KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:45 2014 Check: 00 .. Name: ENSP00000360690/1-759 Len: 813 Check: 3301 Weight: 1.00 Name: ENSBTAP00000003384/1-759 Len: 813 Check: 7420 Weight: 1.00 Name: bmy_10746T0/1-786 Len: 813 Check: 5903 Weight: 1.00 Name: BACU007411/1-270 Len: 813 Check: 1419 Weight: 1.00 Name: ENSTTRP00000000251/1-755 Len: 813 Check: 80 Weight: 1.00 // 1 50 ENSP00000360690/1-759 MESVRIEQML SLPAEVSSDN LESAERGASA AQVDMGPHPK VAAEGPAPLP ENSBTAP00000003384/1-759 MDSFQAGQML SLPAELGSNN LELEEPAASA ARGDTGPHPE AAAEGPAPLP bmy_10746T0/1-786 MDSFQTEQML SLPAELCSNN LELAEPAASP ARGDTGPHPE AATEGPAPLP BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 MDSFQTEQML SLPAELCSNN LELAEPAASP ARGDTGPHPE AATEGPAPLP 51 100 ENSP00000360690/1-759 TREPEQEQSP GTSTPESKVL LTQADALASR GRIREALEVY RQLSERQQLV ENSBTAP00000003384/1-759 TRPPEQEQPP RASTPECKVL LTQADALASG GRLREALEVY RQLSERQQLV bmy_10746T0/1-786 TRPPPQERPP RASTPECKVL LTQADALASG GRLREALEVY RQLSERQQLV BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 TRPPPQERPP RASTPECKVL LTQADALASG GRLREALEVY RQLSERQQLV 101 150 ENSP00000360690/1-759 AEQLEQLVRC LAEKVPQGEA LAPAPPDEGS TASGTVAAEE TGAAAAAAAT ENSBTAP00000003384/1-759 AEQLEQLVRC LAENVPQAEE PAPEPPDGSR AGSCALAAEE AGAVTAAEAT bmy_10746T0/1-786 AEQLEQLVRC LAEKVPQGEE PAPEPPDGSR GASCALAAEE AGAATAAEAT BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 AEQLEQLVRC LAEKVPQGEE PAPEPPDGSR GASCALAAEE AGAATAAEAT 151 200 ENSP00000360690/1-759 EVWDGFKCRK CHGFLSDPVS LSCGHTFCKL CLERGRAADR RCALCGVKLS ENSBTAP00000003384/1-759 EVWDGFKCRK CHGFLSDPVS LSCGHTFCKL CLERGRAADR RCALCGVKLS bmy_10746T0/1-786 EVWDGFKCRK CHGFLSDPVS LSCGHTFCKL CLERGRAADR RCALCGVKLS BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 EVWDGFKCRK CHGFLSDPVS LSCGHTFCKL CLERGRAADR RCALCGVKLS 201 250 ENSP00000360690/1-759 ALMVATGRAR GARRAGQQPP PPLRVNVVLS GLLGKLFPGP ARASQLRHEG ENSBTAP00000003384/1-759 ALMVTTGRAR GTRRAGQQAP PPLRVNVVLS GLLGKLFPGP ARASQLRHEG bmy_10746T0/1-786 ALMVASGRAR GARRAGQQAP PPLRVNVVLS GLLGKLFPGP ARASQLRHEG BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 ALMVATGRAR GARRAGQQA- PPLRVNVVLS GLLGKLFPGP ARASQLRHEG 251 300 ENSP00000360690/1-759 NRLYRERQVE AALLKYNEAV KLAPNDHLLY SNRSQIYFTL ESHENALHDA ENSBTAP00000003384/1-759 NRLYRERQVE AALLKYNEAV RLAPNDHLLY SNRSQIYFTL ESHEDALHDA bmy_10746T0/1-786 NRLYRERQVE AALLKYNEAV RLAPNDHLLY SNRSQIYFTL ESHEDALHDA BACU007411/1-270 ---------- ---------- --APNDHLLY SNRSQIYFTL ESHEDALHDA ENSTTRP00000000251/1-755 NRLYRERQVE AALLKYNEAV RLAPNDHLLY SNRSQIYFTL ESHEDALHDA 301 350 ENSP00000360690/1-759 EIACKLRPMG FKAHFRKAQA LATLGKVEEA LREFLYCVSL DGKNKRARCE ENSBTAP00000003384/1-759 EIACKLRPMG FKAHFRKAQA LATLGKVEEA LREFLYCVSL DGRNKRARAE bmy_10746T0/1-786 EIACKLRPMG FKAHFRKAQA LATLGKVEEA LREFLYCVSL DGKNKRARAE BACU007411/1-270 EIAC------ ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 EIACKLRPMG FKAHFRKAQA LATLGKVEEA LREFLYCVSL DGKNKRARAE 351 400 ENSP00000360690/1-759 AQR------- ---------- ---------- ---------- ---------- ENSBTAP00000003384/1-759 AQR------- ---------- ---------- ---------- ---------- bmy_10746T0/1-786 AQRLLLSFFS PSFPGASQEH SPDILKLLAP HPRLKEHVES LATEGTSHNL BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 AQR------- ---------- ---------- ---------- ---------- 401 450 ENSP00000360690/1-759 -----DNLEL PHCSSQEEAA ARGDGSSLMD PAKVKGDGQQ HHMKDQE-EE ENSBTAP00000003384/1-759 -----ETPER PHCSSQEGAA ARGQGGSLMN PVTVTGDGPQ DHTEDSVGAE bmy_10746T0/1-786 PKLSQETLER PHCSSQEAAA ARGHRGSPMN LVPVKGDRRQ DGPEDQDGAE BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 -----ETLER PHCSGQETAA AGGHRGSPVN LVPVQGDRQQ DGPEDQDGAE 451 500 ENSP00000360690/1-759 EEKWDATSPK AASSKTGKCQ EKKRKHCQIE SQEETGMPNK ASKQDPPTDQ ENSBTAP00000003384/1-759 EEKGVAASSQ AASIKTGKCQ EKKRKHCQIE PQ-DPERPNK ASKPDPSTDP bmy_10746T0/1-786 EEDGAAASPQ AASSKTGKCQ EKKRKRCQIE PQ-DPEVPRK ASKPDPPAAP BACU007411/1-270 ---------- ---------- ---------- ---------- -----PPAAP ENSTTRP00000000251/1-755 EE-GAAASPQ AASSKTGKCQ GKKRKRGQLE PQ-DSEVPE- -ASKDPPAAP 501 550 ENSP00000360690/1-759 GDKPALSLPL ASFDASDLEC ALCMRLFYEP VTTPCGHTFC LKCLERCLDH ENSBTAP00000003384/1-759 RARPALSVPL ASFDASDLEC SLCMRLFYEP VTTPCGHTFC LKCLERCLDH bmy_10746T0/1-786 GAKPALSAPL ASFDASDLEC SLCMRLFYEP VTTPCGHTFC LKCLERCLDH BACU007411/1-270 EARPAISVPL ASFDASDLEC SLCM------ ---------- ---------- ENSTTRP00000000251/1-755 GAKPALSVPL ASFDASDLEC SLCMRLFYEP VTTPCGHTFC LKCLERCLDH 551 600 ENSP00000360690/1-759 NAKCPLCKDG LSQCLASRKY SKNVIMEELI AKFLPEELKE RRKLYEEEME ENSBTAP00000003384/1-759 NAKCPLCKDG LSQCLASRKY SKNVIMEELI AKFLPEELKE RRRLYEEEME bmy_10746T0/1-786 NAKCPLCKDG LSQV------ ---------- ---------- KRSFFLDWVS BACU007411/1-270 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000251/1-755 NAKCPLCKDG LSQCLASRKY SKNVIMEELI AKFLPEELKE RRRLYEEEME 601 650 ENSP00000360690/1-759 ELS-NLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM ENSBTAP00000003384/1-759 ELS-NLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM bmy_10746T0/1-786 LFGIGLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM BACU007411/1-270 ----SLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM ENSTTRP00000000251/1-755 ELS-NLNKNV PIFVCTMAYP TVPCPLHIFE PCYRLMIRRC IETGTRQFGM 651 700 ENSP00000360690/1-759 CLGDPVKGFA EYGCILEIRN VQFFADGRSV VDSIGKRRFR VLHQSQRDGY ENSBTAP00000003384/1-759 CLGDPVKGFA EYGCILEIRN VQFFADGRSV VDSIGKRRFK VLHQGQRDGY bmy_10746T0/1-786 CLGDPVKRFA EYGCILEIRN VQFFADGRSV VDSIGKRRFK VLHQGQRDGY BACU007411/1-270 CLGDPVKRFA EYGCILEIRN VQFFADGRSV VDSIGKRRFK VLHQGQRDGY ENSTTRP00000000251/1-755 CLGDPVKRFA EYGCILEIRN VQFFADGRSV VDSIGKRRFK VLHQGQRDGY 701 750 ENSP00000360690/1-759 NTADIEYIED QKVQGEDCAE LMGLHNCVYQ QASLWFHSLK LSLKNRILNH ENSBTAP00000003384/1-759 NTADIEYIED QKVQGEDCAE LMGLHSCVYE QASSWFHSLK SSLKNRILSH bmy_10746T0/1-786 NTADIEYIED QKVQGEDCAE LMGLHNCVYE QASSWFHSLK SSLKNRILNH BACU007411/1-270 NTADIEYIED QKVQGEDCAE LMGLHNCVYE QASSWFHSLK SSLKNRILNH ENSTTRP00000000251/1-755 NTADIEYIED QKVQGEDCAE LMGLHNCVYE QASSWFHSLK SSLKNRILNH 751 800 ENSP00000360690/1-759 FGPMPEKDAD PQMNPNGPAW CWWMLAVLPL ESRAQLPFLA MRSLKDRLNG ENSBTAP00000003384/1-759 FGPMPEKDAD PQINPNGPAW CWWTLAVLPL ESRAQLPFLA MRSLKDRLNG bmy_10746T0/1-786 FGPMPEKDAD PQINPNGPAW CWWTLAVLPL ESRAQLPFLA MRSLKDRLNG BACU007411/1-270 FGPMPEKDAD PQINPNGPAW CWWTLAVLPL ESRAQLPFLA MRSLKDRLNG ENSTTRP00000000251/1-755 FGPMPEKDAD PQINPNGPAW CWWTLAVLPL ESRAQLPFLA MRSLKDRLNG 801 850 ENSP00000360690/1-759 IRRVLAFISR NQN ENSBTAP00000003384/1-759 IRRVLAFISR NQN bmy_10746T0/1-786 IRRVLAFISR NQN BACU007411/1-270 IRRVLAFISR NQN ENSTTRP00000000251/1-755 IRRVLAFISR NQN