KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:35 2014 Check: 00 .. Name: ENSP00000335196/1-551 Len: 600 Check: 6080 Weight: 1.00 Name: ENSBTAP00000003336/1-551 Len: 600 Check: 1939 Weight: 1.00 Name: BACU003198/1-588 Len: 600 Check: 1280 Weight: 1.00 Name: ENSTTRP00000007298/1-545 Len: 600 Check: 8363 Weight: 1.00 Name: bmy_20696T0/1-382 Len: 600 Check: 968 Weight: 1.00 // 1 50 ENSP00000335196/1-551 MARGAEGGRG DAGWGLRGAL AAVALLSALN AAGTVFALCQ WRGLSSALRA ENSBTAP00000003336/1-551 MAGGAERGRG GAGWGLRGAL AAVALLSALN AAGTVFALCQ WRGLSAALRA BACU003198/1-588 MAGSAERGRG GAGWGLRGAL AAVALLSALN AAGTVFALCQ WRGLSAALRA ENSTTRP00000007298/1-545 MAGGAERGRG -AGWG-RGAL AAV-LLSALN AVGTVFALCQ WRGLSAALRA bmy_20696T0/1-382 -----MASDG SAEYS----- ---------- -----SALC- ---------- 51 100 ENSP00000335196/1-551 LEAQRGREQR EDSALRSFLA ELSRAPRGAS APPQDPASSA RNKRSHSGEP ENSBTAP00000003336/1-551 LEEQRGREQR EDSALRAFLA ELSRAPRRAP APPLDPASAA RNKRSHGGEP BACU003198/1-588 LEAQRGREQR EDSDLRAFLT ELSHAPRRAP APPLDPVSAA RNKRSHGGEP ENSTTRP00000007298/1-545 LEAQCGREQR EDSALRAFLA ELSHAPRRAP APPPDPVSAA RNKRSHGGEP bmy_20696T0/1-382 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000335196/1-551 APHIRAESHD MLMMMTYSMV P--------- ---------- ---------- ENSBTAP00000003336/1-551 AQHIRAESHD MLMMMTYSMV P--------- ---------- ---------- BACU003198/1-588 AQHIRAESHD MLLMMTYSMV PTSSEVFDEY LFTHKMHPQL SKGKYRLRAS ENSTTRP00000007298/1-545 AQHIRAESHD MLLMMTYSMV P--------- ---------- ---------- bmy_20696T0/1-382 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000335196/1-551 ---------- -------IRV MVDLCNSTKG ICLTGPSGPP GPPGAGGLPG ENSBTAP00000003336/1-551 ---------- -------IRV MVDLCNSTRG ICLTGPPGPA GPPGASGLPG BACU003198/1-588 SGSTAYHTAI NGPLFLQIRV MVDLCNSTRG ICLT------ GPPGIGGLPG ENSTTRP00000007298/1-545 ---------- -------IRV MVDLCNSTRG ICLTGPPGPA GPPGIGGLPG bmy_20696T0/1-382 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000335196/1-551 HNGLDGQPGP QGPKGEKGAN GKRGKMGIPG AAGNPGERGE KGDHGELGLQ ENSBTAP00000003336/1-551 HNGSDGQPGP QGPKGEKGAN GKRGKMGPPG ATGTP---GE KGDPGELGLP BACU003198/1-588 HNGSDGQPGP QGPKGEKGAN GKRGKMGPPG ATGTP---GE KGDPGELGLT ENSTTRP00000007298/1-545 HNGSDGRPGP QGPKGEKGAN GKRGKMGPPG ATGTP---GE KGDPGELGLT bmy_20696T0/1-382 ---------- ---------- ------GPPG ATGTP---GE KGDPGELGLT 251 300 ENSP00000335196/1-551 GNEGPPGQKG EKGDKGDVSN DVLLAGAKGD QGPPGPPGP- --PGPPGPPG ENSBTAP00000003336/1-551 GSEGQAGQKG DKGDKGDVPN DVLPAGAKGD QGPPGPPGPP GPPGPPGPPG BACU003198/1-588 GNEGPAGQKG DKGDKGDVSN DVLPSGAKGD QGPPGPPGP- --PGPPGPPG ENSTTRP00000007298/1-545 GNEGPAGQKG DKGDKGDVSN DVLPSGAKGD QGPPGPPGP- --PGPPGPPG bmy_20696T0/1-382 GNEGPAGQKG DKGDKGDVSN DVLPSGAKGD QGPPGPPGP- --PGPPGPPG 301 350 ENSP00000335196/1-551 PPGSRRAKGP RQPSMFNGQC PGETCAIPND DTLVGKADEK ASEHHSPQAE ENSBTAP00000003336/1-551 PPGSRRSKGP RQPNMFNGQC PGETCAVPND DTLVGKTDEK VSEHHSPQIE BACU003198/1-588 PPGSRRSKGP RQPNMFNGQC PGETCAVPND DTLVGKADEK VSEHHSLQAE ENSTTRP00000007298/1-545 PPGSRRSKGP RQPNMFNGQC PGETCAVPND DTLVGKADEK VSEHHSLQAE bmy_20696T0/1-382 PPGSRRSKGP RQPNMFNGQC PGETCAVPND DTLVGKADEK VSEHHSLQAE 351 400 ENSP00000335196/1-551 SMITSIGNPV QVLKVTETFG TWIRESANKS DDRIWVTEHF SGIMVKEFKD ENSBTAP00000003336/1-551 SMITSIGSPI QVLKVKETFG TWIRESANKS DERIWVTEHF SGIRVKEFED BACU003198/1-588 SMITSIGNPT QVLKVKETFG TWIRESANKS DERIWVTEHF SGLRVKEFQD ENSTTRP00000007298/1-545 SMITSIGNPT QVLKVKETFG TWIRESANKS DERIWVTEHF SGLRVKEFQD bmy_20696T0/1-382 SMITSIGNPT QVLKVKETFG TWIRESANKS DERIWVTEHF SGLRVKEFQD 401 450 ENSP00000335196/1-551 QPSLLNGSYT FIHLPYYFHG CGHVVYNNSL YYHKGGSNTL VRFEFGQETS ENSBTAP00000003336/1-551 QPSLLNGSYT LIHLPYYFHG CGHTVHNNSL YYHKGGSNTI VRFEFGKETS BACU003198/1-588 QTSLLNGSYT LIHLPYYFHG CGHTVHNNSL YYHKGGSNTI VRFEFGKETS ENSTTRP00000007298/1-545 QPSLLNGSYT LIHLPHYFHG CGHTVHNNSL YYHKGGSNTI VRFEFGKETS bmy_20696T0/1-382 QTSLLNGSYT LIHLPYYFHG CGHTVHNNSL YYHKGGSNTI VRFEFGKETS 451 500 ENSP00000335196/1-551 QTLKLENALY FDRKYLFANS KTYFNLAVDE KGLWIIYASS VDGSSILVAQ ENSBTAP00000003336/1-551 QTLKLENALY FDRKYLFANS KTYFNLAVDE KGLWIIYASS VDGSSILVAQ BACU003198/1-588 QTLKLENALY FDRKYLFANS KTYFNLAVDE KGLWIIYASS VDGSSILVAQ ENSTTRP00000007298/1-545 QTLKLENALY FDRKYLFANS KTYFNLAVDE KGLWIIYASS VDGSSILVAQ bmy_20696T0/1-382 QTLKLENALY FDRKYLFANS KTYFNLAVDE KGLWIIYASS VDGSSILVAQ 501 550 ENSP00000335196/1-551 LDERTFSVVQ HVNTTYPKSK AGNAFIARGI LYVTDTKDMR VTFAFDLLGG ENSBTAP00000003336/1-551 LEERTFSVVQ HINTTYPKSK AGNAFIARGI LYVTDTKDTR ITFAFDLLGG BACU003198/1-588 LNERTFSVVQ HINTTYPKSK AGNAFIARGI LYVTDTKDMR ITFAFDLLGG ENSTTRP00000007298/1-545 LDERTFSVVQ HINTTYPKSK AGNAFIARGI LYVTDTKDMR ITFAFDLLGG bmy_20696T0/1-382 LNERTFSVVQ HINTTYPKSK AGNAFIARGI LYVTDTKDMR ITFAFDLLGG 551 600 ENSP00000335196/1-551 KQINANFDLR TSQSVLAMLA YNMRDQHLYS WEDGHLMLYP VQFLSTTLNQ ENSBTAP00000003336/1-551 KQINANFALR TSQSVLAMLS YNMRDQHLYS WEDGHLMLYP VQFLSAALHQ BACU003198/1-588 KQINANFDLR TSPSVLAMLS YNMRDQNLYS WEDGHLMLYP VQFLSATLNQ ENSTTRP00000007298/1-545 KQINANFDLR TSPSVLAMLS YNMRDQNLYS WEDGHLMLYP VQFLSATLNQ bmy_20696T0/1-382 KQINANFDLR TSPSVLAMLS YNMRDQNLYS WEDGHLMLYP VQFLSATLNQ