KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:20:41 2014 Check: 00 .. Name: ENSBTAP00000003354/1-890 Len: 1192 Check: 6264 Weight: 1.00 Name: BACU002982/1-1139 Len: 1192 Check: 8221 Weight: 1.00 Name: bmy_20130T0/1-1001 Len: 1192 Check: 7230 Weight: 1.00 Name: ENSTTRP00000001240/1-886 Len: 1192 Check: 5742 Weight: 1.00 // 1 50 ENSBTAP00000003354/1-890 MAPPSARESK AQSATTAAKS DGEMVLPGFP DADSFVKFAL GAVVAVTKAS BACU002982/1-1139 MAPPGPRESK AQSATSATKS DGEMVLPGFP DADSFVKFAL GAVVAVTKAS bmy_20130T0/1-1001 MAPPGPRESK AQSATSATKS DGEMVLPGFP DADSFVKFAL GAVMAVTKAS ENSTTRP00000001240/1-886 MALPSSRESK ARSATSATES DGEMVLPGFP DADSFVKFAL GAVVAVTKAS 51 100 ENSBTAP00000003354/1-890 GGLPQFGDEY DFYRSFPGFQ AFCETQGDRL LQCMSRVMQY HGCRSNIKDR BACU002982/1-1139 GGLPQFGDEY DFYRSFPGFL AFCETQGDRL LQCMSRVMQY HGCRSNIKDQ bmy_20130T0/1-1001 GGLPQFGDEY DFYRSFPGFQ AFCETQGDRL LQCMSRVMQY HGCRSNIKGQ ENSTTRP00000001240/1-886 GGLPQFGDEY DFYRSFPGFQ AFCETQGDRL LQCMSRVMQY HGCRSNIKDQ 101 150 ENSBTAP00000003354/1-890 SKVTELEDKF DLLVDTNDVI LERVGILLDE ASGVNKNQQP VLPAGLQVPQ BACU002982/1-1139 NKVTELEDKF DLLVDTND-- ----GILLDE ASGVNKNQQP VLPAGLQVPK bmy_20130T0/1-1001 NKVTELEDKF DLLVDTNDVI LERVGILLDE ASGVNKNQQP VLPAGLQVPK ENSTTRP00000001240/1-886 NKVTELEDKF DLLVDANDVI LERVGILLDE ASGVNKNQQP VLPAGLQVPK 151 200 ENSBTAP00000003354/1-890 TIVSSWNRKA GEYSKKTKSE TFRLLHAKNI IRPQLKFREK IDNSNTPFLP BACU002982/1-1139 TIVSSWNRKA GEYSKKTKSE TFRLLHAKNI IRPQLKFREK IDNSNTPFLP bmy_20130T0/1-1001 TIVSSWNRKA GEYSKKTKSE TFRLLHAKNI IRPQLKFREK IDNSNTPFLP ENSTTRP00000001240/1-886 TIVSSWNRKA GEYSKKTKCE TFRLLHAKNI VRPQLKFREK IDNSNTPFLP 201 250 ENSBTAP00000003354/1-890 KIFIKPNAQK PLPQALSKER RERPQDRPED LDVPPALADL IHQQRTQQVE BACU002982/1-1139 KIFIKPNAQK PLPQALSKER RERPQDRPED LDVPPALADF IHQQRTQQVE bmy_20130T0/1-1001 KIFVKPNAQK PLPQALSKER RERPQDRPED LDVPPALADF IHQQRTQQVE ENSTTRP00000001240/1-886 KIFIKPNAQK PLPQALSKER RERPQDRPED LDVPPALADF IHQQRTQQ-E 251 300 ENSBTAP00000003354/1-890 QDMFAHPYQY ELDHFTPPDS VLQKPEPQLY RPVGETPCHF VSTLDELVEL BACU002982/1-1139 QDMFAHPYQY ELDHFTPPDS VLQKPEPQLY RPVAETPCHF VSSLDELVEL bmy_20130T0/1-1001 QDMFAHPYQY ELDHFTPPDS VLQKPEPQLY RPVGETPCHF VSSLDELVEL ENSTTRP00000001240/1-886 QDMFAHPYQY ELDHFTPPDS VLQKPEPQLY RPVGETPCHF VSSLDELVEL 301 350 ENSBTAP00000003354/1-890 NEKLLKCQEF AVDLEHHSYR SFLGLTCLMQ ISTRTEDFII DTLELRSDMY BACU002982/1-1139 NEKLLKCQEF AVDLEHHSYR SFLGLTCLMQ ISTRTEDFIV DTLELRSDMY bmy_20130T0/1-1001 NEKLLKCQEF AVDLEHHSYR SFLGLTCLMQ ISTRTEDFIV DTLELRSDMY ENSTTRP00000001240/1-886 NEKLLKCQEF AVDLEHHSYR SFLGLTCLMQ ISTRTEDFIV DTLELRSDMY 351 400 ENSBTAP00000003354/1-890 ILNESLTDPA IVKVFHGADS DIEWLQKDFG LYVVNMFDTH QAARLLNLGR BACU002982/1-1139 ILNESLTDPA IVKVFHGADS DIEWLQKDFG LYVVNMFDTH QAARLLNLGR bmy_20130T0/1-1001 ILNESLTDPA IVKVFHGADS DIEWLQKDFG LYVVNMFDTH QAARLLNLGR ENSTTRP00000001240/1-886 ILNESLTDPA IVKVFHGADS DIEWLQKDFG LYVVNMFDTH QAARLLNLGR 401 450 ENSBTAP00000003354/1-890 HSLDHLLKLY CSVESNKQYQ LADWRIRNPR PLPEEMLSYA RDDTHYLLYI BACU002982/1-1139 HSLDHLLKLY CNVESNKQYQ LADWRI---R PLPEEMLNYA RDDTHYLLYI bmy_20130T0/1-1001 HSLDHLLKLY CNVETNKQYQ LADWRI---R PLPEEMLNYA RDDTHYLLYI ENSTTRP00000001240/1-886 HSLDHLLKLY CNVESNKQYQ LADWRI---R PLPEEMLNYA RDDTHYLLYI 451 500 ENSBTAP00000003354/1-890 YDKMRLELWE RGNEQPTQLQ VVWQRSRDIC LKKFIKPIFT DESYLELYRK BACU002982/1-1139 YDKMRLELWE RGNEQPTQLQ VEWQRSRDIC LKKFIKPIFT DESYLELYRK bmy_20130T0/1-1001 YDKMRLELWE RGNEQPTQLQ VEWQRSRDIC LKKFIKPIFT DESYLELYRK ENSTTRP00000001240/1-886 YDKMRLELWE RGNEQPTQLQ VEWQRSRDIC LKKFIKPIFT DESYLELYRK 501 550 ENSBTAP00000003354/1-890 QKKHLNTQQL TAFQLLFAWR DKTARREDES YGYVLPNHMM LKIAEELPKE BACU002982/1-1139 QKKHLNTQQL TAFQLLFAWR DKTARREDES YGYVLPNHMM LKIAEELPKE bmy_20130T0/1-1001 QKKHLNTQQL TAFQLLFAWR DKTARREDES YGYVLPNHMM LKIAEELPKE ENSTTRP00000001240/1-886 QKKHLNTQQL TAFQLLFAWR DKTARREDES YGYVLPNHMM LKIAEELPKE 551 600 ENSBTAP00000003354/1-890 PQGIIACCNP VPPLVRQQIN EMHLLIQQAR EMPLLKSEVA AGVRKSGPLP BACU002982/1-1139 PQGIVACCNP VPPLVRQQIN EMDILVQQAR EMPLLKSEVA AGVRKNGPPP bmy_20130T0/1-1001 PQGIVACCNP VPPLVRQQIN EMHLLVQQAR EMPLLKSEVA AGVRKNGPPP ENSTTRP00000001240/1-886 PQGIIACCNP VPPLVRQQIN EMHLLIQQAR EMPLLKSEVA AGVRKDGPPP 601 650 ENSBTAP00000003354/1-890 NPERLENVLF GPHDCSHTPS DGYPLVPTDG PVPMQKQEGL LSAQEDEETL BACU002982/1-1139 NPERLENALF GPHDCSHAPS DGCPLIATSG PVPVRKQEGL PTAQEEEEAL bmy_20130T0/1-1001 NPERLENALF GPHDCSHAPS DGCPLIATSG PVPVQKQEGL PTAQEEEEAL ENSTTRP00000001240/1-886 NPERLENALF GPHDCSHAPS DGCPLIATNG PVPVQKQEGL PTAREEEEAL 651 700 ENSBTAP00000003354/1-890 PDIRCLVATA VVTLFNEPSA EGNEKSPLTV AQKKAQNIME SFENPFRMFL BACU002982/1-1139 PDTGCLIATA VITLFNEPSA EENGKSPLTV AQKKAQNIME SFENPFRMFL bmy_20130T0/1-1001 PDTGCLIATA VITLFNEPSA EENGKSPLTV AQKKAQNIME SFENPFRMFL ENSTTRP00000001240/1-886 PGSGCLIATA VITLFNEPSA EENGKGPLTV AQKKAQNIME SFENPFRMFL 701 750 ENSBTAP00000003354/1-890 PSVEHRAHIS QSAKFDPSSK IYEISNRWKL ASQVQVQREP KETAKKKAAE BACU002982/1-1139 PSLESRAHVS QTAKFDPSSK IYEISNRWKL ASQVQVQKEP KETAKKKAAE bmy_20130T0/1-1001 PSLESRAHVS QTAKFDPSSK IYEISNRWKL ASQVQVQKES KETAKKKAAE ENSTTRP00000001240/1-886 PSLESRAHVS QTAKFDPSSK IYEISNRWKL ASQVQVQKEC KETAKKKAAE 751 800 ENSBTAP00000003354/1-890 HTAARDQAQE EYRAAAEQAV SVRQQAALEN AAKKRERATS DPRTTEQKQE BACU002982/1-1139 QTAARDQAQE EYRAAAEQAV SVRQQAALEN AAKKRERTTS DPRTTEQKQN bmy_20130T0/1-1001 QTVARDQAQE EYRAAAEQAV SVRQQAALEN AAKKRERTTS DPRTTEQKQD ENSTTRP00000001240/1-886 HTAARDQAKE ECGAAAEQAV SVRQQAALEN AAKKRERTTS DPGTTEQKQD 801 850 ENSBTAP00000003354/1-890 KKRLKISKKP KDPDPPEKDF TPYDYSKLDF KAFAGNSKSK PSSQFDPSKQ BACU002982/1-1139 KKRLKISKKL KDPDPPEKDF TPYDYSKSDF KAFAGDSTST PSSQFDPNKQ bmy_20130T0/1-1001 KKRLKISKKL KDPDPPEKDF TPYDYSKSDF KAFAGDSKST PSSQFDPNKQ ENSTTRP00000001240/1-886 KKRLKISKKL KDPDPPEKDF TPYDYSKSDF KAFAGDSKST LSSQFDPNKQ 851 900 ENSBTAP00000003354/1-890 LQSGK----- ---------- ---------- ---------- ---------K BACU002982/1-1139 PQSGK----- ---------- ---------- ---------- ---------K bmy_20130T0/1-1001 PQSGKMSSCK KTKVTPVALE SLMGHLSSGV FSCASCSHGC HSPSMASFQK ENSTTRP00000001240/1-886 PPSGK----- ---------- ---------- ---------- ---------K 901 950 ENSBTAP00000003354/1-890 YIAAKKIKQS IGNKSMSFPT GKSD------ ---------- ---------- BACU002982/1-1139 CTAAKKIKQS MGNKSMSFPT GKSDSKSYGN VLVLDGVIQC TERDEFSYQE bmy_20130T0/1-1001 CTAAKKIRQS MGNKSMSFPT GKSD------ ---------- ---------- ENSTTRP00000001240/1-886 CTAAKKIKQP MGNKSMSFPT GKSD------ ---------- ---------- 951 1000 ENSBTAP00000003354/1-890 ---------- ---------- ---------- ---------- ---------- BACU002982/1-1139 MIANLPLYSH PNPRKVLIIG GGDGGVLREV VKHSSVESVV QCEIDEDVIQ bmy_20130T0/1-1001 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001240/1-886 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000003354/1-890 ---R------ ---------- ---------- ---------- ---------- BACU002982/1-1139 VSKKFLPGMA IGYSSSKLTL HVGDGFEFMK QNQDAFDVII TDSSDPMGPA bmy_20130T0/1-1001 ---RYVPDGR CG-------- ---------- ---------- --PGNPVSSS ENSTTRP00000001240/1-886 ---R------ ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000003354/1-890 ---------- ---------- ---------- ---------- ---------- BACU002982/1-1139 ESLFKESYYQ LMKTALKEDG ILCCQGECQW LHLDLIKEMR HFCKSLFPVV bmy_20130T0/1-1001 EAL------- ---------- ---------- ---------- ---------- ENSTTRP00000001240/1-886 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000003354/1-890 ---------- ---------- ------GFRH NWPKR----- ---------- BACU002982/1-1139 DYAYCTIPTY PSGQIGFMLC SKNPSTNFRE PVQQLTQKQV EEMQLKYYNS bmy_20130T0/1-1001 ---------- ---------- ---PGKTFRG PLPTRSR--- -----PLSFG ENSTTRP00000001240/1-886 ---------- ---------- ------GFRH NWPKR----- ---------- 1151 1200 ENSBTAP00000003354/1-890 ---------- ---------- ---------- ---------- -- BACU002982/1-1139 DVHQAAFVLP EFARKVSYLR GRETQGSLKG PFGPLTIQHP PD bmy_20130T0/1-1001 KLAGTGEVIA GCQSQPRPPR APVTLSALPV PYGFPGAPQS K- ENSTTRP00000001240/1-886 ---------- ---------- ---------- ---------- --