KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:47 2014 Check: 00 .. Name: ENSP00000382133/1-1146 Len: 1629 Check: 8352 Weight: 1.00 Name: bmy_04405T0/1-865 Len: 1629 Check: 9910 Weight: 1.00 Name: BACU001953/1-1510 Len: 1629 Check: 7132 Weight: 1.00 Name: ENSBTAP00000003395/1-1137 Len: 1629 Check: 7894 Weight: 1.00 Name: ENSTTRP00000012641/1-1059 Len: 1629 Check: 4373 Weight: 1.00 // 1 50 ENSP00000382133/1-1146 MKTPCIPSPK QGSKGRGQSP AAQVRGPTWN APAREGRPGA GHLGHLRVGA bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003395/1-1137 ---------M RAKLITEENA LENVPLSTRG SPGAGGAACA CLFGPLLVSA ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000382133/1-1146 CARGAQARAF FPFLSFLCYP RFRCLFCLQF AIPASRMEQL NELELLMEKS bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 -MRAAPRGLA LLFPRCVA-P GSPDFAWRQF EVSVLGMEQV DELELLMEKS ENSBTAP00000003395/1-1137 CARHLVDSRS FSPPLLLP-R GSPDFTRRWF AISAARMERV DELELLMEKS ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ------MEQV DELELLMEKS 101 150 ENSP00000382133/1-1146 FWEEAELPAE LFQKKVV-AS FPRTVLSTGM DNRYLVLAVN TVQNKEGNCE bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 FGDKAAPPAE LFQKKKVEAS FSKTVLSRGL DNRYLVLAVN IVQHEEGNHE ENSBTAP00000003395/1-1137 FWQEAEPSAE LFQKKKVEAS FSKIVLSRGM DNRYLVLAVD IVQSEEGNHE ENSTTRP00000012641/1-1059 FGDNAAQPAE LFQKKKVEAS FSKAVLSRGM DNRYLVLAVN IVQNEEGNHE 151 200 ENSP00000382133/1-1146 KRLVITASQS LENKELCILR NDWCSVPVEP GDIIHLEGDC TSDTWIIDKD bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 KHLIITASQS LEYKELCILR NDWCSVPVEA GDIIHLEGDC ISDTWIIDED ENSBTAP00000003395/1-1137 KHLIITASQS LEYKELCILR NDWCSVPVEP GDIIHLEGDC ISNTWIIDED ENSTTRP00000012641/1-1059 KHLIITASQS LECKELCILR NDWCSVPVEP GDIIHLEGDC ISDTWIIDED 201 250 ENSP00000382133/1-1146 FGYLILYPDM LISGTSIASS IRCMRRAVLS ETFRSSDPAT RQMLIGTVLH bmy_04405T0/1-865 ---------- ---------- ---------- ---------- --MLIGTVLH BACU001953/1-1510 FGYLILYPDM LISGTSIASS IRCMRRAVLS ETFKSSDPAT RQMLIGTVLH ENSBTAP00000003395/1-1137 FGYLILYPDM LISGTSIASS IRCMRRAVLS ETFRSSDPAT RQMLIGTVLH ENSTTRP00000012641/1-1059 FGYLILYPDM LISGTSIASS IRCMRRAVLS ETFKSSDPAT RQMLIGTILH 251 300 ENSP00000382133/1-1146 EVFQKAINNS FAPEKLQELA FQTIQEIRHL KEMYRLNLSQ DEIKQEVEDY bmy_04405T0/1-865 EVFQKAISDS FAPEKLQELA FQTVQEIRHL KEMYRLNLNQ DEIKQEVEEY BACU001953/1-1510 EVFQKAISDS FAPEKLQELA FQTVQEIRHL KEMYRLNLNQ DEIKQEVEEY ENSBTAP00000003395/1-1137 EVFQKAVSDS FAPEKLQELA SQTIQEIRHL KEMYRLKLNQ DEIKQEVEEY ENSTTRP00000012641/1-1059 EVFQKAISDS FAPGKLQELA FQTVQEIRHL KEMYRLNLNQ DEIKQEVEEY 301 350 ENSP00000382133/1-1146 LPSFCKWAGD FMHKNTSTDF PQMQLSLPSD NSKDNSTCNI EVVKPMDIEE bmy_04405T0/1-865 LPSFSKWAGD FMHKHTSTDF PQMQLSLPSD GSNGNSTCNI EVINSLDIEE BACU001953/1-1510 LPSFSKWAGD FMHKHTSTDF PQMQLSLPSD GSNGNSTCNI EVINSLDIEE ENSBTAP00000003395/1-1137 LPSFSKWAGD FMHKHTSTDF PQMQLSLPSD GSNSNSTCNI EVTNSLDIEE ENSTTRP00000012641/1-1059 LPSFSKWAGD FMHKHTSTDF PQMQLSLPSD GSDGNSTCNI EVINSLDIEE 351 400 ENSP00000382133/1-1146 SIWSPRFGLK GKIDVTVGVK IHRGYKTKYK IMPLELKTGK ESNSIEHRSQ bmy_04405T0/1-865 SIWSPRFGLK GKIDVTVGVK IHRGCRTKYK IMPLELKTGK ESNSIEHRSQ BACU001953/1-1510 SIWSPRFGLK GKIDVTVGVK IHRGCKTKYK IMPLELKTGK ESNSIEHRSQ ENSBTAP00000003395/1-1137 SIWSPRFGLK GKIDVTVGVK IHRGCKTKYK IMPLELKTGK ESNSIEHRSQ ENSTTRP00000012641/1-1059 SIWSPRFGLK GKIDVTVGVK IHRGCKTKYK IMPLELKTGK ESNSIEHRSQ 401 450 ENSP00000382133/1-1146 VVLYTLLSQE RRADPEAGLL LYLKTGQMYP VPANHLDKRE LLKLRNQMAF bmy_04405T0/1-865 LVLYTLLSQE RRADPEAGLL LYLKTGQMYP VPANHLDKRE LLRLRNQMAF BACU001953/1-1510 LVLYTLLSQE RRADPEAGLL LYLKTGQMYP VPANHLDKRE LLRLRNQMAF ENSBTAP00000003395/1-1137 LVLYTLLSQE RRADPEAGLL LYLKTGQMYP VPAKHLDKRE LLRLRNQMAF ENSTTRP00000012641/1-1059 LVLYTLLSQE RRADPEAGLL LYLKTGQMYP VPANHLDKRE LLRLRNQMAF 451 500 ENSP00000382133/1-1146 SLFHRISKSA T-RQKTQLAS LPQIIEEEKT CKYCSQIGNC ALYSRAVEQQ bmy_04405T0/1-865 SLFHRINKSA TGEEKTKLAP LPQIIEEQQT CKYCSQMGNC ALYSRAVEQQ BACU001953/1-1510 SLFHRINKSA TGEEKTKLAP LPQIIEEQQT CKYCSQMGNC ALYSR----- ENSBTAP00000003395/1-1137 SLFHRINKST --GEKTELAP LPQIIEEQQT CKYCSQMGNC ALYSRAVEQQ ENSTTRP00000012641/1-1059 SLFHRINKSA TGEEKTKLAP LPQIIEEQQT CKYCSQMGNC ALYSRAVEQQ 501 550 ENSP00000382133/1-1146 MDCSSVPIVM LPKIEEETQH LKQTHLEYFS LWCLMLTLES QSKDNKKNHQ bmy_04405T0/1-865 MDDSSVPTSM QPKIKEETQH LKLKHLEYFS LWCLMLTLES QSKHNTKNYQ BACU001953/1-1510 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003395/1-1137 MEDSSVPTSM WPKIKEETQH LKPIHLEYFS LWCLMLTLES QSKDNKRNYQ ENSTTRP00000012641/1-1059 MDDSSVPTSM QPKIKEETQH LKLTHLEYFS LWCLMLTLES QSKHNKKNYQ 551 600 ENSP00000382133/1-1146 NIWLMPASEM EKSGSCIGNL IRMEHVKIVC DGQYLHNFQC KHGAIPVTNL bmy_04405T0/1-865 TIWLTPASDI ---------- --TEHVKTVC DGQYLHNFQH KNGAMPITNL BACU001953/1-1510 ---------- EESGSCIRNL IRTEHVKTVC DGQYLHSFQR KHGAMPITHL ENSBTAP00000003395/1-1137 HIWLMPASEM EESGSCIGSL IRIEHVKTVC DGQYLHNFQR KNGAIPITNL ENSTTRP00000012641/1-1059 TIWLTPASDM EESGSCIGNL IRTEHVKTVC DGQYLHNFQH KNGVMPVTNL 601 650 ENSP00000382133/1-1146 MAGDRVIVSG EERSLFALSR GYVKEINMTT VTCLLDRNLS VLPESTLFRL bmy_04405T0/1-865 MAGDRIILSG EERTLFALSR G--------- -------NLS GLPESTLFRL BACU001953/1-1510 MAGDRVILSG EERTLFALSR GHMKEINMTT VTCLLDRNLS GLPESTLFRL ENSBTAP00000003395/1-1137 MAGDRIILSG EERTLFALSR GYVKEINSTT VTCSLDRNLS GLPESTLFRL ENSTTRP00000012641/1-1059 MAGDRIILSG EERTLFALSR GYVKEINMTT VTCLLDRNLS GLPESTLFRL 651 700 ENSP00000382133/1-1146 DQEEKNCDID TPLGNLSKLM ENTFVSKKLR DLIIDFREPQ FISYLSSVLP bmy_04405T0/1-865 DQEEKHCDID TPLGNLSKLM ENTYASQKLR DLIIDFREPQ FISYLSSVLP BACU001953/1-1510 DQEGKHCDID TPLGNLSKLM ENTYASQKLR DLIIDFREPQ FISYLSSVLP ENSBTAP00000003395/1-1137 DQEEKNCDID TPLGNLSKLM ENTRASQKLR DLIIDFREPQ FISYLSSVLP ENSTTRP00000012641/1-1059 DQEEKHCNID TPLGNLSKLM ENTSVSQKLR DLIIDFREPQ FISYLSSVLP 701 750 ENSP00000382133/1-1146 HDAKDTVACI LKGLNKPQRQ AMKKVLLSKD YTLIVGMPGT GKTTTICTLV bmy_04405T0/1-865 HDAKDTVACI LKGLNKPQRQ AMKKVLLSKD YTLIVGMPGT GKTTTICTLV BACU001953/1-1510 HDAKDTVACI LKGLNKPQRQ AMKKVLLSKD YTLIVGMPGT GKTTTICTLV ENSBTAP00000003395/1-1137 HEAKDTVACI LKGLNKPQRQ AMKKVLLSKD YTLIVGMPGT GKTTTICTLV ENSTTRP00000012641/1-1059 HDAKDTVACI LK-FDKPQR- AMKKVLL-KD YTLIVGMPGX XXXXXXXXXV 751 800 ENSP00000382133/1-1146 RILYACGFSV LLTSYTHSAV DNILLKLAKF KIGFLRLGQI QKVHPAIQQF bmy_04405T0/1-865 RILYACGFSV LLTSYTHSAV DNILLKLAKF KIGFLRLGQT QKVHPDIQKF BACU001953/1-1510 RILYACGFSV LLTSYTHSAV DNILLKLAKF KIGFLRLGQT QKVHPDIQKF ENSBTAP00000003395/1-1137 RILYACGFSV LLTSYTHSAV DNILLKLAKF KIGFLRLGQI QKVHPDIQKF ENSTTRP00000012641/1-1059 RILYACGFSV LLTSYTHSAV DNI-LKLAKF KIGFLRLGQT QKVHPDIQKF 801 850 ENSP00000382133/1-1146 TEQEICRSKS IKSLALLEEL YNSQLIVATT CMGINHPIFS RKIFDFCIVD bmy_04405T0/1-865 TEEDICRSKS IRSLALLEEL YNSQLIVATT CMGVNHPIFS RKTFDFCIVD BACU001953/1-1510 TEEDICRSKS IRSLALLEEL YNSQLIVATT CMGVNHPIFS RKTFDFCIVD ENSBTAP00000003395/1-1137 TEEEICRSKS IKSLALLEEL YNSQLIVATT CMGINHPIFS RKTFDFCIVD ENSTTRP00000012641/1-1059 TEEDICRSKS IRSLALLEEL YNSQLIVATT CMGVNHPIFS RKTFDFCIVD 851 900 ENSP00000382133/1-1146 EASQISQPIC LGPLFFSRRF VLVGDHQQLP PLVLNREARA LGMSESLFKR bmy_04405T0/1-865 EASQISQPIC LGPLFFSRRF VLVGDHQQLP PLVLNCEARA LGMSESLFKR BACU001953/1-1510 EASQISQPIC LGPLFFSRRF VLVGDHQQLP PLVLNCEARA LGMSESLFKR ENSBTAP00000003395/1-1137 EASQISQPVC LGPLFFSRRF VLVGDHQQLP PLVLNREARA LGMSESLFKR ENSTTRP00000012641/1-1059 EASQISQPVC LGPLFFSRRF VLVGDHQQLP PLVLNCEARA LGMSESLFKR 901 950 ENSP00000382133/1-1146 LEQNKSAVVQ LTVQYRMNSK IMSLSNKLTY EGKLECGSDK VANAVINLRH bmy_04405T0/1-865 LEQNKNAVVQ LTVQYRMNSK IMSLSNKLTY EGKLECGSDK VANAVINLPN BACU001953/1-1510 LEQNKNAVVQ LTVQYRMNSK IMSLSNKLTY EGKLECGSDK VANAVINLPN ENSBTAP00000003395/1-1137 LEQNKNAVVQ LTVQYRMNSK IMSLSNKLTY EGKLECGSDK VANAVINLPN ENSTTRP00000012641/1-1059 LEQNKNAVVQ LTVQYRMNSK IMSLSNKLTY EGKLECGSDK VANAVIHLPN 951 1000 ENSP00000382133/1-1146 FKDVKLELEF YADYSDNPWL MGVFEPNNPV CFLNTDKVPA PEQVEKGGVS bmy_04405T0/1-865 FKDVKLELEF YADYSENPWL VEVFEPKNPV CFLNTDKVPA PEQVEKGGVS BACU001953/1-1510 FKDVKLELEF YADYSENPWL VEVFEPKNPV CFLNTDKVPA PEQVEKGGVS ENSBTAP00000003395/1-1137 FKDVKLELEF YADYSENPWL IAAFEPNNPV CFLNTHKVPA PEQVEKGGVS ENSTTRP00000012641/1-1059 FKDVKLELEF YADYSENPWL VEVFEPKSPV CFLNTDKVPA PEQVEKGGVS 1001 1050 ENSP00000382133/1-1146 NVTEAKLIVF LTSIFVKAGC SPSDIGIIAP YRQQLKIIND LLAR-SIGMV bmy_04405T0/1-865 NITEAKLVVF LTSIFIKAGC NPSDIGIIAP YRQQLKVVND LLTHSSLGMV BACU001953/1-1510 NITEAKLVVF LTSIFIKAGC NPSDIGIIAP YRQQLKVIND LLAHSSLGMV ENSBTAP00000003395/1-1137 NIMEAKLVVF LTSVFIKAGC KPSDIGIIAP YRQQLKVISD LLAQSSVGMV ENSTTRP00000012641/1-1059 NITEAKLVVF LTSIFIKAGC NPSDIGIIAP YRQQLKVIND LLAHSSLGMV 1051 1100 ENSP00000382133/1-1146 EVNTVDKYQG RDKSIVLVSF VRSNKDGTVG EL-------- ----LKDWRR bmy_04405T0/1-865 EVNTVDKYQG RDKSIILVSF VRSNEDGTYT FL-------- ----KTQRTQ BACU001953/1-1510 EVNTVDKYQG RDKSIILVSF VRSNKDGTIF YILLVPCELV GEEGKRSATK ENSBTAP00000003395/1-1137 EVNTVDRYQG RDKSIVVVSF VRSNEDGTLG EL-------- ----LKDWRR ENSTTRP00000012641/1-1059 EVNTVDKYQG RDKSIILVSF VRSNEDGTLG EL-------- ----LKDWRR 1101 1150 ENSP00000382133/1-1146 LNVAITRAKH ----KLILLG CVPSL----- ---NCYPPLE --------KL bmy_04405T0/1-865 INKKTQRTKI ---------- ---------- ---------- --------TI BACU001953/1-1510 DPTAVERANL LNMAKLSIKG LIESALSFGR TLDSDYPPLQ QFFVVMEHCL ENSBTAP00000003395/1-1137 LNVAITRAKH ----KLILLG CVPSL----- ---SRYPPLR --------KL ENSTTRP00000012641/1-1059 LNVAITRAKH ----KLILLG CVPSL----- ---NRYPPLG --------KL 1151 1200 ENSP00000382133/1-1146 LNHLNSEKLI ID-------- ---------- ---------- ---------- bmy_04405T0/1-865 SFSLENMKVF VIY------- ---------- ---------- ---------- BACU001953/1-1510 KHGLKVRKSF LSYNKTIWGP LELVEKLYPE AEEIGASVRD LPGLKTPLGR ENSBTAP00000003395/1-1137 LNHLNSEKLI ID-------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 LYHLNSEKLI MD-------- ---------- ---------- ---------- 1201 1250 ENSP00000382133/1-1146 ---------- ---------- ---------- ------LPSR EHESL----- bmy_04405T0/1-865 ---W------ ---------- ---------- ------VIFK EDKAL----- BACU001953/1-1510 ARAWLRLALM QKKMADYLRC LIIQRDLLSE FYEYHALMME EEGAVIVGLL ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ------LPSG EHESL----- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ------LPSG EHESL----- 1251 1300 ENSP00000382133/1-1146 ---------- ---------- -----CHILG DFQRE----- ---------- bmy_04405T0/1-865 ---------- ---------- -----FSLL- -FPNH----- ---------- BACU001953/1-1510 VGLNVIDANL CVKGEDLDSQ VGVIDFSMY- -LKNEEDIGN KERNVQIAAI ENSBTAP00000003395/1-1137 ---------- ---------- -----FHLLG DFQRK----- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- -----CHILG DFQRR----- ---------- 1301 1350 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 LDQKNYVEEL NRQLNSTVSS LHSRVDSLEK SNTKLIEELA IAKNNIIKLQ ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 EENHQLRSEN KLILMKTQQH LEVTKVDVET ELQTYKHSRQ GLDEMYNEAR ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 RQLRDESQLR QDVENELAVQ VSMKHEIELA MKLLEKDIHE KQDTLIGLRQ ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 QLEEVKAINI EMYQKLQGSE ADLKEKNEIT ARLEEKTNKI TAAMRQLEQR ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 LQQAEKAQMD TEDEDKKYLQ ECQSKFDGLQ KQISQKEKQL SKLKIEDIKE ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000382133/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_04405T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU001953/1-1510 ANKALQGLVW LKDKEATHCK LCEKEFSLSK RKHHCRNCGE IFCNACSDNE ENSBTAP00000003395/1-1137 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000382133/1-1146 ---------- ---------- --------- bmy_04405T0/1-865 ---------- ------HDLL --------- BACU001953/1-1510 LPLPSSPKPV RVCDSCHALL IQRCSSNLP ENSBTAP00000003395/1-1137 ---------- ---------- --------- ENSTTRP00000012641/1-1059 ---------- ---------- ---------