KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:45 2014 Check: 00 .. Name: ENSP00000309790/1-1132 Len: 1146 Check: 5126 Weight: 1.00 Name: ENSBTAP00000003380/1-1014 Len: 1146 Check: 5559 Weight: 1.00 Name: ENSTTRP00000006324/1-1042 Len: 1146 Check: 1732 Weight: 1.00 Name: bmy_20529T0/1-790 Len: 1146 Check: 4830 Weight: 1.00 Name: BACU019211/1-1054 Len: 1146 Check: 4612 Weight: 1.00 // 1 50 ENSP00000309790/1-1132 MIATPLKHSR IYLPPEASSQ RRNLPMDAIF FDSIPSGTLT PVKDLVKYQN ENSBTAP00000003380/1-1014 MIATSLKHPG IHLSSETSSQ RRNVPMHAIF FDSIPSGTLT PVKDLVKYQI ENSTTRP00000006324/1-1042 MIATPLKHPG IHLSSETSSQ RRNMPMHAVF FDSIPSGTLT PVKDLAKYQK bmy_20529T0/1-790 -------MPG -------PSP KRLIQLN--F F--------- ---------- BACU019211/1-1054 MIATPLKRPG IHLSSETSSQ RRNMPMHAVF FDNIPSGTLT PVKDLAKYQK 51 100 ENSP00000309790/1-1132 SSLKLNDHKK NQFLKMTTFN NKNIFQSTML TEATTSNSSL DISAIKPNKD ENSBTAP00000003380/1-1014 SSLKLNNHKK SQFVEMAVFN NKNVLQSTLL AEATTSNSSL DISAIKPNKD ENSTTRP00000006324/1-1042 SSLKWNDHKK SQFLEITVFN NK--FQSTML AEATTSNSSL DISAIKPNKD bmy_20529T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU019211/1-1054 SSLKWNDHKK SQFLEVTVFN NKNIFQSTML AEATASNSSL DISAIKPNKD 101 150 ENSP00000309790/1-1132 GLKNKANYES PGKIFLRMKE KVLRDKQEQP SRNSSLLEPQ KSGNNETFTP ENSBTAP00000003380/1-1014 EFKNKESYES PGKIFQRMKE KVLRNKQEQA SRN-SFLEPT QNES---FAP ENSTTRP00000006324/1-1042 GLKNKASYES PGKIFQRMKE KVLRNKQEQA SRN-SLLEPP TNESNKIFTP bmy_20529T0/1-790 ---------- ---------- -LLKKNQKNA ---------- ---------- BACU019211/1-1054 GLKNKASYES PGKIFQRMKE KVLRNKQEQA SRN-SLLEPP KNESNKIFTP 151 200 ENSP00000309790/1-1132 NRVEKKKLQH TYLCEEKENN KSFQSDDSSL RASVQGVPLE SSNNDIFLPV ENSBTAP00000003380/1-1014 NGAEERILQH TYLCEEKENN RSFQPENRSL R--------- ---------- ENSTTRP00000006324/1-1042 NGAEEGVLQH TYLCEGKENN KSFQPEDSSL RASVQEVPSD SSNN-IFLSV bmy_20529T0/1-790 ---------- ---------- ---------- -ASVQEVPSE SSNN-TFLSV BACU019211/1-1054 NGAEEGVLQH TYLCEEKENN KSFQPEDSSL RASVQEVPSE SSNN-TFLSV 201 250 ENSP00000309790/1-1132 KQKIQCQQEK KAPLHNLTYE LPTLNQEQEN FLAVEARNKT LTRAQLAKQI ENSBTAP00000003380/1-1014 ---------- ---------E LPVLTQKHKN ---VATANRA LTRALFRGES ENSTTRP00000006324/1-1042 KQKIQYQQEK KSPLCNLTYE LPILNQEHEN DSAAGVSNK- LTRAQLARLV bmy_20529T0/1-790 KQKIQYQQEK KAPLCNLTYE LPILNQEHEN DSAAGVSNKA LTRAQLARQV BACU019211/1-1054 KQKIQYQQEK KAPLCNLTYE LPILNQKHEN DSAAGVSNKA LTRAQLARQV 251 300 ENSP00000309790/1-1132 FHSKESIVAT TKSKKDTFVL ESVDSADEQF QNTNAETLST NCIPIKNGSL ENSBTAP00000003380/1-1014 LHTQESEYKI VISKKNYFVL FYIIYNFNEF KNISSENVTS VCVCIYNGGQ ENSTTRP00000006324/1-1042 LHSKDTVATT T--SKDTFVL EGTDSTCE-S QNTTIXXXXX XXXXXXXXXX bmy_20529T0/1-790 LHSKENTVAT TKSKKDTFVL EDTDSTCEKS QNTAIETL-- -CVPFKNGSQ BACU019211/1-1054 LHSKENTVAT TKSKKDTFVL EGTDSTCEKS QNTTIETL-- -CVPFKNGSQ 301 350 ENSP00000309790/1-1132 LMVS-DSERT TEGTSQQKVK EGNGKTVPGE TGLPGSMKDT CKIVLATPRL ENSBTAP00000003380/1-1014 LLVSGDSKTT TEGTSKQEIK EGNEITMHRE TDFPGSMNDT CKIVLATPQF ENSTTRP00000006324/1-1042 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_20529T0/1-790 LMVSDDSKIT TEGTSKQEIK EGNEKTMPRE TDLPGSMNDT CKIVLATPRF BACU019211/1-1054 LMVSDDSKIT TEGTSKQEIK EGNEKTMPRE TDLPGSMNDT CKIVLATPRF 351 400 ENSP00000309790/1-1132 HITIPRRSKR NISKLSPPRI FQTVTNGLKK NQVVQLQEWM IKSINNNTAI ENSBTAP00000003380/1-1014 HITIPQRSKR NAWTLSPI-I SQTIT---KL YQVVQLQEWM IKVINNNTAI ENSTTRP00000006324/1-1042 XXXXXXXXXX XXXXXXXX-X XXXXXXXXXX XXVVQLQEWM IKVINDNTAI bmy_20529T0/1-790 HIGIPQRSKS NAWKLSPS-T CQTITNGVKK NKVVQLQEWM IKVINDNTAI BACU019211/1-1054 HIGIPQRSKN NAWKLSPS-T CQTITNGVKK NKVVQLQEWM IKVINDNTAI 401 450 ENSP00000309790/1-1132 CVEGKLIDVT NIYWHSNVII ERIEHNKLRT ISGNVYILKG MIDQISMKEA ENSBTAP00000003380/1-1014 CVEGKLTDIT NIYWHSNVII ERIKHNKLRT LSGNIYVLKG MIDQISMKEA ENSTTRP00000006324/1-1042 CVEGKLTDIT NIYWHSNAII ERIKHNRLRT LSGNMYILKG MIDRISMKEA bmy_20529T0/1-790 CVEGKLM--- ---------- ---------- ---------- ---------- BACU019211/1-1054 CVEGKLIDIT NIYWHSNAII ERIKHNKLRT LSGNIYILKG MIDRTSMKEA 451 500 ENSP00000309790/1-1132 GYPNYLIRKF MFGFPENWKE HIDNFLEQLR AGEKNREKTK QKQKTGRSVR ENSBTAP00000003380/1-1014 GYPKYLIRKF MFGFPEKWKE YIDDFLEELR TCAKEKGKAR QKQKAKRCIP ENSTTRP00000006324/1-1042 GYPNYLIRKF MFGFPEKWKE YIDNFLEQLX XXXXXXXXXX XXXXXXXXXX bmy_20529T0/1-790 ---------- ---------- ---------- SCEKKEGKTR QNQKTERVVP BACU019211/1-1054 GYPNYLIRKF MFGFPEKWKE YIDNFLEQLR SCEKKEGKAR QKQKTERVVP 501 550 ENSP00000309790/1-1132 DIRKSMKNDA RENQTDTAQR ATTTYDFDCD NLELKSNKHS ESPGATELNM ENSBTAP00000003380/1-1014 AIQKSMKNDA RKEKPDVLQR TTTTYDLDCD PLEIK----- ---------- ENSTTRP00000006324/1-1042 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-------- ---------- bmy_20529T0/1-790 DIRKSMKNDA GEKKTDVLQR ATATYDLDCD HL-------- ---------- BACU019211/1-1054 DIRKSMKNDA GEKKTDVLQR ATATYDLDCD HL-------- ---------- 551 600 ENSP00000309790/1-1132 CHSNCQNKPT LRFPDDQVNN TIQNGGGDDL SNQELIGKKE YKMSSKKLKI ENSBTAP00000003380/1-1014 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006324/1-1042 ---------- ---------- ---------- ---------- ---------- bmy_20529T0/1-790 ---------- ---------- ---------- ---------- ---------- BACU019211/1-1054 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000309790/1-1132 GERTNERIIK SQKQETTEEL DVSIDILTSR EQFFSDEERK YMAINQKKAY ENSBTAP00000003380/1-1014 ---------- ----ERTKES KVSIDILTSR EQFFSDEERK YMTVSQKKPC ENSTTRP00000006324/1-1042 ---------- ----XRTEES KVSVDILTSR EQFFSDEERK YMAVNQKKPY bmy_20529T0/1-790 ---------- ----ERTEES KVSVDILTSR EQFFSDEERK YMAVNQKKPY BACU019211/1-1054 ---------- ----ERTEES KVSVDILTSR EQFFSDEERK YMAVNQKKPY 651 700 ENSP00000309790/1-1132 ILVTPLKSRK VIEQRCMRYN LSAGTIKAVT DFVIPECQKK ---------S ENSBTAP00000003380/1-1014 ILVTPLKSKK IIEQKCMDYN LSSDSIKAVT EFALGKPPKE SKTDSNETTS ENSTTRP00000006324/1-1042 ILVTPLKSKK VIEQKCMNYN LSFGTIKAVT DFAVRKHQKE ---------S bmy_20529T0/1-790 ILVTPLKSKK IIEQKCMNYN LSFGTIKAVT DFAVRKHQKE SKSNLSEPTS BACU019211/1-1054 ILVTPLKSKK IIEQKCMNYN LSFGTIKAVT DFAVRKHQKE SKSNLSEPTS 701 750 ENSP00000309790/1-1132 PISKSMGTLE NTFE---GHK SKNKEDCDER DLLTVNRKIK ISNLEKEQML ENSBTAP00000003380/1-1014 LVSKPTKTLE GTFECSVGHN SENTEDCCER DFFTVNHKIK IPSSKKEQMV ENSTTRP00000006324/1-1042 PISKPTKTLE STFEYSVGHK SKNKEGCSEC DLLTVNQKIK IPSPKKEQTV bmy_20529T0/1-790 PISKPTKTLE STFEYSVGHK SKNKEDCSEC DLLTVNQKIK IPSPKKEQTV BACU019211/1-1054 PISKPTKTLE STFEYSVGHK SKNKEDCSEC DLLTVNQKIK IPSPKKEQTV 751 800 ENSP00000309790/1-1132 TSDFKKNTRL LPKLKKIENQ VAMSFYKHQS SPDLSSEESE TEKEIKRKAE ENSBTAP00000003380/1-1014 TSDFKKNTR- LSKLKKIENQ VTVSFDKQQS SSDLSNEESE KEKKFRRKTE ENSTTRP00000006324/1-1042 TSDFKKNTR- LSKLKKTENQ VTVSFYKHQS SSDLSNEESE KGKEFRRKAG bmy_20529T0/1-790 TSDFKKNTR- LSKLKKTENQ VTVSFYKHQS SSDLSNEESE KGKEFRRKAG BACU019211/1-1054 TSDFKKNTR- LSKLKKTENQ VTVSFYKHQS SSDLSNEESE KGKEFRRKAG 801 850 ENSP00000309790/1-1132 -VKKTKAGNT KEAVVHLRKS TRNTSNIPVI LEPETEESEN EFYIKQKKAR ENSBTAP00000003380/1-1014 IVKKTRAINT EETVVHQSKS TRKTRTVPVM PECETEESEN ELYMKQKKAK ENSTTRP00000006324/1-1042 VVKKTRARNT KEIVVHLRKS TRKTRTIPVM SESETEESEN ELHMKQKKAR bmy_20529T0/1-790 VVKKTRARNT EEIVVHLRKS TRKTRTIPVM SESETEESEN ELHVKQKKAR BACU019211/1-1054 VVKTTRARNT EEIVVHLRKS TRKTRTIPVM SESETEESEN ELHMKQKKAR 851 900 ENSP00000309790/1-1132 PSVKETLQKS GVRKEFPITE AVGSDKTNRH PLECLPGLIQ DKEWNEKELQ ENSBTAP00000003380/1-1014 CSAKENLKKP DVGNELPNTE KMGSSKTNRH SLECLPGFTQ D-EWNKKELQ ENSTTRP00000006324/1-1042 CSAKENLQKS DISNELPVIE TMGSGKTNRY SLACLPGLIQ DEEWNKKELQ bmy_20529T0/1-790 CSAKENLQKS DISNELPVIE TMGSGKTNRY SLACLPGLIQ DEEWNKKELQ BACU019211/1-1054 CSAKENLQKS DIRNELPVIE TMVSGKTNRS YLACLPGLIQ DEEWNKKELQ 901 950 ENSP00000309790/1-1132 KLHCAFASLP KHKPGFWSEV AAAVGSRSPE ECQRKYMENP RGKGSQKHVT ENSBTAP00000003380/1-1014 KLHCAVASLP KHKSGFWSDV AMAVGSRSAD ECQRKYMEDP RGKRFQKHDT ENSTTRP00000006324/1-1042 KLHCAFASLP KHKPGFWSEV AMAVGSRSAH ECQRKYMEDP RGKRSQKHVT bmy_20529T0/1-790 KLHCTVSS-- ---------- ---------T VVQYLYFK-P RMSGSK---- BACU019211/1-1054 KLHCAFASLP KHKPGFWSEV AMAVGSRSAD ECQRKYMEDP RGKRSQKHVT 951 1000 ENSP00000309790/1-1132 KKKPANSKGQ NGKRGDADQK QTIKITAKVG TLKRKQQMRE FLEQLPKDDH ENSBTAP00000003380/1-1014 KKKPANPKGK NGKIDDADKK ETMKITAKVG TLKRKQQMRD FLEQLPKDDH ENSTTRP00000006324/1-1042 KKKPVNPK-- -GKISDSDKK QTIKITAKVG TLKRKQQMRD FLEQLPKDDH bmy_20529T0/1-790 RKSSGDVA-- -GNISDSDKK QTIKITAKVG TLKRKQQMRD FLEQLPKDDH BACU019211/1-1054 KKKPVNPK-- -GKISDSDKK QTIKITAKVG TLKRKQQMRD FLEQLPKDDH 1001 1050 ENSP00000309790/1-1132 DDFFSTTPLQ HQRILLPSFQ DSEDDDDILP NMDKNPTTPS SVIFPLVKTP ENSBTAP00000003380/1-1014 DDFFSATPLQ HQKILLPNFQ DSQEGDDILP NMDRNPTTPS SVVFPLAKTP ENSTTRP00000006324/1-1042 DDFFSTTPLQ HQRVLLPSFR DSQEEDDILP NMDRNPTTPS SVIFPLAKTP bmy_20529T0/1-790 DDFFSTTPLQ HQRVLLPSFR DSQEEDDVLP NMDRNPTTPS SVIFPLAKTP BACU019211/1-1054 DDFFSTTPLQ HQRVLLPSFW DSQEEDDVLP NMDRNPTTPS SVIFPLAKTP 1051 1100 ENSP00000309790/1-1132 QCQHVSPGML GSINRNDCDK YVFRMQKYHK SNGGIVWGNI KKKLVETDFS ENSBTAP00000003380/1-1014 QCHHVTPGML DSINRNDCDK YVFRMQKTHK SKGGTTWGNI KKKAMETDFS ENSTTRP00000006324/1-1042 QCQHVSPGML ASINRADCDK YVFRMQKTHK SKGGTVWGNI KKKTIESDFS bmy_20529T0/1-790 QCQHVSPGML ASINSI-CSP VVGVEAPRSV SE-------- LQCEIESDFS BACU019211/1-1054 QCQHVSPGML ASINRADCDK YVFRMQKTHK SKGGTVWGNI KKKTIESDFS 1101 1150 ENSP00000309790/1-1132 TPTPRRKTPF NTDLGENSGI GKLFTNAVES LDEEEKDYYF SNSDSA ENSBTAP00000003380/1-1014 TPPSRRKTPF NKELAENSGI GKLFTKAMES LDEEENDYYF SNSD-- ENSTTRP00000006324/1-1042 TPPSRRKTPF NKELAENSGI GKLFTNAMES LEEEEKDSYF SNSDSA bmy_20529T0/1-790 TPPSRRKTPF NKELAENSGI GKLFTNAMES LEEEEKDSYF SNSDSA BACU019211/1-1054 TPPSRRKTPF NKELAENSGI GKLFTNAMES LEEEEKDSYF SNSDSA