KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:40 2014 Check: 00 .. Name: ENSTTRP00000008151/1-279 Len: 323 Check: 9193 Weight: 1.00 Name: ENSP00000296218/1-280 Len: 323 Check: 3633 Weight: 1.00 Name: ENSBTAP00000003346/1-293 Len: 323 Check: 5847 Weight: 1.00 Name: bmy_02125T0/1-288 Len: 323 Check: 8920 Weight: 1.00 Name: BACU009685/1-288 Len: 323 Check: 8821 Weight: 1.00 // 1 50 ENSTTRP00000008151/1-279 ---------- ---MATANKA LTG-GRSRAT TPAAAMIPPA DSLLKYDTPV ENSP00000296218/1-280 ---------- ---MVTANKA HTGQGSCWVA TLASAMIPPA DSLLKYDTPV ENSBTAP00000003346/1-293 MTDLPPGLPL PAARSPRSPC SGDNGVCWVA SPAATMIPPA DSLLKYDTPV bmy_02125T0/1-288 ---------- ---------- ---------- -----MIPPA DSLLKYDTPV BACU009685/1-288 ---------- ---------- ---------- -----MIPPA DSLLKYDTPV 51 100 ENSTTRP00000008151/1-279 LVSRNKEKRS PKARPLKVSP QQPGPSGPVP QPPKTKLPST SGVPDPTKQA ENSP00000296218/1-280 LVSRNTEKRS PKARLLKVSP QQPGPSGSAP QPPKTKLPST PCVPDPTKQA ENSBTAP00000003346/1-293 LVSRNTEKRS PKARPLKVSP QQPGPSGPVP QPPKTKLPST SCVPDPTKQA bmy_02125T0/1-288 LVSRNREKRS PKARPLKVSP QQPGPSGPVP QPPKTKLPST SCVPDPTKQA BACU009685/1-288 LVSRNREKRS PKARPLKVSP QQPGPSGPVP QPPKTKLPST SCVPDPTKQA 101 150 ENSTTRP00000008151/1-279 EEILNAILPP REWVEDTQLW IQQVSSAPST RMDVVHLQEQ LDLKLQQRQA ENSP00000296218/1-280 EEILNAILPP REWVEDTQLW IQQVSSTPST RMDVVHLQEQ LDLKLQQRQA ENSBTAP00000003346/1-293 EEILNAILPP REWVEDTQLW IQQVSSTPST RMDVVHLQEQ LDLKLQQRQA bmy_02125T0/1-288 EEILNAILPP REWVEDTQLW IQQVSSTPST RMDVVHLQEQ LDLKLQQRQA BACU009685/1-288 EEILNAILPP REWVEDTQLW IQQVSSTPST RMDVVHLQEQ LDLKLQQRQA 151 200 ENSTTRP00000008151/1-279 RETGICPVRR ELYSQCFDEL IREVTISCAE RGLLLLRVRD EIRMTIAAYQ ENSP00000296218/1-280 RETGICPVRR ELYSQCFDEL IREVTINCAE RGLLLLRVRD EIRMTIAAYQ ENSBTAP00000003346/1-293 RETGICPVRR ELYSQCFDEL IREVTINCAE RGLLLLRVRD EIRMTIAAYQ bmy_02125T0/1-288 RETGICPVRR ELYSQCFDEL IREVTINCAE RGLLLLRVRD EIRMTIAAYQ BACU009685/1-288 RETGICPVRR ELYSQCFDEL IREVTINCAE RGLLLLRVRD EIRMTIAAYQ 201 250 ENSTTRP00000008151/1-279 TLYESSVAFG MRKALQAEQG KSDMEKKIAE LETEKRDLER QVNEQKAKCE ENSP00000296218/1-280 TLYESSVAFG MRKALQAEQG KSDMERKIAE LETEKRDLER QVNEQKAKCE ENSBTAP00000003346/1-293 TLYESSVAFG MRKALQAEQG KSDMERKIAE LETEKRDLER QVNEQKAKCE bmy_02125T0/1-288 TLYESSVAFG MRKALQAEQG KSDMERKITE LETEKRDLER QVNEQKAKCE BACU009685/1-288 TLYESSVAFG MRKALQAEQG KSDMERKIAE LETEKRDLER QVNEQKAKGE 251 300 ENSTTRP00000008151/1-279 AIEKRESERR QVEETKHKEE IQFLKRTNQQ LK-----AQL EGIIAP---- ENSP00000296218/1-280 ATEKRESERR QVEEKKHNEE IQFLKRTNQQ LK-----AQL EGIIAP---- ENSBTAP00000003346/1-293 AVEKRESERR QVEEKKHNEE IQFLKRTNQQ LK-----AQL EGIIAP---- bmy_02125T0/1-288 AIEKRESERR QVDEKQHSEE IQFLKRTNQQ LKVIDAQAQV ELLPPPSPPP BACU009685/1-288 AIEKRESERR QVEEKRHNEE IQFLKRTNQQ LKVIDAQAQV ELLPPPSPPP 301 350 ENSTTRP00000008151/1-279 ---------- ---------- -KK ENSP00000296218/1-280 ---------- ---------- -KK ENSBTAP00000003346/1-293 ---------- ---------- -KK bmy_02125T0/1-288 ALPAKQAKHL VPCPPLTFNT DKE BACU009685/1-288 ALPAKQAKHL VPCPTLTFNT AKE