KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:49 2014 Check: 00 .. Name: ENSP00000355241/1-505 Len: 573 Check: 7002 Weight: 1.00 Name: bmy_17832T0/1-405 Len: 573 Check: 812 Weight: 1.00 Name: BACU002550/1-448 Len: 573 Check: 2053 Weight: 1.00 Name: ENSBTAP00000003404/1-505 Len: 573 Check: 2455 Weight: 1.00 Name: ENSTTRP00000003622/1-498 Len: 573 Check: 3553 Weight: 1.00 // 1 50 ENSP00000355241/1-505 MATGALLPCS RPCPMSRLDF LKASHFSLGP DLRLHEGTMR TTSHRDF-AY bmy_17832T0/1-405 ---------- ----MSWLEL LKASHLALGP DPRLHVDAKQ STSHRDFPAY BACU002550/1-448 MAAG------ --VPNVLAGI PQGLALCAGS RP-----AAA RGRQADFPAY ENSBTAP00000003404/1-505 MAAGALLP-- --CPVSRLDF LKASHFALGP DPRLHADAKQ STSHRDFPAY ENSTTRP00000003622/1-498 MAAAALLP-- --CPMSWLEF LKASHFALGP DPRLHVDAKQ SASHRDFPAY 51 100 ENSP00000355241/1-505 PAATREPPSL QPPPALLFPM DPRWDREERV SEAHRAF-PP PSTPPWELLQ bmy_17832T0/1-405 RNVTRGPLCQ PPPCASLFQQ DARWAGQELL SETDCAYAPA SPLLSRERER BACU002550/1-448 RNVTRGPLCQ PPPRASLFQQ DARWAGQELP SETHCAYAPA SPLLSSERER ENSBTAP00000003404/1-505 SSAIRGPLCP PPPCASLFQK DARWAGQERL SETRCAYEPP PPMLLREQER ENSTTRP00000003622/1-498 RNVTRGPLCQ PPPRASLFQQ DARWAGQEPL SETHCAYAAA SPLLSRERER 101 150 ENSP00000355241/1-505 AQARERTLAM QAGNLHLHED AHAGIGLSNA HAAYGWPELP ARTRERIRGA bmy_17832T0/1-405 ELAWERTLAM QASNLHAHAD SRARTGLSTA RAHFGWPALP ERASEQIRGA BACU002550/1-448 ELARERTLAM QASKLHAHAD SRARTGLSTA RAHFGWPALP ERAR--IRGA ENSBTAP00000003404/1-505 ELARERTLAM QASHLHVHAE ARARTGLSTA RGDYGWPEPP ERAREQIRGA ENSTTRP00000003622/1-498 KLARERTLAM QASNLHAHAD SRARTGLSPA RAHRGRPALP ERASEQIRGA 151 200 ENSP00000355241/1-505 RLIFDRDSLP PGDRDKLRIP PTTHQALFPP HDARPQPRAP SCHLGGPNTL bmy_17832T0/1-405 RRVFDRDSVP SRHRAKLPIP PTAHQD---- ---------- ---------- BACU002550/1-448 RLVFDRDSVP SRDRAQLPTP PTAHQEFFPL HDICPKSREP SCH------- ENSBTAP00000003404/1-505 RLIFDRDSLP SGDPDKLRIP STTYREFFPL HDLCLKPREP ACRLCGPNPL ENSTTRP00000003622/1-498 RLIFDRDSVP SRDRAKLPIP PSAHQEFFSL HDICPKLREP SCL------F 201 250 ENSP00000355241/1-505 KWDYTRQ-DG TSYQRQFQAL PGPPALRCKR ASSGVELGDC KISYGSTCSE bmy_17832T0/1-405 ---------- ---------- ---------- ----TELGDF KIGYGPTCAE BACU002550/1-448 ---------- ---------- ---------- ----FELGDF KIGYGPMCAE ENSBTAP00000003404/1-505 QWEHKRQDDS TSYQRQFQAL PGPPALPCKR ASSSIELGDF KIGYRPMCTE ENSTTRP00000003622/1-498 EWEHRRQDDS TSYQRQFQSL PGPLALTCKR ASSSIELGDF KIGYGPMCAE 251 300 ENSP00000355241/1-505 QKQAYRPQDL PEDRYDKAQA TAHIHCVNIR PGDGLFRDRT TKAEHFYARE bmy_17832T0/1-405 QKQAYRPQVL PPDRYDKAQA SAHIHCVNIR PGDGLFHDRT AKGEHFYAGE BACU002550/1-448 QKQASRPQVL PPDRYDKAQA SAHIHCVNIR PGDGLFHDRT TKGEHSYARE ENSBTAP00000003404/1-505 QKQAYGPPDL PPDRYDKAQA SAHIHCVNIR PGDGLFHDRT TKGEHFYARE ENSTTRP00000003622/1-498 QKQAYRPQVL PPDRYDKAQA SAHIHCVNIR PGDGLFHDRT TKGEHFYARE 301 350 ENSP00000355241/1-505 P--------- ---------- --------EP FVLHHDQTPE SHILKGNWCP bmy_17832T0/1-405 PGESLLPAPP LAPTAASQSC SGPTLPLAEP FVLHHADSGV AH-REGNGRC BACU002550/1-448 PGESLLPAPP LAPTAASQSC PGPTLPLAQP FVLHHDRTPE SHILEGNGCP ENSBTAP00000003404/1-505 P--------- ---------- --------EP FLLHHDQTPE SHILEGNGCP ENSTTRP00000003622/1-498 P--------- ---------- --------EP FVLHHDLTPE SHILEGNGCP 351 400 ENSP00000355241/1-505 GPGSLDTFMQ YFYGQPPPPT QPPSRHVPHE KLQSHVTLGE PKLLKRFFKT bmy_17832T0/1-405 XP-------- ---------- --PSRHVPHE KLQSHITLGE PSLLGQFFQT BACU002550/1-448 GPGSLTTSTH FFRGQPLPAT KPPSRHVPHE KLQSHITLGE PSLLGQFFQT ENSBTAP00000003404/1-505 GPGSLTTSTH FFYRQPLRTS EPASRHVPHE TLQSHITLGE PSLLGQFFQT ENSTTRP00000003622/1-498 GPGRLTTSTH FFHGQPLPAT KPPSRHMPHE KLQSHITLGE PSLLGQFFQT 401 450 ENSP00000355241/1-505 TMGSDYCPSE WRQVQKAPNL HLQQSYLPRG TG-------- ---------- bmy_17832T0/1-405 SMGTDYLPPG MQKPPKALNL HLLQSNLPQG TGSERGPTSE APPLPQLWCR BACU002550/1-448 SMGTDYLAPG MQKPPKALNL HLLQSNPPQG TG-------- ---------- ENSBTAP00000003404/1-505 SMGTDYLPPG MPKPPKAPNL HLQRSNLPEG TG-------- ---------- ENSTTRP00000003622/1-498 SMGTDYYPLG C-RPPKALNL RLLQSNLPQG TG-------- ---------- 451 500 ENSP00000355241/1-505 ---------- ---------E FDFLTMNQKM LKPHRTPPAP VTEEMLQRCK bmy_17832T0/1-405 PRPIPPRPLP DSATPPKSPE TDFLTMNQKM LKPHRIAPAS MTEEMPQR-- BACU002550/1-448 ---------- ---------E TDFSTMNQKM LKPHRTAPAS MTEEMPQR-- ENSBTAP00000003404/1-505 ---------- ---------D LDFLTMNQKM LKPHGIAPAS VTKELLQRCK ENSTTRP00000003622/1-498 ---------- ---------X XXXXXXXXXX XXXXXXXXXX XXXXXXXXCR 501 550 ENSP00000355241/1-505 YSHMEPPLGG LRFFSTQYKD EFPFKYQGPA ALRLKNPQEG FVPLGTPHQR bmy_17832T0/1-405 ---------- ---------- ---------- ---------- ---------- BACU002550/1-448 ---------- ---------- --------DP IISQTALSRS PLIDVAKVVR ENSBTAP00000003404/1-505 YSHLEPPLGQ QRFFSTLNKD EFTFKYQGPA VLRWDDFQES HLPLGSLHQW ENSTTRP00000003622/1-498 YSHSEPPPGR QRFFSTLNKD EFAFKYQGPG LLTWDDLQES HVPLGSPRQW 551 600 ENSP00000355241/1-505 GCRE-KIDPL VPQPPMYLCP SQQ bmy_17832T0/1-405 ---------- ---------- --- BACU002550/1-448 ELQGGQGGPA ILQAALRGSP P-- ENSBTAP00000003404/1-505 GCRARKVDPR APQTPIYPCP SQQ ENSTTRP00000003622/1-498 GCGAGKVDPR APQTPTYPCR SQQ