KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:20:42 2014 Check: 00 ..
Name: ENSP00000360129/1-629 Len: 633 Check: 5587 Weight: 1.00
Name: ENSBTAP00000003365/1-629 Len: 633 Check: 3097 Weight: 1.00
Name: ENSTTRP00000007079/1-633 Len: 633 Check: 9022 Weight: 1.00
Name: bmy_00835T0/1-458 Len: 633 Check: 8709 Weight: 1.00
Name: BACU000197/1-629 Len: 633 Check: 5171 Weight: 1.00
//
1 50
ENSP00000360129/1-629 MAISPRSDAT FSSQKSTPSE SPRTKKFPLT EEEIFYMNCR AAYLTVFKSS
ENSBTAP00000003365/1-629 MAISPGSDAA FSGQKPTHSE SPRSKKFLLT EEEIFYMNCR AAYLTVFKSS
ENSTTRP00000007079/1-633 MAISPGSDAA FSSQKSTLSE SPRSKKFPLT EEEIFYMNCR AAYLTVFKSS
bmy_00835T0/1-458 MAISPGSDAA FSSQKSXLSE SPXSKKFPLT EEEIFYMNCR AAYLTVFKSS
BACU000197/1-629 MAISPGSDAA FSSQKSTLSE SPRSKKFPLT EEEIFYMNCR AAYLTVFKSS
51 100
ENSP00000360129/1-629 LENIISKDQL YLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCIILRKEK
ENSBTAP00000003365/1-629 LDNIISKDQL YLALQHAGRN PSQKTINKYW TSQTAKLNFD DFCIILRKEK
ENSTTRP00000007079/1-633 LDNIISKDQL CLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK
bmy_00835T0/1-458 LDNIISKDQL CLALQYAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK
BACU000197/1-629 LDNIISKDQL CLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK
101 150
ENSP00000360129/1-629 PTSKAELLKS FKQLDVNDDG CILHTDLYKF LTKRGEKMTR EEVNAIINLA
ENSBTAP00000003365/1-629 PTSKAELLKS FKQLDVNDNG SILHTDLYKL LTKKGEKMTR EEVNAIINLA
ENSTTRP00000007079/1-633 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKXXXXXXX XXXXXXXXXX
bmy_00835T0/1-458 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKRGEKMTR EEVNAIINLA
BACU000197/1-629 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKRGEKMTR EEVNAIINLA
151 200
ENSP00000360129/1-629 DVNADGKFDY IKFCKLYMTT NEQCLKTTLE KLEVDSKLMR HQFGNHIEGS
ENSBTAP00000003365/1-629 DVNADGKFDY IKFCKLYMAT NEQCLKTTLE KLEVDSKLRR QQFGSHVEGS
ENSTTRP00000007079/1-633 XXXXXXXXXX XXFCKLYMTT NEQCLKTTLE KLEVDSKLRR QQFGSHMEGS
bmy_00835T0/1-458 DVNADGRFDY VKFXKLYMTT NEQCLKTTLE KLEVD----- ----------
BACU000197/1-629 DVNADGRFDY VKFCKLYMTT NEQCLKTTLE KLEVDGKLRR QQFGSHIEGA
201 250
ENSP00000360129/1-629 PERDPSPVPK PSPKITRKTD PETFLNKGDT RSSLLSATRK FKTSVSFTVT
ENSBTAP00000003365/1-629 PERAPSPVAK ASPRIIRKAD QESFSNKGDT RNSSLATARQ FKTSVSFTVT
ENSTTRP00000007079/1-633 PERDPSPVPK PSPNIIRKTD QESFSNKGDT GSSSLTTTRE FRTSVSFTIT
bmy_00835T0/1-458 ---------- ---------- -------GDT RSSLLTTTRE FRTSVSFTIT
BACU000197/1-629 PERDPSPVPK PSPRIIRKTD QESFSDKGDT KSSLLTTTRE FRTSVSFTIT
251 300
ENSP00000360129/1-629 MGANGNRNSK LMEPNLIKDW QHMQSKGCFF LEEDGEIISH QYRMQIAQRS
ENSBTAP00000003365/1-629 MGADSNQNSK LIEPHSIKEW QCVQSKGCFF LEEDGEIISH QYKMQIAQRS
ENSTTRP00000007079/1-633 MGASSKQNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS
bmy_00835T0/1-458 MGANSNRNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS
BACU000197/1-629 MGANSNRNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS
301 350
ENSP00000360129/1-629 MVYLTIKPLN LSQVEGKPSP WLSVDTALYI LKENESQANL QLVCFTELRN
ENSBTAP00000003365/1-629 LVYITIKPLS LSQAEGKPSP WLSVDTALYI LKENESQANL QLLYFTELRN
ENSTTRP00000007079/1-633 LVYLTIKPLN LSQAEGKPSP WLSVDTALYI LKENESQANL QLMCFTELRN
bmy_00835T0/1-458 LVYLTIKPLN LSQAEGK--- ---FKFSVFL KK-------- ----------
BACU000197/1-629 LVYLTIKPLN LSQAEGKPSP WLSVDTALYI LKENESQANL QLMCFTELRN
351 400
ENSP00000360129/1-629 REVFGWTGEL GPGIYWLIPS TTGCRLRKKI KPVTDEAQLV YRDETGELFL
ENSBTAP00000003365/1-629 RETFGWTGEL GPGIYWLVPS TTGCRLRKEV KPVTEEAQLV YRDETGELFL
ENSTTRP00000007079/1-633 REMFGWTGEL GPGIYWLIPS TTGCRLKKEI KPITEEAQLV HRDETGELFL
bmy_00835T0/1-458 ---------- ----YQFVPT ---------- ---------- ----------
BACU000197/1-629 REMFGWTGEL GPGIYWLIPS TTGCRLKKER KPITEEAQLV YRDETGELFL
401 450
ENSP00000360129/1-629 TKEFKSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE
ENSBTAP00000003365/1-629 TKEFRSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE
ENSTTRP00000007079/1-633 TKEFRSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE
bmy_00835T0/1-458 LKILMSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE
BACU000197/1-629 TKEFRSALSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE
451 500
ENSP00000360129/1-629 NFDTKRNELT RQGFMDLNLM EANDREGDPC DLWVTLHSMG YNKALELTEA
ENSBTAP00000003365/1-629 NFDTKKNELT RQGFMDLNLM EANDREGDPR DLWVTLHSMG YNKALELTEA
ENSTTRP00000007079/1-633 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA
bmy_00835T0/1-458 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA
BACU000197/1-629 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA
501 550
ENSP00000360129/1-629 CPFVIDIYAE KCKPKIKAVH MEACSGQLEK AICKSVLSNG DAKVMDGYEN
ENSBTAP00000003365/1-629 CPFVIDIYAD KCKPRIKAVH MEACSGQLEK AICKSVLNKG NAKVMDGYEN
ENSTTRP00000007079/1-633 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG DAKVMDGYEN
bmy_00835T0/1-458 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG DAKVMDGYEN
BACU000197/1-629 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG NAKVMDGYEN
551 600
ENSP00000360129/1-629 IIVHTYSCDT WITSVIENKS DEKVIIHISN ELSKNCINNR GLNIFAVEVG
ENSBTAP00000003365/1-629 IIIYTYKRDT WITAVIENKS DDKVIIHVNN ELSENCVNNR GLGIFAVEVA
ENSTTRP00000007079/1-633 IIVHTYKCDT WITSVIENKS DNKVIIHINN ELSKNCVNNR GLDIFAVEVA
bmy_00835T0/1-458 IIVHTYKCDT WITSVIEN-- ---------- ---------- ----------
BACU000197/1-629 IIVHTYKCDT WITSVIENKS DNKVIIHINN ELSKNCVNNR GLDIFAVEVA
601 650
ENSP00000360129/1-629 PKSTMVCQHV MPLNERQEWI YYCIYSLIS- ---
ENSBTAP00000003365/1-629 PNSTMVCQHV MPLNERQEWI YYCVYSLIS- ---
ENSTTRP00000007079/1-633 PKSTMVCQHV MPLNERQEWI YYCVYSLISH CFE
bmy_00835T0/1-458 ---------- ---------- ---------- ---
BACU000197/1-629 PKSTMVCQHV MPLNERQEWI YYCVYSLIS- ---