KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:20:50 2014 Check: 00 ..
Name: ENSP00000347847/1-931 Len: 1032 Check: 5972 Weight: 1.00
Name: ENSBTAP00000003407/1-925 Len: 1032 Check: 9710 Weight: 1.00
Name: ENSTTRP00000010909/1-925 Len: 1032 Check: 8021 Weight: 1.00
Name: bmy_00986T0/1-788 Len: 1032 Check: 7207 Weight: 1.00
Name: BACU019829/1-902 Len: 1032 Check: 771 Weight: 1.00
//
1 50
ENSP00000347847/1-931 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA
ENSBTAP00000003407/1-925 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA
ENSTTRP00000010909/1-925 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA
bmy_00986T0/1-788 ---LKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA
BACU019829/1-902 ---------- ---------- -TEDYLKRKI RSRPERSELV RMHILEETSA
51 100
ENSP00000347847/1-931 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII
ENSBTAP00000003407/1-925 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII
ENSTTRP00000010909/1-925 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII
bmy_00986T0/1-788 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII
BACU019829/1-902 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII
101 150
ENSP00000347847/1-931 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPLL
ENSBTAP00000003407/1-925 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPPP
ENSTTRP00000010909/1-925 XXXXXYPEVA DSSSLDEDSS DALSPEQLPS HES-GSVPSP LEAGVSEPLP
bmy_00986T0/1-788 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPLP
BACU019829/1-902 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQ-SVPSP LEARVSEPLP
151 200
ENSP00000347847/1-931 SATSASPTQV VSQLPMGRDS REMLFLAEQP PLPPPPLLPP SLTNGTTIPT
ENSBTAP00000003407/1-925 SATSVSPTQV VSQLPVGPES GETLFLAEQP PLP------P SLTNGTTVPA
ENSTTRP00000010909/1-925 SATSVSPTQV LSQLPVGPES GETVFLAEQP LPP------P SLANGTTVAT
bmy_00986T0/1-788 SATSVSPTQV LSQLPVGPES AETVFLAEQP PPP------P ILANGTTVAT
BACU019829/1-902 RATSVSPAQV LSLLPVGPES AETVFLAEQP PPP------P ILANGTTVAT
201 250
ENSP00000347847/1-931 AKSTPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDR
ENSBTAP00000003407/1-925 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK
ENSTTRP00000010909/1-925 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YILPDQKQDK
bmy_00986T0/1-788 AKPLPTLIKQ SQPKSAGEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK
BACU019829/1-902 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK
251 300
ENSP00000347847/1-931 GAPPMDSSYA KILQQQQLFL QLQILNQQQQ Q----HHNYQ AILPAPPKSA
ENSBTAP00000003407/1-925 GAPPMDSSYA KILQQQQLFL QLQILNQQQQ QQQQQHYNYQ TILPAPPKPA
ENSTTRP00000010909/1-925 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPPKPA
bmy_00986T0/1-788 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPPKPA
BACU019829/1-902 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPLKPA
301 350
ENSP00000347847/1-931 GEALGSSGTP PVRSLSTTNS SSSSGAPGPC GLARQNSTSL TGKPGALPAN
ENSBTAP00000003407/1-925 GEALGSAGGA PTRSLSATGS SSGSGAPGPS GLVRQNSTSL AGKPGALPAN
ENSTTRP00000010909/1-925 GEALGSGGAP LTRSLSATSS SSGSGAPGPS GLVRQNSTSL TGKPGALPAN
bmy_00986T0/1-788 GEALGSGGAP MTRSLSATSS SSGSGAPGLS GLVRQNSTSL TGKPGALPAN
BACU019829/1-902 GEALGSGGAP LTRSLSATSS SSGSGAPGPS GLVRQNSTSL TGKPGALPAN
351 400
ENSP00000347847/1-931 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTELI
ENSBTAP00000003407/1-925 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI
ENSTTRP00000010909/1-925 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI
bmy_00986T0/1-788 LDDMKMHPKW PLGSRQTRTA RLSTPLQVAE LKQELKLRSL PVSGTKTDLI
BACU019829/1-902 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI
401 450
ENSP00000347847/1-931 ERLRAYQDQI SPV-PGAPKA PAATSILHKA GEVVVAFPAA RLSTGPALVA
ENSBTAP00000003407/1-925 ERLRAYQEQV TPASPGAPKA P-ATSLLPKA GEVVVAFPTA RLSTGPALVA
ENSTTRP00000010909/1-925 ERLRTYQEQI SPA-TGAPKG PAAASILPKA GEVVVAFPAA RLSTGPTLVA
bmy_00986T0/1-788 ERLRAYQEQV SPT-AGAPKA PTAASILPKA GEVVVAFPAA RLSTGPTLVA
BACU019829/1-902 ERLRAYQEQV SPT-AGAPKA PAAASVLPKA GEVVVAFPAA RLSTGPTLVA
451 500
ENSP00000347847/1-931 AGLAPAEVVV ATVASSGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG
ENSBTAP00000003407/1-925 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG
ENSTTRP00000010909/1-925 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG
bmy_00986T0/1-788 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG
BACU019829/1-902 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG
501 550
ENSP00000347847/1-931 DTFGEMVTSP LTQLTLQASP LQILVKEEGP RAGSCCLSPG GRAELEGRDK
ENSBTAP00000003407/1-925 DSFGEMVTSP VTQLTLQASP LQVLVKEEGP RPGACCRSPG ARAELEGRDK
ENSTTRP00000010909/1-925 DTFGEMVTSP VTQLTLQTSP LQILVKEEGP RTGSCCLSPG MRAELEGRDK
bmy_00986T0/1-788 DTFGEMVTSP VTQLTLQASP LQILVKEEGP RAGSCCLSPG MRAELEGRDK
BACU019829/1-902 DTFGEMVTSP VTQLTLQASP LQILVKEEGP RAGSCCLSPG MRAELEGRDK
551 600
ENSP00000347847/1-931 DQMLQEKDKQ IEALTRMLRQ KQQLVERLKL QLEQEKRAQQ PA----PAPA
ENSBTAP00000003407/1-925 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PTPA
ENSTTRP00000010909/1-925 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PAPA
bmy_00986T0/1-788 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PTPAPAPAPA
BACU019829/1-902 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PAPA
601 650
ENSP00000347847/1-931 P----LGTPV KQENSFSSCQ LSQQPLGPAH PFNPSLAAPA TNHIDPC---
ENSBTAP00000003407/1-925 PAPLALGPAV KQENSFTSCQ LSRQPLGPEL PFGPSLAAPA APHAE-----
ENSTTRP00000010909/1-925 PALVTLGAAV KQESSLASCQ LSRQPPGPDC PFGPSLAGPA APHVDTCTLG
bmy_00986T0/1-788 PAPATLGAAV KQENSLASCQ LSRQPPGPDH PFGPSLAGPA AHHVDTCTLV
BACU019829/1-902 PAPATLGAAV KQENSLASCQ LSRQPPGPDH PFGPSLAGPT AHHVDTY---
651 700
ENSP00000347847/1-931 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000003407/1-925 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010909/1-925 PP-------- ---------- ---------- ---------- ----------
bmy_00986T0/1-788 PSAVVVKQEA VLPEPEPVPA QVTLGPSVKQ ENSLASCQLS RQPPGPDHPF
BACU019829/1-902 ---------- ---------- ---------- ---------- ----------
701 750
ENSP00000347847/1-931 ---------- ---AVAPGPP SVVVKQEALQ PEPEPVPAPQ LLLGPQGPSL
ENSBTAP00000003407/1-925 ---------- ---ACALAPP VVVVKQEAVP PEPEAAPAPQ LLLGPQGPSL
ENSTTRP00000010909/1-925 ---------- ---AVALVPP AVVVKQEAVL PEPEPAPAPQ LLLGPQGPSL
bmy_00986T0/1-788 GPSLAGPAAH HVDTCTLVPP AVVVKQEAVL PEPEPALAPQ LLLGPQGPSL
BACU019829/1-902 ---------- ---TCTLVPP AVVVKQEAVL PEPEPALAPQ LLLGPQGPSL
751 800
ENSP00000347847/1-931 IKGVAPPTLI TDSTGTHLVL TVTNKNADSP GLSSGSPQQP SSQPGSPAPA
ENSBTAP00000003407/1-925 VKGVTPPPLL TDSAGTHLVL TVT-KNTDSP GLASGSPQQP LSQPESPAPG
ENSTTRP00000010909/1-925 IKGVTPPTLL TDSTGTHLVL TVTNKNADSP GLASGSPQQL LSQRGFSAPG
bmy_00986T0/1-788 IKGVTPPTLL TDSTGTHLVL TVTNKNADSP GLASGSPQQV ----------
BACU019829/1-902 IKGVTPPTLL TDSTGTHLVL TVTNKNADGP GLASGSPQQL LSQPGSPAPG
801 850
ENSP00000347847/1-931 PSAQMDLEHP LQPLFGTPTS LLKKEPPGYE EAMSQQPKQQ ENGSSSQQMD
ENSBTAP00000003407/1-925 PPGHMDLEPP PQPLFGTPAS QPKKEPPGYE EAVSQQPRRQ ENGSSSQQMD
ENSTTRP00000010909/1-925 PPDQRDREHP PQPLIGPPTS LPKKEPPGYE EAVSQQPRQQ ENGSSSQQMD
bmy_00986T0/1-788 ---------- ---------- ------PG-- ---------- ----------
BACU019829/1-902 PPGQRDLEHP PQPLFGPRTS LPKKEPPGYE EAVSQQPRQQ ENGSSSQQMD
851 900
ENSP00000347847/1-931 DLFDILIQSG EISADFKEPP SLPGKEKPSP KTVCGSPLAA QPSPSAELPQ
ENSBTAP00000003407/1-925 DLFDILIQSG EISADFKE-- --PGKEKAPP TAACSSPLAA QPSPAAELPQ
ENSTTRP00000010909/1-925 DLFDILIQSG EISADFKE-- --PGKEKSPP RAACGSPLAA QPSPSAELPQ
bmy_00986T0/1-788 ---------- ---------- --CGRGRSPR RV-------- ----------
BACU019829/1-902 DLFDILIQSG EISADFKE-- --PGKEKSPL TAACGSPLAT QPSPSAELPQ
901 950
ENSP00000347847/1-931 AAPPPPGSPS LPGRLEDFLE SSTGLPLLTS GHDGPEPLSL IDDLHSQMLS
ENSBTAP00000003407/1-925 AAPPPSGSPA LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS
ENSTTRP00000010909/1-925 AVPPPSGSPA LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS
bmy_00986T0/1-788 ---------- ---------- ---------- ---------- ----------
BACU019829/1-902 AVPPPSGSPP LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS
951 1000
ENSP00000347847/1-931 STAILDHPPS PMDTSELHFV PEPSSTMGLD LADGHLDSMD WLELSSGGPV
ENSBTAP00000003407/1-925 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDSMD WLELSSGGPV
ENSTTRP00000010909/1-925 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDGMD -LELSS-GPV
bmy_00986T0/1-788 ---------- ---------- ---------- ---------- ----------
BACU019829/1-902 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDGMD WLELSSGGPV
1001 1050
ENSP00000347847/1-931 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL
ENSBTAP00000003407/1-925 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL
ENSTTRP00000010909/1-925 LSLTP-STTA PSLFSTDFLD GHDLQLHWDS CL
bmy_00986T0/1-788 ---------- ---------- ---------- --
BACU019829/1-902 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL