KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:40 2014 Check: 00 .. Name: ENSTTRP00000002832/1-618 Len: 896 Check: 7527 Weight: 1.00 Name: bmy_16069T0/1-818 Len: 896 Check: 9339 Weight: 1.00 Name: BACU007555/1-601 Len: 896 Check: 7059 Weight: 1.00 Name: ENSP00000280665/1-617 Len: 896 Check: 2251 Weight: 1.00 Name: ENSBTAP00000003353/1-581 Len: 896 Check: 3140 Weight: 1.00 // 1 50 ENSTTRP00000002832/1-618 --MAAAAGYP AGKGRDMSLA ALRRHDPYIS RIVDVASQVA LYTFGHRANE bmy_16069T0/1-818 ------MAGP RALRASLLVP SRRS-----A RLCPVSGDGD PSKFENARTT BACU007555/1-601 MAAAAAAGYP AGKGRDISLA ALRRHDPYIS RIVDVASQVA LYTFGHRANE ENSP00000280665/1-617 -MAAVAAGGL VGKGRDISLA ALQRHDPYIN RIVDVASQVA LYTFGHRANE ENSBTAP00000003353/1-581 ---MAVAGGP AGKGRDISLA ALRRHDPYIS RIVDVASQVA LYTFGHRANE 51 100 ENSTTRP00000002832/1-618 WEKTDVEGTL FVY------- -TRSASPKHG FTIMNRLSME NR-TEPITKD bmy_16069T0/1-818 PPSPVLFNLV FFFLPCGARC PPRPASPRGR PGKLGSRRFR DKWSGPKEIS BACU007555/1-601 WEKTDVEGTL FVY------- -TRSASPKHG FTIMNRLSME NR-TEPITKD ENSP00000280665/1-617 WEKTDVEGTL FVY------- -TRSASPKHG FTIMNRLSME NR-TEPITKD ENSBTAP00000003353/1-581 WEKTDVEGTL FVY------- -TRSASPKHG FTIMNRLSME NR-TEPITKD 101 150 ENSTTRP00000002832/1-618 LDFQLQDPFL LYRN-ARLSI YGIWFYDKEE CQRIAELMKN LTQYEQLKAH bmy_16069T0/1-818 TMSHFEDAHN WFDMFFAVSI YGIWFYDKEE CQRIAELMKN LAQHEQLKAH BACU007555/1-601 LDFQLQDPFL LYRN-ARLSI YGIWFYDKEE CQRIAELMKN LAQYEQLKAH ENSP00000280665/1-617 LDFQLQDPFL LYRN-ARLSI YGIWFYDKEE CQRIAELMKN LTQYEQLKAH ENSBTAP00000003353/1-581 LDFLLQDPFL LYRN-ARLSI YGIWFYDKEE CQRIAELMKN LTQYEQLKAH 151 200 ENSTTRP00000002832/1-618 HGAGAAVGAS PVGLGSGDRK EVDILRMLTK ARDEYAKCKA CPEPKQISSS bmy_16069T0/1-818 HGAA--VGAS PVSLSSGEGK EADILRMLTK AKDEYTKCKA CPEPKQISSS BACU007555/1-601 RGVV--VGAS PVSLSLGEGK EADILRMLSK AKDEYTKCKA CPEPKQISSS ENSP00000280665/1-617 QGTG--AGIS PVILNSGEGK EVDILRMLIK AKDEYTKCKT CSEPKKITSS ENSBTAP00000003353/1-581 HGTG--AGAS PVSLGSGEGK EADILRMLTK AKDEYTKCKT CSEPKQISSS 201 250 ENSTTRP00000002832/1-618 SAIYDNPNLI KPIPVKPSGS RQQQGPRPGQ XXXXXXXXXX XXXXXXXXXX bmy_16069T0/1-818 SAIYDNPNLI KPIPVKPSGS RQQRGPRPGQ TLDPEPQHLS LTALFGKQDK BACU007555/1-601 SAIYDNPNLI KPIPVKPSGS RQQRGPRPGQ TLDPEPQHLS LTALFGKQDK ENSP00000280665/1-617 SAIYDNPNLI KPIPVKPSEN QQQRIPQPNQ TLDPEPQHLS LTALFGKQDK ENSBTAP00000003353/1-581 SAIHDNPNLI KPIPVKPSGS RQQRGPRPGQ TSDPEPQHLS LTALFGKQDK 251 300 ENSTTRP00000002832/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16069T0/1-818 ATCQEAAGPP KTL------H QQQQEKLPIR QGVVRSLSYE EPRRRSPPVD BACU007555/1-601 ATCQEAAGPP KTL------H QQQQEKLPIR QGVVRSLSYE EPRRRSPPVD ENSP00000280665/1-617 ATCQETVEPP QTLHQQQQQQ QQQQEKLPIR QGVVRSLSYE EPRRHSPPIE ENSBTAP00000003353/1-581 APCQEATGPP QTL----PLQ QQQPEKFPMR QGVVRSLSYE EPRRPSPPVD 301 350 ENSTTRP00000002832/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16069T0/1-818 KQLCPAIQKL LVGSADLQPL AELPESWPCR D--------- ---AARPGSP BACU007555/1-601 RQLCPAIQKL LVGSADLQPL AELPESWPCR D--------- ---PARPGSP ENSP00000280665/1-617 KQLCPAIQKL MVRSADLHPL SELPENRPCE NGSTHSAGEF FTGPVQPGSP ENSBTAP00000003353/1-581 KQLCPAIQKL MVRSMDLQPL AELPESRPCT DALRAAC--- -AGPAQTGSP 351 400 ENSTTRP00000002832/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ bmy_16069T0/1-818 RGPEVSRRAH GAPRTQNAPD QLQSIPG--- -----APAPA ASAA------ BACU007555/1-601 RGPEVSRRAH DGRPPARLQE WPQGCPR--- --DPSTESQE VGGT------ ENSP00000280665/1-617 HNIGTSRGVQ NASRTQNLFE KLQSTPGAAN KCDPSTPAPA SSAALNRSRA ENSBTAP00000003353/1-581 RSHALA---- -APGTQKLLQ -VQSIPGAEN RCEPGAPAPA SSAT------ 401 450 ENSTTRP00000002832/1-618 ---------- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16069T0/1-818 ---------- ---------- ---TLPPQTP GPRA------ -LPRPAPPGP BACU007555/1-601 ---------- ---VPPPR-- ----ARPAAP GEGAGSGRWG PSRRKLGAAA ENSP00000280665/1-617 PTSVTPVAPG KGLAQPPQAY FNGSLPPQTV GHQAHGREQS TLPRQTLPIS ENSBTAP00000003353/1-581 ----TPVS-- --LAQPTR-- LSSALPPQTP GPRA------ -LPRPAPPGP 451 500 ENSTTRP00000002832/1-618 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16069T0/1-818 GPGRRPP-GP SEVSPRELLW KLQEVQQAQQ LPAPGRPALA AKFPVATPSA BACU007555/1-601 GQGRRRT--- ---APAERLG SWPVSPGDDR KPEKGGAAQS ASFACHGDHS ENSP00000280665/1-617 GS---QTGSS GVISPQELLK KLQIVQQEQQ LHASNRPALA AKFPVLAQSS ENSBTAP00000003353/1-581 GPGHQPVTGP GEVSPRELLR RLQAVQQEQQ LPAPGRPALA AKFPTATLST 501 550 ENSTTRP00000002832/1-618 XXXXXXXXXX XXX------- ---------- ---------- ---------- bmy_16069T0/1-818 RA--QDPLES WRGQTPSAEQ QVPLHQVGAA GREVLPGRGV GGTFACRPRA BACU007555/1-601 RDSRRRPPVP WREE------ ---------- ---------- ---------- ENSP00000280665/1-617 GT--GKPLES WIN------- ---------- ---------- ---------- ENSBTAP00000003353/1-581 RA--RNPLEP WRD------- ---------- ---------- ---------- 551 600 ENSTTRP00000002832/1-618 ---------- ---------- ---------- ---------- ---------- bmy_16069T0/1-818 SAPPRLRIAS PPSPPACKGE ANSSALPSHL SWGQVRGGCK RQVGQLSPAQ BACU007555/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000280665/1-617 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003353/1-581 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000002832/1-618 ---------- ---------- ---------- ---------- ---------- bmy_16069T0/1-818 LETLLGPLVL DLVAKTGGQT RPDGWPPARL QEWPQGCPRD PSMESQEVGW BACU007555/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000280665/1-617 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003353/1-581 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000002832/1-618 ---------- ---------- ---------- ---------- ---------- bmy_16069T0/1-818 TVTPPPARPA APGEGAGSGR WVPHGGSSGP QPGRDADGQP RRKGWGPGLC BACU007555/1-601 ---------- ---------- ---------- ---------- ---------- ENSP00000280665/1-617 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003353/1-581 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000002832/1-618 ---------- ---------- ---------- ---------- ---------- bmy_16069T0/1-818 PQAMTGSRRK EVLLRARALP ATGSIVRTEA PATGALEGGA GRWRLASRRP BACU007555/1-601 ---------- ---------- ---------- ---------- ---RAGGGWP ENSP00000280665/1-617 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003353/1-581 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000002832/1-618 ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXVLS PRRAPPAAGP bmy_16069T0/1-818 QPWTVSTEPA VSSAPSAPAP CASPPHPPAR RPVSHPQVLS PRRAPPAAGL BACU007555/1-601 PRARINTEPA VSSAPSAPAP CMSRPHPPAR RPVSHPQVLS PRRAPPAAGL ENSP00000280665/1-617 ---------- ---------- ----KTPNTE QQTPLFQVIS PQRIPATAAP ENSBTAP00000003353/1-581 ---------- ---------- ----PPPSTE QPAPLLQVLS PQRIPAAATP 801 850 ENSTTRP00000002832/1-618 SPLMSPLVFA QPPWAPPPER GSGLLPPGSQ DPAATPSGPL LPLWTPEPPR bmy_16069T0/1-818 SPLMSPLVFA QPPWAPPPER GSGLLPPGSQ DPAATPSGPL LPLRTPEPPR BACU007555/1-601 SPLMSPLVFT QPPWAPPPER GSGLLPPGSQ DPAATPSGPL LPLRTPEPPR ENSP00000280665/1-617 SLLMSPMVFA QPTSVPPKER ESGLLPVGGQ EPPAAATSLL LPIQSPEPSV ENSBTAP00000003353/1-581 PPLMSPLVFA QPSWAPPQER SRAPLPPGNQ DPAATPTGLL LPLRTPEPPG 851 900 ENSTTRP00000002832/1-618 TPGSALTKPQ LQEALLHLIQ NDDNFLNIIY EAYLFSMTQA AVKKTL bmy_16069T0/1-818 TPGSALTKPQ LQEALLHLVQ NDDNFLNIIY EAYLFSMTQA AMKKTL BACU007555/1-601 TPGSALTKPQ LQEALLHLVQ NDDNFLNIIY EAYLFSMTQA AMKKTL ENSP00000280665/1-617 ITSSPLTKLQ LQEALLYLIQ NDDNFLNIIY EAYLFSMTQA AMKKTM ENSBTAP00000003353/1-581 TPGSALSKLQ LQEALLHLIQ NDDNFLNIIY EAYLFSLTQA AVKKTL