KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:42 2014 Check: 00 .. Name: ENSP00000360129/1-629 Len: 633 Check: 5587 Weight: 1.00 Name: ENSBTAP00000003365/1-629 Len: 633 Check: 3097 Weight: 1.00 Name: ENSTTRP00000007079/1-633 Len: 633 Check: 9022 Weight: 1.00 Name: bmy_00835T0/1-458 Len: 633 Check: 8709 Weight: 1.00 Name: BACU000197/1-629 Len: 633 Check: 5171 Weight: 1.00 // 1 50 ENSP00000360129/1-629 MAISPRSDAT FSSQKSTPSE SPRTKKFPLT EEEIFYMNCR AAYLTVFKSS ENSBTAP00000003365/1-629 MAISPGSDAA FSGQKPTHSE SPRSKKFLLT EEEIFYMNCR AAYLTVFKSS ENSTTRP00000007079/1-633 MAISPGSDAA FSSQKSTLSE SPRSKKFPLT EEEIFYMNCR AAYLTVFKSS bmy_00835T0/1-458 MAISPGSDAA FSSQKSXLSE SPXSKKFPLT EEEIFYMNCR AAYLTVFKSS BACU000197/1-629 MAISPGSDAA FSSQKSTLSE SPRSKKFPLT EEEIFYMNCR AAYLTVFKSS 51 100 ENSP00000360129/1-629 LENIISKDQL YLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCIILRKEK ENSBTAP00000003365/1-629 LDNIISKDQL YLALQHAGRN PSQKTINKYW TSQTAKLNFD DFCIILRKEK ENSTTRP00000007079/1-633 LDNIISKDQL CLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK bmy_00835T0/1-458 LDNIISKDQL CLALQYAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK BACU000197/1-629 LDNIISKDQL CLALQHAGRN PSQKTINKYW TPQTAKLNFD DFCLILRKEK 101 150 ENSP00000360129/1-629 PTSKAELLKS FKQLDVNDDG CILHTDLYKF LTKRGEKMTR EEVNAIINLA ENSBTAP00000003365/1-629 PTSKAELLKS FKQLDVNDNG SILHTDLYKL LTKKGEKMTR EEVNAIINLA ENSTTRP00000007079/1-633 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKXXXXXXX XXXXXXXXXX bmy_00835T0/1-458 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKRGEKMTR EEVNAIINLA BACU000197/1-629 PTSKAELLKS FKQLDVNDDG SILHTDLYKL LTKRGEKMTR EEVNAIINLA 151 200 ENSP00000360129/1-629 DVNADGKFDY IKFCKLYMTT NEQCLKTTLE KLEVDSKLMR HQFGNHIEGS ENSBTAP00000003365/1-629 DVNADGKFDY IKFCKLYMAT NEQCLKTTLE KLEVDSKLRR QQFGSHVEGS ENSTTRP00000007079/1-633 XXXXXXXXXX XXFCKLYMTT NEQCLKTTLE KLEVDSKLRR QQFGSHMEGS bmy_00835T0/1-458 DVNADGRFDY VKFXKLYMTT NEQCLKTTLE KLEVD----- ---------- BACU000197/1-629 DVNADGRFDY VKFCKLYMTT NEQCLKTTLE KLEVDGKLRR QQFGSHIEGA 201 250 ENSP00000360129/1-629 PERDPSPVPK PSPKITRKTD PETFLNKGDT RSSLLSATRK FKTSVSFTVT ENSBTAP00000003365/1-629 PERAPSPVAK ASPRIIRKAD QESFSNKGDT RNSSLATARQ FKTSVSFTVT ENSTTRP00000007079/1-633 PERDPSPVPK PSPNIIRKTD QESFSNKGDT GSSSLTTTRE FRTSVSFTIT bmy_00835T0/1-458 ---------- ---------- -------GDT RSSLLTTTRE FRTSVSFTIT BACU000197/1-629 PERDPSPVPK PSPRIIRKTD QESFSDKGDT KSSLLTTTRE FRTSVSFTIT 251 300 ENSP00000360129/1-629 MGANGNRNSK LMEPNLIKDW QHMQSKGCFF LEEDGEIISH QYRMQIAQRS ENSBTAP00000003365/1-629 MGADSNQNSK LIEPHSIKEW QCVQSKGCFF LEEDGEIISH QYKMQIAQRS ENSTTRP00000007079/1-633 MGASSKQNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS bmy_00835T0/1-458 MGANSNRNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS BACU000197/1-629 MGANSNRNSK LTEPNSIKEW QCVQSKGCFF LEEDGEIISH QYRMQIAQRS 301 350 ENSP00000360129/1-629 MVYLTIKPLN LSQVEGKPSP WLSVDTALYI LKENESQANL QLVCFTELRN ENSBTAP00000003365/1-629 LVYITIKPLS LSQAEGKPSP WLSVDTALYI LKENESQANL QLLYFTELRN ENSTTRP00000007079/1-633 LVYLTIKPLN LSQAEGKPSP WLSVDTALYI LKENESQANL QLMCFTELRN bmy_00835T0/1-458 LVYLTIKPLN LSQAEGK--- ---FKFSVFL KK-------- ---------- BACU000197/1-629 LVYLTIKPLN LSQAEGKPSP WLSVDTALYI LKENESQANL QLMCFTELRN 351 400 ENSP00000360129/1-629 REVFGWTGEL GPGIYWLIPS TTGCRLRKKI KPVTDEAQLV YRDETGELFL ENSBTAP00000003365/1-629 RETFGWTGEL GPGIYWLVPS TTGCRLRKEV KPVTEEAQLV YRDETGELFL ENSTTRP00000007079/1-633 REMFGWTGEL GPGIYWLIPS TTGCRLKKEI KPITEEAQLV HRDETGELFL bmy_00835T0/1-458 ---------- ----YQFVPT ---------- ---------- ---------- BACU000197/1-629 REMFGWTGEL GPGIYWLIPS TTGCRLKKER KPITEEAQLV YRDETGELFL 401 450 ENSP00000360129/1-629 TKEFKSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE ENSBTAP00000003365/1-629 TKEFRSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE ENSTTRP00000007079/1-633 TKEFRSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE bmy_00835T0/1-458 LKILMSTLSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE BACU000197/1-629 TKEFRSALSD IFEVIDLDGN GLLSLEEYNF FELRTSGEKC DEDAWAVCRE 451 500 ENSP00000360129/1-629 NFDTKRNELT RQGFMDLNLM EANDREGDPC DLWVTLHSMG YNKALELTEA ENSBTAP00000003365/1-629 NFDTKKNELT RQGFMDLNLM EANDREGDPR DLWVTLHSMG YNKALELTEA ENSTTRP00000007079/1-633 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA bmy_00835T0/1-458 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA BACU000197/1-629 NFDTKKNELT RQGFMDLNLM EANDGEGDPR DLWVTLHSMG YNKALELTEA 501 550 ENSP00000360129/1-629 CPFVIDIYAE KCKPKIKAVH MEACSGQLEK AICKSVLSNG DAKVMDGYEN ENSBTAP00000003365/1-629 CPFVIDIYAD KCKPRIKAVH MEACSGQLEK AICKSVLNKG NAKVMDGYEN ENSTTRP00000007079/1-633 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG DAKVMDGYEN bmy_00835T0/1-458 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG DAKVMDGYEN BACU000197/1-629 CPFVIDIYAD KCKPRIKTVH MEACSGQLEK AICKSVLNKG NAKVMDGYEN 551 600 ENSP00000360129/1-629 IIVHTYSCDT WITSVIENKS DEKVIIHISN ELSKNCINNR GLNIFAVEVG ENSBTAP00000003365/1-629 IIIYTYKRDT WITAVIENKS DDKVIIHVNN ELSENCVNNR GLGIFAVEVA ENSTTRP00000007079/1-633 IIVHTYKCDT WITSVIENKS DNKVIIHINN ELSKNCVNNR GLDIFAVEVA bmy_00835T0/1-458 IIVHTYKCDT WITSVIEN-- ---------- ---------- ---------- BACU000197/1-629 IIVHTYKCDT WITSVIENKS DNKVIIHINN ELSKNCVNNR GLDIFAVEVA 601 650 ENSP00000360129/1-629 PKSTMVCQHV MPLNERQEWI YYCIYSLIS- --- ENSBTAP00000003365/1-629 PNSTMVCQHV MPLNERQEWI YYCVYSLIS- --- ENSTTRP00000007079/1-633 PKSTMVCQHV MPLNERQEWI YYCVYSLISH CFE bmy_00835T0/1-458 ---------- ---------- ---------- --- BACU000197/1-629 PKSTMVCQHV MPLNERQEWI YYCVYSLIS- ---