KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:50 2014 Check: 00 .. Name: ENSP00000347847/1-931 Len: 1032 Check: 5972 Weight: 1.00 Name: ENSBTAP00000003407/1-925 Len: 1032 Check: 9710 Weight: 1.00 Name: ENSTTRP00000010909/1-925 Len: 1032 Check: 8021 Weight: 1.00 Name: bmy_00986T0/1-788 Len: 1032 Check: 7207 Weight: 1.00 Name: BACU019829/1-902 Len: 1032 Check: 771 Weight: 1.00 // 1 50 ENSP00000347847/1-931 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA ENSBTAP00000003407/1-925 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA ENSTTRP00000010909/1-925 MPPLKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA bmy_00986T0/1-788 ---LKSPAAF HEQRRSLERA RTEDYLKRKI RSRPERSELV RMHILEETSA BACU019829/1-902 ---------- ---------- -TEDYLKRKI RSRPERSELV RMHILEETSA 51 100 ENSP00000347847/1-931 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII ENSBTAP00000003407/1-925 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII ENSTTRP00000010909/1-925 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII bmy_00986T0/1-788 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII BACU019829/1-902 EPSLQAKQLK LKRARLADDL NEKIAQRPGP MELVEKNILP VESSLKEAII 101 150 ENSP00000347847/1-931 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPLL ENSBTAP00000003407/1-925 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPPP ENSTTRP00000010909/1-925 XXXXXYPEVA DSSSLDEDSS DALSPEQLPS HES-GSVPSP LEAGVSEPLP bmy_00986T0/1-788 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQGSVPSP LEARVSEPLP BACU019829/1-902 VGQVNYPKVA DSSSFDEDSS DALSPEQPAS HESQ-SVPSP LEARVSEPLP 151 200 ENSP00000347847/1-931 SATSASPTQV VSQLPMGRDS REMLFLAEQP PLPPPPLLPP SLTNGTTIPT ENSBTAP00000003407/1-925 SATSVSPTQV VSQLPVGPES GETLFLAEQP PLP------P SLTNGTTVPA ENSTTRP00000010909/1-925 SATSVSPTQV LSQLPVGPES GETVFLAEQP LPP------P SLANGTTVAT bmy_00986T0/1-788 SATSVSPTQV LSQLPVGPES AETVFLAEQP PPP------P ILANGTTVAT BACU019829/1-902 RATSVSPAQV LSLLPVGPES AETVFLAEQP PPP------P ILANGTTVAT 201 250 ENSP00000347847/1-931 AKSTPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDR ENSBTAP00000003407/1-925 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK ENSTTRP00000010909/1-925 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YILPDQKQDK bmy_00986T0/1-788 AKPLPTLIKQ SQPKSAGEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK BACU019829/1-902 AKPLPTLIKQ SQPKSASEKS QRSKKAKELK PKVKKLKYHQ YIPPDQKQDK 251 300 ENSP00000347847/1-931 GAPPMDSSYA KILQQQQLFL QLQILNQQQQ Q----HHNYQ AILPAPPKSA ENSBTAP00000003407/1-925 GAPPMDSSYA KILQQQQLFL QLQILNQQQQ QQQQQHYNYQ TILPAPPKPA ENSTTRP00000010909/1-925 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPPKPA bmy_00986T0/1-788 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPPKPA BACU019829/1-902 GAPPMDSSYA RILQQQQLFL QLQILNQQQQ Q----HYNYQ TILPAPLKPA 301 350 ENSP00000347847/1-931 GEALGSSGTP PVRSLSTTNS SSSSGAPGPC GLARQNSTSL TGKPGALPAN ENSBTAP00000003407/1-925 GEALGSAGGA PTRSLSATGS SSGSGAPGPS GLVRQNSTSL AGKPGALPAN ENSTTRP00000010909/1-925 GEALGSGGAP LTRSLSATSS SSGSGAPGPS GLVRQNSTSL TGKPGALPAN bmy_00986T0/1-788 GEALGSGGAP MTRSLSATSS SSGSGAPGLS GLVRQNSTSL TGKPGALPAN BACU019829/1-902 GEALGSGGAP LTRSLSATSS SSGSGAPGPS GLVRQNSTSL TGKPGALPAN 351 400 ENSP00000347847/1-931 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTELI ENSBTAP00000003407/1-925 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI ENSTTRP00000010909/1-925 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI bmy_00986T0/1-788 LDDMKMHPKW PLGSRQTRTA RLSTPLQVAE LKQELKLRSL PVSGTKTDLI BACU019829/1-902 LDDMK----- ---------- -------VAE LKQELKLRSL PVSGTKTDLI 401 450 ENSP00000347847/1-931 ERLRAYQDQI SPV-PGAPKA PAATSILHKA GEVVVAFPAA RLSTGPALVA ENSBTAP00000003407/1-925 ERLRAYQEQV TPASPGAPKA P-ATSLLPKA GEVVVAFPTA RLSTGPALVA ENSTTRP00000010909/1-925 ERLRTYQEQI SPA-TGAPKG PAAASILPKA GEVVVAFPAA RLSTGPTLVA bmy_00986T0/1-788 ERLRAYQEQV SPT-AGAPKA PTAASILPKA GEVVVAFPAA RLSTGPTLVA BACU019829/1-902 ERLRAYQEQV SPT-AGAPKA PAAASVLPKA GEVVVAFPAA RLSTGPTLVA 451 500 ENSP00000347847/1-931 AGLAPAEVVV ATVASSGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG ENSBTAP00000003407/1-925 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG ENSTTRP00000010909/1-925 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG bmy_00986T0/1-788 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG BACU019829/1-902 AGLAPAEVVV ATVTSNGVVK FGSTGSTPPV SPTPSERSLL STGDENSTPG 501 550 ENSP00000347847/1-931 DTFGEMVTSP LTQLTLQASP LQILVKEEGP RAGSCCLSPG GRAELEGRDK ENSBTAP00000003407/1-925 DSFGEMVTSP VTQLTLQASP LQVLVKEEGP RPGACCRSPG ARAELEGRDK ENSTTRP00000010909/1-925 DTFGEMVTSP VTQLTLQTSP LQILVKEEGP RTGSCCLSPG MRAELEGRDK bmy_00986T0/1-788 DTFGEMVTSP VTQLTLQASP LQILVKEEGP RAGSCCLSPG MRAELEGRDK BACU019829/1-902 DTFGEMVTSP VTQLTLQASP LQILVKEEGP RAGSCCLSPG MRAELEGRDK 551 600 ENSP00000347847/1-931 DQMLQEKDKQ IEALTRMLRQ KQQLVERLKL QLEQEKRAQQ PA----PAPA ENSBTAP00000003407/1-925 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PTPA ENSTTRP00000010909/1-925 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PAPA bmy_00986T0/1-788 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PTPAPAPAPA BACU019829/1-902 DQMLQEKDKQ IEELTRMLRQ KQQLVEWLRL QLEQEKRAQQ PT----PAPA 601 650 ENSP00000347847/1-931 P----LGTPV KQENSFSSCQ LSQQPLGPAH PFNPSLAAPA TNHIDPC--- ENSBTAP00000003407/1-925 PAPLALGPAV KQENSFTSCQ LSRQPLGPEL PFGPSLAAPA APHAE----- ENSTTRP00000010909/1-925 PALVTLGAAV KQESSLASCQ LSRQPPGPDC PFGPSLAGPA APHVDTCTLG bmy_00986T0/1-788 PAPATLGAAV KQENSLASCQ LSRQPPGPDH PFGPSLAGPA AHHVDTCTLV BACU019829/1-902 PAPATLGAAV KQENSLASCQ LSRQPPGPDH PFGPSLAGPT AHHVDTY--- 651 700 ENSP00000347847/1-931 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003407/1-925 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010909/1-925 PP-------- ---------- ---------- ---------- ---------- bmy_00986T0/1-788 PSAVVVKQEA VLPEPEPVPA QVTLGPSVKQ ENSLASCQLS RQPPGPDHPF BACU019829/1-902 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000347847/1-931 ---------- ---AVAPGPP SVVVKQEALQ PEPEPVPAPQ LLLGPQGPSL ENSBTAP00000003407/1-925 ---------- ---ACALAPP VVVVKQEAVP PEPEAAPAPQ LLLGPQGPSL ENSTTRP00000010909/1-925 ---------- ---AVALVPP AVVVKQEAVL PEPEPAPAPQ LLLGPQGPSL bmy_00986T0/1-788 GPSLAGPAAH HVDTCTLVPP AVVVKQEAVL PEPEPALAPQ LLLGPQGPSL BACU019829/1-902 ---------- ---TCTLVPP AVVVKQEAVL PEPEPALAPQ LLLGPQGPSL 751 800 ENSP00000347847/1-931 IKGVAPPTLI TDSTGTHLVL TVTNKNADSP GLSSGSPQQP SSQPGSPAPA ENSBTAP00000003407/1-925 VKGVTPPPLL TDSAGTHLVL TVT-KNTDSP GLASGSPQQP LSQPESPAPG ENSTTRP00000010909/1-925 IKGVTPPTLL TDSTGTHLVL TVTNKNADSP GLASGSPQQL LSQRGFSAPG bmy_00986T0/1-788 IKGVTPPTLL TDSTGTHLVL TVTNKNADSP GLASGSPQQV ---------- BACU019829/1-902 IKGVTPPTLL TDSTGTHLVL TVTNKNADGP GLASGSPQQL LSQPGSPAPG 801 850 ENSP00000347847/1-931 PSAQMDLEHP LQPLFGTPTS LLKKEPPGYE EAMSQQPKQQ ENGSSSQQMD ENSBTAP00000003407/1-925 PPGHMDLEPP PQPLFGTPAS QPKKEPPGYE EAVSQQPRRQ ENGSSSQQMD ENSTTRP00000010909/1-925 PPDQRDREHP PQPLIGPPTS LPKKEPPGYE EAVSQQPRQQ ENGSSSQQMD bmy_00986T0/1-788 ---------- ---------- ------PG-- ---------- ---------- BACU019829/1-902 PPGQRDLEHP PQPLFGPRTS LPKKEPPGYE EAVSQQPRQQ ENGSSSQQMD 851 900 ENSP00000347847/1-931 DLFDILIQSG EISADFKEPP SLPGKEKPSP KTVCGSPLAA QPSPSAELPQ ENSBTAP00000003407/1-925 DLFDILIQSG EISADFKE-- --PGKEKAPP TAACSSPLAA QPSPAAELPQ ENSTTRP00000010909/1-925 DLFDILIQSG EISADFKE-- --PGKEKSPP RAACGSPLAA QPSPSAELPQ bmy_00986T0/1-788 ---------- ---------- --CGRGRSPR RV-------- ---------- BACU019829/1-902 DLFDILIQSG EISADFKE-- --PGKEKSPL TAACGSPLAT QPSPSAELPQ 901 950 ENSP00000347847/1-931 AAPPPPGSPS LPGRLEDFLE SSTGLPLLTS GHDGPEPLSL IDDLHSQMLS ENSBTAP00000003407/1-925 AAPPPSGSPA LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS ENSTTRP00000010909/1-925 AVPPPSGSPA LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS bmy_00986T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU019829/1-902 AVPPPSGSPP LPGRLEDFLE SSTGLPLLTG GHEGPEPLSL IDDLHSQMLS 951 1000 ENSP00000347847/1-931 STAILDHPPS PMDTSELHFV PEPSSTMGLD LADGHLDSMD WLELSSGGPV ENSBTAP00000003407/1-925 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDSMD WLELSSGGPV ENSTTRP00000010909/1-925 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDGMD -LELSS-GPV bmy_00986T0/1-788 ---------- ---------- ---------- ---------- ---------- BACU019829/1-902 SSAILDHPPS PMDTSELHFA PEPSG-VGLD LADGHLDGMD WLELSSGGPV 1001 1050 ENSP00000347847/1-931 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL ENSBTAP00000003407/1-925 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL ENSTTRP00000010909/1-925 LSLTP-STTA PSLFSTDFLD GHDLQLHWDS CL bmy_00986T0/1-788 ---------- ---------- ---------- -- BACU019829/1-902 LSLAPLSTTA PSLFSTDFLD GHDLQLHWDS CL