KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:51 2014 Check: 00 .. Name: ENSBTAP00000003413/1-650 Len: 729 Check: 4964 Weight: 1.00 Name: ENSP00000353292/1-728 Len: 729 Check: 4761 Weight: 1.00 Name: ENSTTRP00000013714/1-539 Len: 729 Check: 4487 Weight: 1.00 Name: bmy_11507T0/1-476 Len: 729 Check: 5111 Weight: 1.00 Name: BACU020212/1-491 Len: 729 Check: 2400 Weight: 1.00 // 1 50 ENSBTAP00000003413/1-650 ---------- ---------- ---------- ---------- ---------- ENSP00000353292/1-728 MGMARGSLTR VPGVMGEGTQ GPELSLDPDP CSPQSTPGLM KGNKLEEQDP ENSTTRP00000013714/1-539 ---------- ---------- ---------- ---------- ---------- bmy_11507T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU020212/1-491 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000003413/1-650 ---------- ---------- ---------M KGDKPEEPGP GPEPSGPPPP ENSP00000353292/1-728 RPLQPIPGLM EGNKLEEQDS SPPQSTPGLM KGNKREEQGL GPEPAAPQQP ENSTTRP00000013714/1-539 ---------- ---------- ---------- ---------- ---------- bmy_11507T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU020212/1-491 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000003413/1-650 TEEEEALLEF HRSYRELFEF FCNNTTIHGA IRLVCSQHNR MKTVFWAVLW ENSP00000353292/1-728 TAEEEALIEF HRSYRELFEF FCNNTTIHGA IRLVCSQHNR MKTAFWAVLW ENSTTRP00000013714/1-539 ---------- ---------- ---------- ---------- ---------- bmy_11507T0/1-476 ---------- ---------- ---------- ---------- ---------- BACU020212/1-491 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000003413/1-650 LCTFGMMYWQ FGQLFGEYFS YPVSLNINLN SDKLVFPAVS ICTLNPYRYK ENSP00000353292/1-728 LCTFGMMYWQ FGLLFGEYFS YPVSLNINLN SDKLVFPAVT ICTLNPYRYP ENSTTRP00000013714/1-539 ---------- ---------- ---------- ------PAVT VCTLNPYRYT bmy_11507T0/1-476 ---------- ---------- ---------- ---------- --------YT BACU020212/1-491 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000003413/1-650 EIQEELEELD RITEQTLFDL YKYNSSKTLV AHARSRRDLR EPLPHPLQRL ENSP00000353292/1-728 EIKEELEELD RITEQTLFDL YKYSSFTTLV AGSRSRRDLR GTLPHPLQRL ENSTTRP00000013714/1-539 EMKKDLEELD RTTEQTLFDL YKYNSSNSLV AHARGRRDLR ESLPHPLQRL bmy_11507T0/1-476 EIKEELEELD RITEQTLFDL YKYNSSNTLV AHARGRRDLR ESLPHPLQRV BACU020212/1-491 ---------- ---------- ---------- ----GRRDLR ESLPHPLQRL 251 300 ENSBTAP00000003413/1-650 PVPAPPHAAR GVRRAGSSMR DNNPQVNRKD WKIGFQLCIQ ALCPCLYPAD ENSP00000353292/1-728 RVPPPPHGAR RARSVASSLR DNNPQVDWKD WKIGFQLCNQ NKSDCFYQTY ENSTTRP00000013714/1-539 PVPAPPHAAS RVRRSDSSLS HSNPKVNRKD WMIGFQLCNQ NNSDCFYRTY bmy_11507T0/1-476 PVPAPPHAAS RVRRSGSSLR DNNPQVNRKD WKIGFQLCNQ NKSDCFYQTY BACU020212/1-491 PVPAPPHAAS RVRRSGSSLR DNNPQVNRKD WKIGFQLCNQ NKSDCFYQTY 301 350 ENSBTAP00000003413/1-650 NSFIELYIAY HKIHPLNGYK LRHKANPSSL TEDPLDVFPF TCVFTKCVCN ENSP00000353292/1-728 SSGVDAVREW YRFHYINILS RLPETLP-SL EEDTLGNFIF ACRFNQVSCN ENSTTRP00000013714/1-539 SSGVDAVREW YRFHYINILS RRQDT-P-ML EEEALGKFIF ACRFNQVSCN bmy_11507T0/1-476 SSGVDAVREW YRFHYINILS RRQDTSP-SL EEDALGKFIF ACRFNQASCN BACU020212/1-491 SSGVDAVREW YRFHYINILS RRQDTSP-SL EEDALGKFIF ACRFNQASCN 351 400 ENSBTAP00000003413/1-650 NRNYSHFHHP MYGNCYTFND KNSSNLWMSS MPGVNNGLSL TLRTEQNDFI ENSP00000353292/1-728 QANYSHFHHP MYGNCYTFND KNNSNLWMSS MPGINNGLSL MLRAEQNDFI ENSTTRP00000013714/1-539 EANYSHFHHP MYGNCYTFND KNNSNLWMSF MPGVNNGLSL MLRTEQNDFI bmy_11507T0/1-476 EANYSHFHHP MYGNCYTFND KNSSNLWMSS ISGVNNGLSL TLRTEQNDFI BACU020212/1-491 EANYSHFHHP MYGNCYTFND KNSSNLWMSS ISGVNNGLSL TLRTEQNDFI 401 450 ENSBTAP00000003413/1-650 PLLSTVTGAR VMVHERDEPA FMDDAGFNLR PGVETSISMS KEAVDRLGGD ENSP00000353292/1-728 PLLSTVTGAR VMVHGQDEPA FMDDGGFNLR PGVETSISMR KETLDRLGGD ENSTTRP00000013714/1-539 PLLSTVTGAR VMVHGQDEPA FMDDGGFNLR PGMETSISMS KEAVDRLGGD bmy_11507T0/1-476 PLLSTVTGAR VMVHGQDEPA FMDDGGFNLR PGMETSISM- --TVERLGGN BACU020212/1-491 PLLSTVTGAR VMVHGQDEPA FMDDGGFNLR PGMETSISM- --TVARLGGD 451 500 ENSBTAP00000003413/1-650 YGDCTKNGSE VPVENLYNTK YTQQVCIHSC FQESMIKECG CAYIFYPRPD ENSP00000353292/1-728 YGDCTKNGSD VPVENLYPSK YTQQVCIHSC FQESMIKECG CAYIFYPRPQ ENSTTRP00000013714/1-539 YGDCTKNGSD VPVENLYGTK YTQQVCIHSC FQVNMIRECG CAYIFYPQPR bmy_11507T0/1-476 YGDCTKNGSD VPVENLYGTK YTQQVCIHSC FQVNMIRECG CAYIFYPPHR BACU020212/1-491 YGDCTKNGSD VPVENLYGTK YTQQVCIHSC FQVNMIRECG CAYIFYPPPR 501 550 ENSBTAP00000003413/1-650 GVEFCDYRKH NSWGYCYYKL QDAFSSDRLG CFTKCRKPCS VTIYKLSASY ENSP00000353292/1-728 NVEYCDYRKH SSWGYCYYKL QVDFSSDHLG CFTKCRKPCS VTSYQLSAGY ENSTTRP00000013714/1-539 GVEFCDYRKH NSWGYCYYKL QDAFSSDRLG CFTKCRKPCN MTTYKLSAGY bmy_11507T0/1-476 GVEFCDYRKH NSWGYCYYKL QDAFSSDRLG CFTKCRKPCS VTTYKLSAGY BACU020212/1-491 GVEFCDYRKH NSWGYCYYKL QDAFSSDRLG CFTKCRKPCS VTTYKLSAGY 551 600 ENSBTAP00000003413/1-650 SQWPSATSQD WVFQMLSRQN NYTIKNKRDG VAKLNIFFKE LNYKSNSESP ENSP00000353292/1-728 SRWPSVTSQE WVFQMLSRQN NYTVNNKRNG VAKVNIFFKE LNYKTNSESP ENSTTRP00000013714/1-539 SRWPSVTSQD WVFQMLSLQN NYTVKNKRDG IAKLNIFFKE LNYKTNSESP bmy_11507T0/1-476 SRWPSVTSQD WVFKMLSRQN NYTIKNKRDG VAKLNIFFKE LNYKTNSESP BACU020212/1-491 SRWPSVTSQD WVFKMLSRQN NYTIKNKRDG VAKLNIFFKE LNYKTNSESP 601 650 ENSBTAP00000003413/1-650 SVTMVTLLSN LGSQWSLWFG SSVLSVVEMA ELIIDLLVIT FLMLLRRFRS ENSP00000353292/1-728 SVTMVTLLSN LGSQWSLWFG SSVLSVVEMA ELVFDLLVIM FLMLLRRFRS ENSTTRP00000013714/1-539 SVTMVTLVST LGSQWSLWFG SSVLSVVEMA ELIFDLLAIT FFMLLRRFQS bmy_11507T0/1-476 SVTV------ ---------- ---------- ---------- ---------- BACU020212/1-491 SVTVLTLLSN LGSQWSLWFG SSVLSVVEVA ELIFDLLAIT FLMLLRRFQS 651 700 ENSBTAP00000003413/1-650 RYWSPGRGGK GTQEVASTPA ASLPSSFCPH PAFFSSSPPD PAISPALSAP ENSP00000353292/1-728 RYWSPGRGGR GAQEVASTLA SSPPSHFCPH PMSLSLSQPG PAPSPALTAP ENSTTRP00000013714/1-539 QYWSPGRG-- GGAQVDSTPP SSLPSRFCPH PASPSSSAAG PATSLALSAP bmy_11507T0/1-476 -----RRGRR GAQEVASTPA SSLPSRFCPH PASPSSSPLG PATSLALSAP BACU020212/1-491 QYWSPGRGRR GAQEVASTPA SSLPSRFCPH PASPSSSPLG PATSLALSAP 701 750 ENSBTAP00000003413/1-650 PPAYATLGPH PAPSGLAEAS TSAHAPGEP ENSP00000353292/1-728 PPAYATLGPR PSPGGSAGAS SSTCPLGGP ENSTTRP00000013714/1-539 PPAYATLGPR LAPSGSTEAS SSAHTPGEP bmy_11507T0/1-476 PPAYATLGPR LAPSGSTEAS SSAHAPGEP BACU020212/1-491 PPAYATLGLR LAPSGPTEAS SSAHAPGEP