KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:20:32 2014 Check: 00 ..
Name: ENSP00000156109/1-476 Len: 495 Check: 8496 Weight: 1.00
Name: ENSBTAP00000003325/1-480 Len: 495 Check: 4584 Weight: 1.00
Name: ENSTTRP00000008136/1-469 Len: 495 Check: 6376 Weight: 1.00
Name: bmy_16645T0/1-486 Len: 495 Check: 7165 Weight: 1.00
Name: BACU009770/1-477 Len: 495 Check: 9843 Weight: 1.00
//
1 50
ENSP00000156109/1-476 MADSKEGVLP LTAASTAPIS FGFTRTSARR RLADSGDGAG PSPEEKDFLK
ENSBTAP00000003325/1-480 MADAEDGVLR PAGSSTAPIS FSFNRTSARR WLA--GDAA- --PEEKDFLK
ENSTTRP00000008136/1-469 MADAKDGVLW PAGASSAPIS FTFSRTSARR WLA--GDAA- --P-EKDFLK
bmy_16645T0/1-486 MADAKDGVLR PAGAFSAPIS FSFNRTSARR RLA--GDAA- --P-EKDFLK
BACU009770/1-477 MADAKDGVLR PAGAFSAPIS FSFNRTSARR RLA--GDAA- --P-EKDFLK
51 100
ENSP00000156109/1-476 TVEGRELQSV KPQEAPKELV IPLIQNGHRR QPPARPPGPS TDTGALADGV
ENSBTAP00000003325/1-480 TVEGRELQSV KPSEAPKELV IPLIQNGHRR QPPTQAPGPS THTEVLMDGM
ENSTTRP00000008136/1-469 TEKRRELQSV QPSEAPKELV IPLIQHGHLR QPPTQAPGPS THTEVLVDGM
bmy_16645T0/1-486 TEKGRELQSV QPSEAPKELV IPLIQNGHLR QPPTQAPGPS THTEVLVDGM
BACU009770/1-477 TEKGRELQSV QPSEAPKELV IPLIQNGHLR QPPTQAPGPS THTEVLVDGM
101 150
ENSP00000156109/1-476 VSQAVKELIA ESKKSLEERE NAGVDPTLAI PMIQKGCTPS GEGADSEPRA
ENSBTAP00000003325/1-480 LSQAVKELIE ESKKSLEERE NTGVDPTLAI PMIQKGCTPN REGTDSEPQA
ENSTTRP00000008136/1-469 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIRKGCTPI GEGADSEPRA
bmy_16645T0/1-486 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIQKGCTPN GEGADSEPRA
BACU009770/1-477 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIQKGCTPN GEGADSEPQA
151 200
ENSP00000156109/1-476 ETVPEEANYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP
ENSBTAP00000003325/1-480 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFSQV VKPRVNSLRP
ENSTTRP00000008136/1-469 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVTSLRP
bmy_16645T0/1-486 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP
BACU009770/1-477 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP
201 250
ENSP00000156109/1-476 KGLGLGANLT EA--QALTPT GPSRMPRPDE EQEKDKEDQP QGLVPGGAVV
ENSBTAP00000003325/1-480 KGLGLGANLT EVQAQAQAPA SPYRLPRPDE EQEKDKEDQP KGLVPGGAVV
ENSTTRP00000008136/1-469 NGLGLGANMT EF--QALAPT GPHHLLRPDE EQEKDKEDQP QGLVPGGAVV
bmy_16645T0/1-486 RGLGLGANLT EV--QALAPT GPHHLLRPDE EPEKDKEDQP QGLAPGGAVA
BACU009770/1-477 RGLGLGANLT EV--QALAPT GPHHLLRPDE EPEKDKEDQP QGLAPGGAVA
251 300
ENSP00000156109/1-476 VLSGPHRGLY GKVEGLDPDN VRAMVRLAVG SRVVTVSEYY LRPVSQQEFD
ENSBTAP00000003325/1-480 VLSGPHRGLY GKVEGLDPDN VRAMVRLAVG SRMVTVSEYC LRPVSQKEFD
ENSTTRP00000008136/1-469 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRVVTVSEYC LRPVSQQEFD
bmy_16645T0/1-486 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRMVTVSEYC LRPVSQQEFD
BACU009770/1-477 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRMVTVSEYC LRPVSQQEFD
301 350
ENSP00000156109/1-476 KNTLD----- ---LRQQNGT ASSRKTLWNQ ELYIQQDNSE RKRKHLPDR-
ENSBTAP00000003325/1-480 KN-LNLSQVS RTSPGEHHRT TSPRKTLRDQ DSHICWEDAE RKRKHHPDR-
ENSTTRP00000008136/1-469 KNSLD----- ---LRQQNGT ASSWKALQDQ DLHVRQEDSA RKRKHHPDR-
bmy_16645T0/1-486 KNSLDPSQVS KASPRQQNGT TSSWKALQDQ DLHVRQEDSA RKRKHHPDRW
BACU009770/1-477 KNSLDPSQVS KTSPRQQNGT TSSWKALQHQ DLHVRQEDSA RKRKHHPDR-
351 400
ENSP00000156109/1-476 --------QD GPAAKSEKAA PRSQHWLHRD LRVRFVDNMY KGGQYYNTKM
ENSBTAP00000003325/1-480 --------QD GPATKNEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM
ENSTTRP00000008136/1-469 --------QD EPAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM
bmy_16645T0/1-486 DPEHLRWGQD APAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM
BACU009770/1-477 --------QD APAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM
401 450
ENSP00000156109/1-476 IIEDVLSPDT CVCRTDEGRV LEGLREDMLE TLVPKAEGDR VMVVLGPQTG
ENSBTAP00000003325/1-480 TIEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVPGDQ VMVVLGQWAG
ENSTTRP00000008136/1-469 TVEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGNR VMVVLGPWAG
bmy_16645T0/1-486 TIEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGNR VMVVLGPWAG
BACU009770/1-477 TMKDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGKR VMVVLGPWAG
451 500
ENSP00000156109/1-476 RVGHLLSRDR ARSRALVQLP RENQVVELHY DAICQYMGPS DTDDD
ENSBTAP00000003325/1-480 RVGRLLDRDR ARSRALVQLQ REDRVVELHY DAICQFVGLW DVEED
ENSTTRP00000008136/1-469 RVGRLLDRDR EQSRALVQLQ RENQVVELHY DAICQYMGPS DSED-
bmy_16645T0/1-486 RVGRLLDRDR EQSRALVQLQ RENRVVELHY DAICQYVGPS DSED-
BACU009770/1-477 RVGRLLDRDR EQSRALVQLQ RESRVVELHY DAICQYVGPS DSED-