KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:51 2014 Check: 00 .. Name: bmy_06580T0/1-163 Len: 246 Check: 9854 Weight: 1.00 Name: BACU002131/1-217 Len: 246 Check: 3541 Weight: 1.00 Name: ENSTTRP00000001517/1-190 Len: 246 Check: 8684 Weight: 1.00 Name: ENSP00000008938/1-196 Len: 246 Check: 5238 Weight: 1.00 Name: ENSBTAP00000003414/1-190 Len: 246 Check: 9736 Weight: 1.00 // 1 50 bmy_06580T0/1-163 ---------M TRRRALLAWA L-------LG RPRPRSGSG- ------SLGK BACU002131/1-217 MLCQPHGRYG DKFYDPLQYC CYDDAVVPLG RTRKCGNCTF RVCFKQCCPW ENSTTRP00000001517/1-190 ---------M TRRCALLAWA L--SGLLSLG AAQEASV--- ------SCIP ENSP00000008938/1-196 ---------M SRRSMLLAWA L--PSLLRLG AAQETEDPA- ------CCSP ENSBTAP00000003414/1-190 ---------M SRRYTPLAWV L--LALLGLG AAQD------ -------CGS 51 100 bmy_06580T0/1-163 LHPH------ ---------- ---------- R--------A PQRVEGPGVR BACU002131/1-217 LVKRPQESSM VKVKGQNCHL DPSSDDTVCH REWRALASER SQRLRRP-VR ENSTTRP00000001517/1-190 IVPR------ ---------- ---------- REWKARASER NQR-DGP-VR ENSP00000008938/1-196 IVPR------ ---------- ---------- NEWKALASEC AQHLSLP-LR ENSBTAP00000003414/1-190 IVSR------ ---------- ---------- GKWGALASKC SQRLRQP-VR 101 150 bmy_06580T0/1-163 AQPAPKTARA LHGGVARSGQ RLRHPGLLPA AGPERAALPR ADAG---LLR BACU002131/1-217 YAVVSHAAGS ACDTPASCLK QVQNVQHYHV -----RTLGG CDVGYNFLMG ENSTTRP00000001517/1-190 YAVVSHAAGS AWDTPSSCLK -IQNVQHYHV -----RTLGW CGVGYDFLMG ENSP00000008938/1-196 YVVVSHTAGS SCNTPASCQQ QARNVQHYHM -----KTLGW CDVGYNFLIG ENSBTAP00000003414/1-190 YVVVSHTAGS VCNTPASCQR QAQNVQYYHV -----RERGW CDVGYNFLIG 151 200 bmy_06580T0/1-163 QDRLQYEGRG WNTLGTHSGP TWNPIPLGIS FMGNYMDRVP PPRAIRAAQS BACU002131/1-217 EDRLQYEGRG WNTLGAHSGP TWNPIPLGIS FMGNYMDRVP PPHAIRAAQS ENSTTRP00000001517/1-190 EDRLQYEGRG WNTLGAHSGP T-NPISLGIS FMGNYVDRVP LPRAIRAAQS ENSP00000008938/1-196 EDGLVYEGRG WNFTGAHSGH LWNPMSIGIS FMGNYMDRVP TPQAIRAAQG ENSBTAP00000003414/1-190 EDGLVYEGRG WNTLGAHSGP TWNPIAIGIS FMGNYMHRVP PASALRAAQS 201 250 bmy_06580T0/1-163 LLACGVAQGF LTPSYEVKGH RDV------- ---------- ------ BACU002131/1-217 LLAFGVAQGF LTPSYEVKGH RDV------- ---------- ------ ENSTTRP00000001517/1-190 LLPCGVAQGF LTPSYEVKGH RDVQ-TFSPG YQLYEIIQQW SHYHRV ENSP00000008938/1-196 LLACGVAQGA LRSNYVLKGH RDVQRTLSPG NQLYHLIQNW PHYRSP ENSBTAP00000003414/1-190 LLACGAARGY LTPNYEVKGH RDVQQTLSPG DELYKIIQQW PHYRRV