KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:20:42 2014 Check: 00 .. Name: ENSTTRP00000012701/1-506 Len: 530 Check: 5250 Weight: 1.00 Name: bmy_13187T0/1-528 Len: 530 Check: 4274 Weight: 1.00 Name: ENSP00000408792/1-508 Len: 530 Check: 8594 Weight: 1.00 Name: ENSBTAP00000003368/1-462 Len: 530 Check: 8101 Weight: 1.00 // 1 50 ENSTTRP00000012701/1-506 ---------- ----MATSLL G--------X XXXXXXXXXX XXXXXXXXXX bmy_13187T0/1-528 MQFRESVMFR TLQSQAKPSL SSQKEDTGHE EPRLGSTPLA MLAATCNKIG ENSP00000408792/1-508 ---------- ----MATSLL G--------E EPRLGSTPLA MLAATCNKIG ENSBTAP00000003368/1-462 ---------- ----MATSLL G--------E EPRLGSTPLA MLAATCNKIG 51 100 ENSTTRP00000012701/1-506 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13187T0/1-528 SPSPSPSSLS DSSSSFGKGF HPWKRSSSSS SGSCNVVGSS LSSFGVSGPS ENSP00000408792/1-508 SPSPSPSSLS DSSSSFGKGF HPWKRSSSSS SASCNVVGSS LSSFGVSGAS ENSBTAP00000003368/1-462 SPSPSPSSLS DSSSSFGKGF HPWKRSSSSS SGSCNVVGSS LSSFGVSGPS 101 150 ENSTTRP00000012701/1-506 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13187T0/1-528 RNGGSSSAAA AAAAAAAAAA ALVTDSFSCG GSPGSSAFSL TSSSAAAAAA ENSP00000408792/1-508 RNGGSSSAAA AAAAAAAAAA ALVSDSFSCG GSPGSSAFSL TSSSAAAAAA ENSBTAP00000003368/1-462 RNGGSSS--- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012701/1-506 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13187T0/1-528 AAAAAASSSP FANDYSVFQA PGVSGG-GGG GGGGGGGSSA HSQDGSHQPV ENSP00000408792/1-508 AAAAAASSSP FANDYSVFQA PGVSGGSGGG GGGGGGGSSA HSQDGSHQPV ENSBTAP00000003368/1-462 AAAAAASSSP FANDYSVFQA PGVSG--GSG GGGGGGGSSA HSQDGSHQPV 201 250 ENSTTRP00000012701/1-506 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13187T0/1-528 FISKVHTSVD GLQGIYPRVG MAHPYESWFK PSHPGLGAAG DVSSAGASSW ENSP00000408792/1-508 FISKVHTSVD GLQGIYPRVG MAHPYESWFK PSHPGLGAAG EVGSAGASSW ENSBTAP00000003368/1-462 FISKVHTSVD GLQGIYPRVG MAHPYESWFK PSHPGLGAAG EVGSAGASSW 251 300 ENSTTRP00000012701/1-506 XXXXXXXXXX XXXNGAGALP GSLHPAAGGL QTSLHSPLGG YNSDYSGLSH bmy_13187T0/1-528 WDVGAGWIDV QNPNGAAALP GSLHPAAGGL QTSLHSPLGG YNSDYSGLSH ENSP00000408792/1-508 WDVGAGWIDV QNPNSAAALP GSLHPAAGGL QTSLHSPLGG YNSDYSGLSH ENSBTAP00000003368/1-462 WDVGAGWIDV QNPNGAAALP GSLHPAAGGL QTSLHSPLGG YNSDYSGLSH 301 350 ENSTTRP00000012701/1-506 SAFSSGASSH LLSPAGQHLM DGFKPVLPGS YPDSAPSPLA GAGGSMLSAG bmy_13187T0/1-528 SAFSSGASSH LLSPAGQHLM DGFKPVLPGS YPDSAPSPLA GAGGSMLSAG ENSP00000408792/1-508 SAFSSGASSH LLSPAGQHLM DGFKPVLPGS YPDSAPSPLA GAGGSMLSAG ENSBTAP00000003368/1-462 SAFSSGASSH LLSPAGQHLM DGFKPVLPGT YPDSAPSPLA GAGGSMLSAG 351 400 ENSTTRP00000012701/1-506 PSAPLGGSPR SSARRYSGRA TCDCPNCQEA ERLGPAGASL RRKGLHSCHI bmy_13187T0/1-528 PSAPLGGSPR SSARRYSGRA TCDCPNCQEA ERLGPAGASL RRKGLHSCHI ENSP00000408792/1-508 PSAPLGGSPR SSARRYSGRA TCDCPNCQEA ERLGPAGASL RRKGLHSCHI ENSBTAP00000003368/1-462 PSAPLGGSPR SSARRYSGRA TCDCPNCQEA ERLGPAGASL RRKGLHSCHI 401 450 ENSTTRP00000012701/1-506 PGCGKVYGKT SHLKAHLRWH TGERPFVCNW LFCGKRFTRS DELQRHLRTH bmy_13187T0/1-528 PGCGKVYGKT SHLKAHLRWH TGERPFVCNW LFCGKRFTRS DELQRHLRTH ENSP00000408792/1-508 PGCGKVYGKT SHLKAHLRWH TGERPFVCNW LFCGKRFTRS DELQRHLRTH ENSBTAP00000003368/1-462 PGCGKVYGKT SHLKAHLRWH TGERPFVCNW LFCGKRFTRS DELQRHLRTH 451 500 ENSTTRP00000012701/1-506 TGEKRFACPV CNKRFMRSDH LSKHVKTHS- -GGGGGSAGS GSGGKKGSDT bmy_13187T0/1-528 TGEKRFACPV CNKRFMRSDH LSKHVKTHS- GGGGGGSAGS GSGGKKGSDT ENSP00000408792/1-508 TGEKRFACPV CNKRFMRSDH LSKHVKTHSG GGGGGGSAGS GSGGKKGSDT ENSBTAP00000003368/1-462 TGEKRFACPV CNKRFMRSDH LSKHVKTHS- GGGGGGSAGS GSGGKKGSDT 501 550 ENSTTRP00000012701/1-506 DSEHSAAGSP PCHSPELLQP PEPGHRNGLE bmy_13187T0/1-528 DSEHSAAGSP PCHSPELLQP PEPGHRNGLE ENSP00000408792/1-508 DSEHSAAGSP PCHSPELLQP PEPGHRNGLE ENSBTAP00000003368/1-462 DSEHSAAGSP PCHSPELLPP PEPGHRNGLE