693/1-734 LSAKKKDSHL QEADIQVEQN RQHFYELSLE YVCKLQEIQE RKKFEFVEPM ENSBTAP00000003283/1-785 LSAKKKDSHL QEADIQVEQN RQHFYELSLE YVCKLQEIQE RKKFEFVEPM BACU013561/1-683 LSAKKKDSHL QEADIQVEQN RQHFYELSLE YVCKLQEIQE RKKFEFVEPM 201 250 bmy_13637T0/1-588 LAFLHSLFIS NSLTVELTQD FLPYKQQLQL SLQNTRNHFS STREEMEELK ENSP00000336923/1-786 LSFFQGMFTF YHQGHELAKD FNHYKMELQI NIQNTRNRFE GTRSEVEELM ENSTTRP00000013693/1-734 LSFFQGMFTF YHQGHELAKD FNHYKMELQI NIQNTRNRFE GTRSEVEELM ENSBTAP00000003283/1-785 LSFFQGMFTF YHQGHELAKD FNHYKMELQI NIQNTRNRFE GTRSEVEELM BACU013561/1-683 LSFFQGMFTF YHQGHELAKD FNHYKMELQI NIQNTRNRFE GTRSEVEELM 251 300 bmy_13637T0/1-588 KRMKEAPQTC KLPGQPTIEG YLYTQEKW-- ALGISWVKYY CQYEKETKTL ENSP00000336923/1-786 NKIRQNPKDH KRASQFTAEG YLYVQEKRPA PFGSSWVKHY CMYRKAAKKF ENSTTRP00000013693/1-734 NKIRQNPKDH KRASQFTAEG YLYVQEKRPP PFGSSWVKHY CMYRKAAKKF ENSBTAP00000003283/1-785 NKIRQNPKDH KRASQFTAEG YLYVQEKRPP PFGSSWVKHY CMYRKAAKKF BACU013561/1-683 NKIRQNPKDH KRASQFTAEG YLYVQEKRPP PFGSSWVKHY CMYRKAAKKF 301 350 bmy_13637T0/1-588 TMTPMEQKPG AKQQGPLDLT LKYCVRRKTE SIDKRFCFDI EANERPG-TI ENSP00000336923/1-786 NMIPFEHRSG GKLGDGEVFF LKECTKRHTD SIDRRFCFDI EAADRPGVSL ENSTTRP00000013693/1-734 NIIPFEHRSG GKLGDGEVFF LKECIRRHTD SIDRRFCFDV EAADRPGVSL ENSBTAP00000003283/1-785 TMIPFEHRSG GKLGDGEVFF LKECIRRHTD SIDRRFCFDV EAADRPGISL BACU013561/1-683 NIIPFEHRSG GKLGDGEVFF LKECTRRHTD SIDRRFCFDV EAADRPGVSL 351 400 bmy_13637T0/1-588 TLQALSEANR RLWMEAMDGK EPIYHS---P ITKQEE--ME LNEVGFKFVR ENSP00000336923/1-786 TMQAFSEEER KQWLEALGGK EALSHSFNTA IIPRPEGNAQ LDKMGFTIIR ENSTTRP00000013693/1-734 TMQAFSEEER KQWLEALGGK EALFPSFNRA IIPRPEGSAQ LDKMGFTILR ENSBTAP00000003283/1-785 TMQAFSEEER KQWLEVLGGK EALFPSFNRA IIPRPEGSAQ LDKMGFTILR BACU013561/1-683 TMQAFSEEER KQWLEALGGK EALFPSFNRA IIPRPEGSAQ LDKMGFTILR 401 450 bmy_13637T0/1-588 KCINVIETK- ---------- ---------- ----DPKCPG DVDFHNS-DW ENSP00000336923/1-786 KCISAVETRG INDQGLYRVV GVSSKVQRLL SMLMDVKTCN EVDLENSADW ENSTTRP00000013693/1-734 KCISAVETRG INDQGLYRVV GVSSKVQRLL SMLMXXXXXX XXXXXXXXXX ENSBTAP00000003283/1-785 KCIRAVETRG INDQGLYRVV GVSSKVQRLL SMLMDVKTCN EVDLENSVDW BACU013561/1-683 KCISAVETRG INDQGLYRVV GVSSKVQRLL SMLMDVKTCN EVDLENSIDW 451 500 bmy_13637T0/1-588 DIKTITSSLK FYL------- ---------- ---------- ---------- ENSP00000336923/1-786 EVKTITSALK QYLRSLPEPL MTYELHGDFI VPAKSGSPES RVNAIHFLVH ENSTTRP00000013693/1-734 XXXXXXXXLK QYLRSLPEPL MTYELHGDFI VPAKSGSPES RVNAIHFLVH ENSBTAP00000003283/1-785 EVKTITSALK QYLRSLPEPL MTYELHGDFI VPAKSGSPES RVNAIHFLVH BACU013561/1-683 EVKTITSALK QYLRSLPEPL MTYELHGDFI VPAKSGSPES RVNAIHFLVH 501 550 bmy_13637T0/1-588 ---------- --------SV CEHSKENLMT PSNMGVIFGP TLMRAQEDTV ENSP00000336923/1-786 KLPEKNKEML DILVKHLTNV SNHSKQNLMT VANLGVVFGP TLMRPQEETV ENSTTRP00000013693/1-734 KLPEKNKEML DILVKHLTNV SNHSKQNLMT VANLGVVFGP TLMRPQEETV ENSBTAP00000003283/1-785 KLPEKNKEML DILVKHLTNV SNHSKQNLMT VANLGVVFGP TLMRPQEETV BACU013561/1-683 KLPEKNKEML DILVKHLTNV SNHSKQNLMT VANLGVVFGP TLMRPQEETV 551 600 bmy_13637T0/1-588 AAMMNIKFQN IVVEILIEHF VKIYSGPPEE --------ST APPVPPPRVT ENSP00000336923/1-786 AALMDLKFQN IVVEILIENH EKIFRTPPDT TFPEPTCLSA SPPNAPPRQS ENSTTRP00000013693/1-734 AAIMDLKFQN IVVEILIENH EKIFRTLPDA TLPEPVTLSA SPPNAPPRQS ENSBTAP00000003283/1-785 AAIMDLKFQN IVVEILIENH EKIFRTPPDA TLPEPGPLS- APPNAPPRQS BACU013561/1-683 AAIMDLKFQN IVVEILIENH EKIFRTLPDA TLPDPVTLSA SPPNAPPRQS 601 650 bmy_13637T0/1-588 ARR----HKP ITISKRL--L RERTVFYTSS LDESEGDSDS FSIVRP---- ENSP00000336923/1-786 KRQGQRTKRP VAVYNLCLEL EDGDNPYPSK EDTPTSSLDS LSSPSPVTTA ENSTTRP00000013693/1-734 KRQGQRTKRP VAVYNLCLEL EDGDRPNLPK EDTPPSSLDS FSSPSPTAAA ENSBTAP00000003283/1-785 KRQGQRTKRP VAVYNLCLEL EDGDRPSLPK EDTPPSSLDS LSSPSPTTAT BACU013561/1-683 KRQGQRTKRP VAVYNLCLEL EDGDRPNLPK EDTPPSSLDS FSSPSPTAAA 651 700 bmy_13637T0/1-588 ----PG---- ---------- ---------- ---------- EKPTI--IRP ENSP00000336923/1-786 VPGPPGPDKN HLLADGGSFG DWASTIPGQT RSSMVQWLNP QSPTTTSSNS ENSTTRP00000013693/1-734 AHGPPGPDRN HLLADGDTFG DWASTAPGQA RSSTVQWLNP QSPATPSCNP ENSBTAP00000003283/1-785 ALGHPGPDRN HLLTDGGSFG DWAPTAPSQA RSSAVQWLNP QSPTTPSCSP BACU013561/1-683 AHGPPGPDKN HLLADGGTFG DWASTAPSQA RSSTVQWLNP QAPTTPSCNT 701 750 bmy_13637T0/1-588 PVRPPDP--- ---------- ---------- -------PCR A--------- ENSP00000336923/1-786 AVTPLSPGSS PFPFSPPATV ADKPPESIRS RKARAVYPCE AEHSSELSFE ENSTTRP00000013693/1-734 AATPPSPKLS SFPLSLPATV ADKPPESLIS RKARAVYPCE AEHSSELSFE ENSBTAP00000003283/1-785 AVTPPSPKLP PVPLSLPATV ADKPPESIIS RKARAVYPCE AEHSSELSFE BACU013561/1-683 AVTPPSPKLA SFPLSLPATV ADKPPESVIS RKARAVYPCE AEHSSELSFE 751 800 bmy_13637T0/1-588 --------TT TQKPEPKPDI MTGNAGEIPS SV---- ENSP00000336923/1-786 IGAIFEDVQT SREPGWLEGT LNGKRGLIPQ NYVKLL ENSTTRP00000013693/1-734 IGAIFEDVQT SREPGWLEGT LNGKRGLIPQ NYVKLL ENSBTAP00000003283/1-785 IGAIFEDVQT SREPGWLEGT LNGKRGLIPQ NYVKLL BACU013561/1-683 IGAIFEDVQT SREPGWLEGT LNGKRGLIPQ NYVKLL