KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:20:53 2014 Check: 00 .. Name: ENSP00000367137/1-497 Len: 689 Check: 9016 Weight: 1.00 Name: ENSBTAP00000003424/1-483 Len: 689 Check: 7151 Weight: 1.00 Name: bmy_12193T0/1-616 Len: 689 Check: 721 Weight: 1.00 Name: BACU011849/1-343 Len: 689 Check: 8977 Weight: 1.00 // 1 50 ENSP00000367137/1-497 ---------- ---------- MSTGPDVKA- ---------- ---------- ENSBTAP00000003424/1-483 ---------- ---------M ELSTPHPRT- ---------- ---------- bmy_12193T0/1-616 MVDARAGKQH GSYKSGIILA DSAQPSPRAG IQSDIKGNQG PPPQRQVPVK BACU011849/1-343 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000367137/1-497 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003424/1-483 ---------- ---------- ---------- ---------- ---------- bmy_12193T0/1-616 SPVSKAQGLP KLFTKNITNR GTLDACGFRE DAGIVVKEFS KELIYCIEYR BACU011849/1-343 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000367137/1-497 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003424/1-483 ---------- ---------- ---------- ---------- ---------- bmy_12193T0/1-616 ETSKERNENR NPNTLLYITR ERNSGKYREK IEPQKNYAKV HFISIYVENI BACU011849/1-343 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000367137/1-497 ---------- ---------- -TVGDISSDG NLNVAQEECS RKGFCSVRHG ENSBTAP00000003424/1-483 ---------- ---------- ---------- PRGTGLSVPL VSGFCSVRHG bmy_12193T0/1-616 TVNTSVWEKR TKMFTTVEAE ATVGGIVNDG TLNTAQVQTF KKGFCSVRHG BACU011849/1-343 ---------- ---------- ---------- ---------- ---FCSVRHG 201 250 ENSP00000367137/1-497 LALILQLCNF SIYTQQMNLS IAIPAMVNNT APPSQPNAST ERPSTDSQGY ENSBTAP00000003424/1-483 LALILHLCNL SISTQQMNMS IALPVMVNNT ALPSSPNAST ERPPVDSQDN bmy_12193T0/1-616 LALIVHLCNF SISTQQMNMS IALPAMVNNT APPSPPSIST ERPPTDFQDN BACU011849/1-343 LALIVHLCNF SISTQQMNMS IALPAIVNNT APPSPPSIST ERPPTDFQDN 251 300 ENSP00000367137/1-497 WNETLKEFKA M---APAYDW SPEIQGIILS SL-----NYG SFLAPIPSGY ENSBTAP00000003424/1-483 WNETLNESKA VLGKAAVYDW SPEIQGVILS SL-----NYG SFLAPIPSSY bmy_12193T0/1-616 WNETLNEFKA V---AAMYDW SPEIQGIILS SL-----NYG SFLAPIPSGY BACU011849/1-343 WSETLNEFKA V---AAMYDW SPEIQGIILS SLILGAKNWS SFLAPIPSGY 301 350 ENSP00000367137/1-497 VAGIFGAKYV VGAGLFISSF LTLFIPLAAN AGVALLIVLR IVQGIAQVMV ENSBTAP00000003424/1-483 MAEVFGTRYL SGTCMFITSV LALFTPLAAD TGVTVLIVLR VIQGIVQVVL bmy_12193T0/1-616 LAEIFGTKYL AGAGMFITSV LTLFTPLAAD TGVTLLIVLQ IIQGIVQVML BACU011849/1-343 LAEIFGTKYL AGAGTFTTSV LTLFTPLAAD TGVTLLIVLQ IIQGIVQVML 351 400 ENSP00000367137/1-497 LTGQYSIWVK WAPPLERSQL TTIAGSGSML GSFIVLLAGG LLCQTIGWPY ENSBTAP00000003424/1-483 LTSQYSIWAR WAPPQERSQL ITIAVAGSVL GCFIIFLVGG YLCQTIGWPC bmy_12193T0/1-616 LTSQYSIWAR WAPPTERSQL ITIAVS---- ---------- ---------- BACU011849/1-343 LTSQYSIWAR WAPPTERSQL ITIAVSRSVL ASFIILLVGG HLCQTIGWPY 401 450 ENSP00000367137/1-497 VFYIFGGIGC ACCPLWFPLI YDDPVNHPFI SAGEKRYIVC SLAQQ----- ENSBTAP00000003424/1-483 VFYIFGGIGC VCSFLWFAVI YDDPVSHPFI STKEKEYIVC SLAQE----- bmy_12193T0/1-616 -----GGIGC ICSFLWFALI YDDPVNHPFI STSEKEYIIC SLAQEVHRGT BACU011849/1-343 VFYIFGVIGC ICSFLWFALI YDDPVNHPFI STSEKEYIIC SLAQE----- 451 500 ENSP00000367137/1-497 ---------- ---DCSPGWS LPIRAMIKSL PLWAILVSYF CEYWLFYTIM ENSBTAP00000003424/1-483 ---------- ----ILTCWS LPTKAMIKSL PLWSILIFYF SDYWHFFVLT bmy_12193T0/1-616 PLPFPYVSVV KSSDSPPGWS LPIKAMIKSL PLWSILVFYF SDYWHYFVIR BACU011849/1-343 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000367137/1-497 AYTPTYISSV LQANLRDSGI LSALPFVVGC ICIILGGLLA DFLLSRKILR ENSBTAP00000003424/1-483 SFLPTFITSV LQANIRDSGI LSALPFASAC ICVVPGGLLA DFLLSRKILR bmy_12193T0/1-616 SYLPTYISSV LQANIRDSGM LSALPFVSAC ICIVPGGLLA DFLLSRKILR BACU011849/1-343 ---------- -------SGM LSALPFVSAG ICIVPGGLLA DFLLSRKILR 551 600 ENSP00000367137/1-497 LITIRKLFTA IGVLFPSVIL VSLPWVRSSH SMTMTFLVLS SAISSFCESG ENSBTAP00000003424/1-483 LNTIRKLFTA IGVLFPAVLF TSVYWVRSSF STTIAFLTIS SAIKSFAQSG bmy_12193T0/1-616 LNTIRKLFTA IGVLLPCAFF VSLFWVRSSF SATMAFLILS SATKSLSQSG BACU011849/1-343 LNTIRKLFTA IGVLLPCAFF VSLFWVRSSF SATMAFLILS SSTKSLSQSG 601 650 ENSP00000367137/1-497 ALVNFLDIAP RYTGFLKGLL QVFAHIAGAI SPTAAGFFIS QDSEFGWRNV ENSBTAP00000003424/1-483 ALVNFVDIAP RYSALLRALS QIFSYLAGAI SPTVNGFLIS QDPELGWRNV bmy_12193T0/1-616 ALVNFMDIAP RC-------- ---------- ---------- --------RI BACU011849/1-343 ALVNFMDIAP R--------- ---------- ---------- ---------- 651 700 ENSP00000367137/1-497 FLLSAAVNIS GLVFYLIFGR ADVQDWAKEQ TFTHL---- ENSBTAP00000003424/1-483 FLLSAAVGIL GLIFYLIFGQ AEVQDWA--- --------- bmy_12193T0/1-616 FYQSAAVNIA GLFFYLIFGQ AEVQDWAKGR CAPASEQTE BACU011849/1-343 ---------- ---------- ---------- ---------