KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:34 2014 Check: 00 .. Name: ENSTTRP00000003234/1-778 Len: 812 Check: 818 Weight: 1.00 Name: bmy_17995T0/1-454 Len: 812 Check: 617 Weight: 1.00 Name: ENSP00000294952/1-780 Len: 812 Check: 178 Weight: 1.00 Name: BACU013883/1-591 Len: 812 Check: 9962 Weight: 1.00 Name: ENSBTAP00000003332/1-780 Len: 812 Check: 4777 Weight: 1.00 // 1 50 ENSTTRP00000003234/1-778 ---------- ---------- ---------- --MASAELQG KYQKLAQEYS bmy_17995T0/1-454 GGTVPGSVSG VGGEGAGLSG LGHPGLDGAG EAMASAELQG KYQKLAQEYS ENSP00000294952/1-780 ---------- ---------- ---------- --MASAELQG KYQKLAQEYS BACU013883/1-591 ---------- ---------- ---------- --MASAELQG KYQKLAQEYS ENSBTAP00000003332/1-780 ---------- ---------- ---------- --MASAELQG KYQKLAQEYS 51 100 ENSTTRP00000003234/1-778 KLRAQNQVLK KGVVDEQANS AALKEQLKMK DQSLRKLQQE MDSLTFRNLQ bmy_17995T0/1-454 KLRAQNQVLK KGVVDEQANS AALKEQLKMK DQSLRKLQQE MDSLTFRNLQ ENSP00000294952/1-780 KLRAQNQVLK KGVVDEQANS AALKEQLKMK DQSLRKLQQE MDSLTFRNLQ BACU013883/1-591 KLRAQNQVLK KGVVDEQANS AALKEQLKMK DQSLRKLQQE MDSLTFRNLQ ENSBTAP00000003332/1-780 KLRAQNQVLK KGVVDEQANS AALKEQLKMK DQSLRKLQQE MDSLTFRNLQ 101 150 ENSTTRP00000003234/1-778 LAKRVELLQD ELALSEPRGK KNKKSGESSS QLSQEQK-VF DE-LQKKIEE bmy_17995T0/1-454 LAKRVELLQD ELALSEPRGK KNKKSGESSS QLSQEQKSVF DEDLQKKIEE ENSP00000294952/1-780 LAKRVELLQD ELALSEPRGK KNKKSGESSS QLSQEQKSVF DEDLQKKIEE BACU013883/1-591 LAKRVELLQD ELALSEPRGK KNKKSGESSS QLSQEQKSVF DEDLQKKIEE ENSBTAP00000003332/1-780 LAKRVELLQD ELALSEPRGK KNKKSGESSS QLSQEQKSVF DEDLQKKIEE 151 200 ENSTTRP00000003234/1-778 NERLHIQFFE ADEQHKHVEA ELRSRLATLE MEAAQHQAVV DGLTRKYMET bmy_17995T0/1-454 NERLHIQFFE ADEQHKHVEA ELRSRLATLE TEAAQHQAVV DGLTRKYMET ENSP00000294952/1-780 NERLHIQFFE ADEQHKHVEA ELRSRLATLE TEAAQHQAVV DGLTRKYMET BACU013883/1-591 NERLHIQFFE ADEQHKHVEA ELRSRLATLE METAQHQAVV DGLTRKYMET ENSBTAP00000003332/1-780 NERLHIQFFE ADEQHKHVEA ELRSRLSTLE MEAAQHQAVV DGLTRKYMET 201 250 ENSTTRP00000003234/1-778 IEKLQNDKAK LEVKSQTLEK EAKECRLRTE ECQLQLKNLH EDLSSRLEES bmy_17995T0/1-454 IEKLQNDKAK LEGIPDV--- ---------- -SQLQLKNLH EDLSSRLEES ENSP00000294952/1-780 IEKLQNDKAK LEVKSQTLEK EAKECRLRTE ECQLQLKTLH EDLSGRLEES BACU013883/1-591 IEKLQNDKAK LEVKSQTLEK EAKECRLRTE ECQLQLKNLH EDLSSRLEES ENSBTAP00000003332/1-780 IEKLQNDKAK LEVKSQTLEK EAKECRLRTE ECQLQLKNLH EDLSSRLEES 251 300 ENSTTRP00000003234/1-778 LSIINEKVPF NDTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17995T0/1-454 LSIISEKVPF NDTKYSRYNA LNVPVHNRRH QLKMRDIAGQ ALAFVQDLVK ENSP00000294952/1-780 LSIINEKVPF NDTKYSQYNA LNVPLHNRRH QLKMRDIAGQ ALAFVQDLVT BACU013883/1-591 LSIISEKVPF NDTKYSRYNA LNVPVHNRRH QLKMRDIAGQ ALAFVQDLVK ENSBTAP00000003332/1-780 LSIISEKVPF NDTKYSQYNA LNVPVHNRRH QLKMRDIAGQ ALAFVQDLVK 301 350 ENSTTRP00000003234/1-778 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFSQYLHENA SYVRPLEEGM bmy_17995T0/1-454 GLLNFHTYTE QRIQIFPVDS AIDTISPLNQ KFSQYLHENA SYVRPLEEGM ENSP00000294952/1-780 ALLNFHTYTE QRIQIFPVDS AIDTISPLNQ KFSQYLHENA SYVRPLEEGM BACU013883/1-591 GLLNFHTYTE QRIQIFPVDS AIDTISPLNQ KFSQYLHENA SYVRPLEEGM ENSBTAP00000003332/1-780 ALLNFHTYTE QRIQIFPIDS AIDTISPLNQ KFSQYLHENA SYVRPLEEGM 351 400 ENSTTRP00000003234/1-778 LHLFESITED TVTVLETTVK LKTFSEHLTS YICFLRKILP YQLKSLEEEC bmy_17995T0/1-454 LHLFESITED TVTVLETTVK LKTFSEHLTS YICFLRKILP YQLKSLEEEC ENSP00000294952/1-780 LHLFESITED TVTVLETTVK LKTFSEHLTS YICFLRKILP YQLKSLEEEC BACU013883/1-591 LHLFESITED TVTVLETTVK LKTFSEHLTS YICFLRKILP YQLKSLEEEC ENSBTAP00000003332/1-780 LHLFESITED TVTVLETTVK LKTFSEHLTS YICFLRKILP YQLKSLEEEC 401 450 ENSTTRP00000003234/1-778 EASLCTSALR ARNLELSQDM KKMTAVFEKL QTYIGLLALP STEPDGLLRT bmy_17995T0/1-454 EASLCTSALR ARNLELSQDM KKMTAVFEKL QTYIGLLALP SK------RV ENSP00000294952/1-780 ESSLCTSALR ARNLELSQDM KKMTAVFEKL QTYIALLALP STEPDGLLRT BACU013883/1-591 EASLCTSALR ARNLELSQDM KKMTAVFEKL QTYIGLLALP STEPDGLLRT ENSBTAP00000003332/1-780 EASLCTSALR ARNLELSQDM KKMTAVFEKL QTYIALLALP STEPDGLLRT 451 500 ENSTTRP00000003234/1-778 NYSSVLTNVG AALHGFHDVM KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17995T0/1-454 CYS------- ---------- ---------- ---------- ---------- ENSP00000294952/1-780 NYSSVLTNVG AALHGFHDVM KDISKHYSQK AAIEHELPTA TQKLITTNDC BACU013883/1-591 NYSSVLINVG AALHGFHDVM KDISKHYSQK ATIEHELPTA TQKLITTNDC ENSBTAP00000003332/1-780 NYSCVLTNVG AALHGFHDVM KDISKHYSQK ATIELELPTT TQKLITTNDC 501 550 ENSTTRP00000003234/1-778 XXXXXXXXXX XXXXIASFFS NNVDYFIASL SYGPKTASGF ISPLSAECML bmy_17995T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000294952/1-780 ILSSVVALTN GAGKIASFFS NNLDYFIASL SYGPKAASGF ISPLSAECML BACU013883/1-591 ILSSVVALTN GAGKIASFFS NNVDYFIASL SYGPKAASGF ISPLSAECML ENSBTAP00000003332/1-780 ILSSVVALTN GAGKIASFFS NNVDYFIASL SYGPKTGSGF ISPLSAECML 551 600 ENSTTRP00000003234/1-778 QYKKKAAAYM KALRKPLLES VPYEEALANR RVLLSSTESR EGLAQQVQQS bmy_17995T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000294952/1-780 QYKKKAAAYM KSLRKPLLES VPYEEALANR RILLSSTESR EGLAQQVQQS BACU013883/1-591 QYKKKAAAYM KALRKPLLES VPYEEALANR RVLLSSTESR EGLAQQLCR- ENSBTAP00000003332/1-780 QYKKKAAAYM KALRKPLLES VPYEEALANR RVLLSSTESR EGLAQQVQQS 601 650 ENSTTRP00000003234/1-778 LEKISKLEQE KEHWMLEAQL AKIKLEKENQ RTADKLKSTS SGQVVGVAQE bmy_17995T0/1-454 ---------- ---WFNLKNL EYKKLEEGG- ---------- -----GLA-- ENSP00000294952/1-780 LEKISKLEQE KEHWMLEAQL AKIKLEKENQ RIADKLKNTG SAQLVGLAQE BACU013883/1-591 ---------- ---WSSCWDF KFSSLRREN- ---------- ---------- ENSBTAP00000003332/1-780 LEKISKLEQE KEHWMLEAQL AKIKLEKENQ RIADKLKSTS SGQVVGVAQE 651 700 ENSTTRP00000003234/1-778 GAAVVTAAGQ EDASAKAVPV PVHSTSLIGI LTRTSDSEAP DVESREDLIR bmy_17995T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000294952/1-780 NAAVSNTAGQ DEATAKAVLE PIQSTSLIGT LTRTSDSEVP DVESREDLIK BACU013883/1-591 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003332/1-780 KAAVATATGQ EEASAKAVPE PVHSTSEIGI LTRTSDSEAP DVESREDLIR 701 750 ENSTTRP00000003234/1-778 NHYMARIVEL TSQLQLADSK SVHFYAECRA LSKRLALAEK SKEALAEEMK bmy_17995T0/1-454 ---------- ---------- -------CR- ---------- ---------- ENSP00000294952/1-780 NHYMARIVEL TSQLQLADSK SVHFYAECRA LSKRLALAEK SKEALTEEMK BACU013883/1-591 ---------- ---------- -------CR- ---------- ---------- ENSBTAP00000003332/1-780 NHYMTRIVEL TSQLQLADSK SVHFYAECRA LSKRLALAEK SKEALTEEMK 751 800 ENSTTRP00000003234/1-778 AASQNNSRLQ DELTTTKRSY EDQLSMMSDH LCSMNETLSK QREEIDTLKM bmy_17995T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSP00000294952/1-780 LASQNISRLQ DELTTTKRSY EDQLSMMSDH LCSMNETLSK QREEIDTLKM BACU013883/1-591 ----TVRRLQ ---------- ---------- ---------- ---------- ENSBTAP00000003332/1-780 VASQSISRLQ DELTTTKRSY EDQLSMMSDH LCSMNETLSK QREEIDTLKM 801 850 ENSTTRP00000003234/1-778 SSKGNSKKNK SR bmy_17995T0/1-454 ---------- -- ENSP00000294952/1-780 SSKGNSKKNK SR BACU013883/1-591 ---------- -- ENSBTAP00000003332/1-780 SSKGNSKKNK SR