KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:51 2014 Check: 00 .. Name: ENSP00000456782/1-345 Len: 352 Check: 8368 Weight: 1.00 Name: ENSBTAP00000003419/1-308 Len: 352 Check: 9122 Weight: 1.00 Name: ENSTTRP00000015191/1-343 Len: 352 Check: 7174 Weight: 1.00 Name: bmy_11354T0/1-286 Len: 352 Check: 2104 Weight: 1.00 Name: BACU004331/1-279 Len: 352 Check: 6184 Weight: 1.00 // 1 50 ENSP00000456782/1-345 MQPSGHRLRD VEHHPLLAEN DNYDSSSSSS SEADVADRVW FIRDGCGMIC ENSBTAP00000003419/1-308 MPSSGHRLRD VEHHPLLTEN DSYDSAASSP AEADAADRVW FIRDGCGMIC ENSTTRP00000015191/1-343 MPSSGHRLRD VEHHPLLTEN DNYDSSSSSS SEADVADRVW FIRDGCGMIC bmy_11354T0/1-286 MPSSGHRLRD VEHHPLLTES DNYDSSSSSS SEADVADRVW FIRDGCGMIC BACU004331/1-279 MPSSGHRLRD VEHHPLLTES DNYDSSSSSS SEADVADRVW FIRDGCGMIC 51 100 ENSP00000456782/1-345 AVMTWLLVAY ADFVVTFVML LPSKDFWYSV VNGVIFNCLA VLALSSHLRT ENSBTAP00000003419/1-308 AVLTWLLVVY ADFVVTFVML LPSKDFWYSV VNGVVFNCLA VLALSSHLRT ENSTTRP00000015191/1-343 AVVTWLLVVY ADFVVTFVML LPSRDFWYSA VNGVVFNCLA VLALSSHLRT bmy_11354T0/1-286 AVVTWLLVVY ADFVVTFVML LPSKDFWYSV VNGVVFNCLA VLALSSHLRT BACU004331/1-279 AVVTWLLVVY ADFVVTFVML LPSKDFWYSV VNGVVFNCLA VLALSSHLRT 101 150 ENSP00000456782/1-345 MLTDPEKSSD CRPSACTVKT GLDPTLVGIC GEGTESVQSL LLGAVPKGNA ENSBTAP00000003419/1-308 MLTDP----- ---------- ---------- ---------- --GAVPKGNA ENSTTRP00000015191/1-343 MLTDPEEW-- CQPSSCMLKT GLGPSFVGVC EEATTSVPRC QAGAVPKGNA bmy_11354T0/1-286 MLTDP----- ---------- ---------- ---------- --GAVPKGNA BACU004331/1-279 MLTDP----- ---------- ---------- ---------- --GAVPKGNA 151 200 ENSP00000456782/1-345 TKEYMESLQL KPGEVIYKCP KCCCIKPERA HHCSICKRCI RKMDHHCPWV ENSBTAP00000003419/1-308 TKEYMESLQL KPGEVIYKCP KCCCIKPERA HHCSICKRCI RKMDHHCPWV ENSTTRP00000015191/1-343 TKEYMESLQL KPGEVIYKCP KCCCIKPERA HHCSICKRCI RKMDHHCPWV bmy_11354T0/1-286 TKEYMESLQL KPGEVIYKCP KCCCVKPERA HHCSICKRCI RKMDHHCPWV BACU004331/1-279 TKEYMESLQL KPGEVIYKCP KCCCIKPERA HHCSICKRCI RKMDHHCPWV 201 250 ENSP00000456782/1-345 NNCVGEKNQR FFVLFT---- ---MYIALSS VHALILCGFQ FISCVRGQWT ENSBTAP00000003419/1-308 NNCVGEKNQR FFVLFT---- ---MYIALAS VHALVLCGLQ FIACVRGQWT ENSTTRP00000015191/1-343 NNCVGEKNQR FFVLFT---- ---MYIALAS VHALVLCGLQ FVACVRGQWT bmy_11354T0/1-286 NNCVGEKNQR FFVLFTVSKD TRVMYIALAS VHALVLCGLQ FVACVRGQWN BACU004331/1-279 NNCVGEKNQR FFVLFT---- ---MYIALAS VHALVLCGLQ FVACVRGQWN 251 300 ENSP00000456782/1-345 ECSDFSPPIT VILLIFLCLE GLLFFTFTAV MFGTQIHSIC NDETEIERLK ENSBTAP00000003419/1-308 ECSDFSPPVT VILLIFLCLE GLLFFTFTAV MFGTQIHSIC NDETEIERLK ENSTTRP00000015191/1-343 ECSGFSPPVT VILLIFLCLE GLLFFTFTAV MFGTQIHSIC NDETEIERLK bmy_11354T0/1-286 ---------- ---------- ---------V MFGTQIHSIC NDETEIERLK BACU004331/1-279 ---------- ---------- ---------V MFGTQIHSIC NDETEIERLK 301 350 ENSP00000456782/1-345 SEKPTWERRL RWEGMKSVFG GPPSLLWMNP FVGFRFRRLP TRPRKGGPEF ENSBTAP00000003419/1-308 SEKPTWERRL RWEGMKSVFG GPPSLLWMNP FVGFRFRRLQ TRPRKGAPEF ENSTTRP00000015191/1-343 SEKPTWERRL RWEGMKSVFG GPPSLLWMNP FVGFRFRRLQ TRPRKGGPEF bmy_11354T0/1-286 SEKPTWERRL RWEGMKSVFG GPPSLLWMNP CVGFRFRRLP TRPRKGGPEF BACU004331/1-279 SEKPTWERRL RWEGMKSVFG GPPSLLWMNP CVGFRFRRLP TRPRKGGPEF 351 400 ENSP00000456782/1-345 SV ENSBTAP00000003419/1-308 SV ENSTTRP00000015191/1-343 SV bmy_11354T0/1-286 SV BACU004331/1-279 SV