KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:32 2014 Check: 00 .. Name: ENSP00000156109/1-476 Len: 495 Check: 8496 Weight: 1.00 Name: ENSBTAP00000003325/1-480 Len: 495 Check: 4584 Weight: 1.00 Name: ENSTTRP00000008136/1-469 Len: 495 Check: 6376 Weight: 1.00 Name: bmy_16645T0/1-486 Len: 495 Check: 7165 Weight: 1.00 Name: BACU009770/1-477 Len: 495 Check: 9843 Weight: 1.00 // 1 50 ENSP00000156109/1-476 MADSKEGVLP LTAASTAPIS FGFTRTSARR RLADSGDGAG PSPEEKDFLK ENSBTAP00000003325/1-480 MADAEDGVLR PAGSSTAPIS FSFNRTSARR WLA--GDAA- --PEEKDFLK ENSTTRP00000008136/1-469 MADAKDGVLW PAGASSAPIS FTFSRTSARR WLA--GDAA- --P-EKDFLK bmy_16645T0/1-486 MADAKDGVLR PAGAFSAPIS FSFNRTSARR RLA--GDAA- --P-EKDFLK BACU009770/1-477 MADAKDGVLR PAGAFSAPIS FSFNRTSARR RLA--GDAA- --P-EKDFLK 51 100 ENSP00000156109/1-476 TVEGRELQSV KPQEAPKELV IPLIQNGHRR QPPARPPGPS TDTGALADGV ENSBTAP00000003325/1-480 TVEGRELQSV KPSEAPKELV IPLIQNGHRR QPPTQAPGPS THTEVLMDGM ENSTTRP00000008136/1-469 TEKRRELQSV QPSEAPKELV IPLIQHGHLR QPPTQAPGPS THTEVLVDGM bmy_16645T0/1-486 TEKGRELQSV QPSEAPKELV IPLIQNGHLR QPPTQAPGPS THTEVLVDGM BACU009770/1-477 TEKGRELQSV QPSEAPKELV IPLIQNGHLR QPPTQAPGPS THTEVLVDGM 101 150 ENSP00000156109/1-476 VSQAVKELIA ESKKSLEERE NAGVDPTLAI PMIQKGCTPS GEGADSEPRA ENSBTAP00000003325/1-480 LSQAVKELIE ESKKSLEERE NTGVDPTLAI PMIQKGCTPN REGTDSEPQA ENSTTRP00000008136/1-469 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIRKGCTPI GEGADSEPRA bmy_16645T0/1-486 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIQKGCTPN GEGADSEPRA BACU009770/1-477 LSQAVKELIE ESTKSLEERE NAGVDPTLAI PMIQKGCTPN GEGADSEPQA 151 200 ENSP00000156109/1-476 ETVPEEANYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP ENSBTAP00000003325/1-480 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFSQV VKPRVNSLRP ENSTTRP00000008136/1-469 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVTSLRP bmy_16645T0/1-486 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP BACU009770/1-477 ETVPEEADYE AVPVEAYGLA MLRGMGWKPG EGIGRTFNQV VKPRVNSLRP 201 250 ENSP00000156109/1-476 KGLGLGANLT EA--QALTPT GPSRMPRPDE EQEKDKEDQP QGLVPGGAVV ENSBTAP00000003325/1-480 KGLGLGANLT EVQAQAQAPA SPYRLPRPDE EQEKDKEDQP KGLVPGGAVV ENSTTRP00000008136/1-469 NGLGLGANMT EF--QALAPT GPHHLLRPDE EQEKDKEDQP QGLVPGGAVV bmy_16645T0/1-486 RGLGLGANLT EV--QALAPT GPHHLLRPDE EPEKDKEDQP QGLAPGGAVA BACU009770/1-477 RGLGLGANLT EV--QALAPT GPHHLLRPDE EPEKDKEDQP QGLAPGGAVA 251 300 ENSP00000156109/1-476 VLSGPHRGLY GKVEGLDPDN VRAMVRLAVG SRVVTVSEYY LRPVSQQEFD ENSBTAP00000003325/1-480 VLSGPHRGLY GKVEGLDPDN VRAMVRLAVG SRMVTVSEYC LRPVSQKEFD ENSTTRP00000008136/1-469 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRVVTVSEYC LRPVSQQEFD bmy_16645T0/1-486 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRMVTVSEYC LRPVSQQEFD BACU009770/1-477 VLSGPHRGLY GKVEGLDPDN ARAMVRLAVG SRMVTVSEYC LRPVSQQEFD 301 350 ENSP00000156109/1-476 KNTLD----- ---LRQQNGT ASSRKTLWNQ ELYIQQDNSE RKRKHLPDR- ENSBTAP00000003325/1-480 KN-LNLSQVS RTSPGEHHRT TSPRKTLRDQ DSHICWEDAE RKRKHHPDR- ENSTTRP00000008136/1-469 KNSLD----- ---LRQQNGT ASSWKALQDQ DLHVRQEDSA RKRKHHPDR- bmy_16645T0/1-486 KNSLDPSQVS KASPRQQNGT TSSWKALQDQ DLHVRQEDSA RKRKHHPDRW BACU009770/1-477 KNSLDPSQVS KTSPRQQNGT TSSWKALQHQ DLHVRQEDSA RKRKHHPDR- 351 400 ENSP00000156109/1-476 --------QD GPAAKSEKAA PRSQHWLHRD LRVRFVDNMY KGGQYYNTKM ENSBTAP00000003325/1-480 --------QD GPATKNEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM ENSTTRP00000008136/1-469 --------QD EPAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM bmy_16645T0/1-486 DPEHLRWGQD APAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM BACU009770/1-477 --------QD APAAKSEKAA PRSQHWLHRD LRVRFVDKLH KGGQYYNTKM 401 450 ENSP00000156109/1-476 IIEDVLSPDT CVCRTDEGRV LEGLREDMLE TLVPKAEGDR VMVVLGPQTG ENSBTAP00000003325/1-480 TIEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVPGDQ VMVVLGQWAG ENSTTRP00000008136/1-469 TVEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGNR VMVVLGPWAG bmy_16645T0/1-486 TIEDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGNR VMVVLGPWAG BACU009770/1-477 TMKDVLSPDT CVCRTDEGQV LEGLREDMLE TLVPKVQGKR VMVVLGPWAG 451 500 ENSP00000156109/1-476 RVGHLLSRDR ARSRALVQLP RENQVVELHY DAICQYMGPS DTDDD ENSBTAP00000003325/1-480 RVGRLLDRDR ARSRALVQLQ REDRVVELHY DAICQFVGLW DVEED ENSTTRP00000008136/1-469 RVGRLLDRDR EQSRALVQLQ RENQVVELHY DAICQYMGPS DSED- bmy_16645T0/1-486 RVGRLLDRDR EQSRALVQLQ RENRVVELHY DAICQYVGPS DSED- BACU009770/1-477 RVGRLLDRDR EQSRALVQLQ RESRVVELHY DAICQYVGPS DSED-