KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:53 2014 Check: 00 .. Name: ENSP00000353677/1-436 Len: 579 Check: 3090 Weight: 1.00 Name: ENSTTRP00000002789/1-290 Len: 579 Check: 5737 Weight: 1.00 Name: ENSBTAP00000003426/1-479 Len: 579 Check: 2958 Weight: 1.00 Name: bmy_12196T0/1-447 Len: 579 Check: 9687 Weight: 1.00 Name: BACU006896/1-485 Len: 579 Check: 584 Weight: 1.00 // 1 50 ENSP00000353677/1-436 ---------- -------MDG KPATRK---- ---------- ---------- ENSTTRP00000002789/1-290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003426/1-479 ---------- -------MDE KPSTRK---- ---------- ---------- bmy_12196T0/1-447 ---------- -------MDE KPSTRK---- ---------- ---------- BACU006896/1-485 MVSDFKTKKK LSKKCNPLNQ DPTARLERPP VSIDSVDNCH FSKDSEKENM 51 100 ENSP00000353677/1-436 ---------- ---------- ---------- ------GPDF CSLRYGLALI ENSTTRP00000002789/1-290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003426/1-479 ---------- ---------- ---------- ------SPEF CSLRYGLALI bmy_12196T0/1-447 ---------- ---------- ---------- ------IPEF CSLRYGLALI BACU006896/1-485 NKVVDKTEGK KTCTLVEITC SVALIVQLRK GAPRDYVPKF CSLRYGLALI 101 150 ENSP00000353677/1-436 MHFSNFTMIT QRVSLSIAII AMVNTTQQQG LSNASTEGPV ADAFNNSSIS ENSTTRP00000002789/1-290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003426/1-479 MHFSNFTMIT QRVSLSIAII AMVNRTQQPG LFNTSTERPL AFTFNHSNRS bmy_12196T0/1-447 MHFSNFTVIT QRVSLSIAII AMVNSTQQPG LFNASTERPL AFTLNHSNRS BACU006896/1-485 MHFSNFTVIT QRVSLSIAII AMVNSTQQPG LFNASTERPL AFTLNRSNRS 151 200 ENSP00000353677/1-436 IKEFDTK-AS VYQWSPETQG IIFSSINYGI ILTLIPSGYL AGIFGAKKML ENSTTRP00000002789/1-290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003426/1-479 IKEFNTAEVS VYEWSPETQG IIFSSINYGI ILTLIPSGYL AGIFGAKQML bmy_12196T0/1-447 TKEFNSG-AS VYEWSPETQG IIFSSISYGI ILTLIPSGYL AGIFGAKQML BACU006896/1-485 TKEFNSG-AS VYEWSPETQG IIFSSISYGI ILTLIPSGYL AGIFGAKQML 201 250 ENSP00000353677/1-436 GAGLLISSLL TLFTPLAADF GVILVIMVRT VQGMAQGMAW TGQFTIWAKW ENSTTRP00000002789/1-290 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003426/1-479 GAGLLISSLL TLFTPLTADF GVILVIVIRT VQGMAQGMAW TGQFTIWAKW bmy_12196T0/1-447 GAGLLISSLL TLFTPLAADF GVILVIVIRT VQGMAQGMAW TGQFTIWAKW BACU006896/1-485 GAGLLISSLL TLLTPLAADF GVILVIVIRT VQGMAQGMAW TGQFTIWAKW 251 300 ENSP00000353677/1-436 APPLERSKLT TIAGSGSAFG SFIILCVGGL ISQALSWPFI FYIFGSTGCV ENSTTRP00000002789/1-290 ---------- ------AAFG SFIILCVGGL ISQTLGWPFI FYIFGSIGCV ENSBTAP00000003426/1-479 APPLERSKLT SIAGSGAAFG SFIILCVGGL ISQALGWPFI FYIFGSIGCV bmy_12196T0/1-447 APPLERSKLT SIAGSGAAFG SFIILCVGGL ISQALGWPFI FYIFGSIGCV BACU006896/1-485 APPLERSKLT SIAGSGAAFG SFTILCVGGL ISQALGWPFI FYIFGSIGCV 301 350 ENSP00000353677/1-436 CCLLWFTVIY DDPMHHPCIS VREKEHILSS LAQQPSSPGR AVPIKAMVTC ENSTTRP00000002789/1-290 CCLLWFMVIY DDPMHHPCIS VREKNHIMSS LAQQSSSPRR SVPIKAMVRC ENSBTAP00000003426/1-479 CCLLWFTVIY DDPLHHPCIS IREKEHIVSS LAQQSSSPRR SVPIKSMVRC bmy_12196T0/1-447 CCLLWFMVIY DDPMHHPCIS VREKDHIVSS LAQQ------ ---------- BACU006896/1-485 CCLLWFMVIY DDPMHHPCIS VREKDHIVSS LAQQ------ ---------- 351 400 ENSP00000353677/1-436 LPLWAIFLGF FSHFWLCTII LTYLPTYIST LLHVNIRDSG VLSSLPFIAA ENSTTRP00000002789/1-290 LPLWAIFTGF FSHFWLCTII ITYLPTYISS VLHVNIRDSG VLSSLPFIAA ENSBTAP00000003426/1-479 LPLWAIFMGF FSHFWLCTII ITYLPTYISS VLHVNIRDSG VLSSLPFIAA bmy_12196T0/1-447 ---------- ---------- ---------- --------SG VLSSLPFIAA BACU006896/1-485 ---------- ---------- ---------- --------SG VLSSLPFIAA 401 450 ENSP00000353677/1-436 ASCTILGGQL ADFLLSRNLL RLITVRKLFS SLDMQV---- --------SS ENSTTRP00000002789/1-290 SSCTILGGQL ADFLLSRNLL RLITVRKLFS SLGLLLPSLC AXXXXXXXXX ENSBTAP00000003426/1-479 ASCTILGGQL ADFLLSRNLL RLITVRKLFS SLGLLLPSLC AVALPFVASS bmy_12196T0/1-447 SSCTILGGQL ADFLLSRNLL RLITVRKLFS SLGLLLPSLC AVALPFVASS BACU006896/1-485 SSCTILGGQL ADFLLSRNLL RLITVRKLFS SLGLLLPSLC AVALPFVASS 451 500 ENSP00000353677/1-436 WESQGDL--- --GSSQESSL PLPLDSSSV- -RILSLVGGM SFSCLLQSTC ENSTTRP00000002789/1-290 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXYASFLMGI SRGFGLIAGI ENSBTAP00000003426/1-479 YTTTIILLIL IPGTSNLCDS GFIINTLDVA PRYASFLMGI SRGFGLIAGI bmy_12196T0/1-447 YTTTIILLIL IPGTSNLCDS GFIINTLDVA PRILCLDGGM SFSLLLLSTC BACU006896/1-485 YTTTIILLIL IPGTSNLCDS GFIVNTLDVA PR------PL GKKPSHSTSS 501 550 ENSP00000353677/1-436 LAWSFTSRLD KQNFKTGPKR GPLPASE--- ---------- ---------- ENSTTRP00000002789/1-290 ISSTATGFLI SQDSVSGWRN VFFLAAA--- ---------- -VNMFGLVFY ENSBTAP00000003426/1-479 ISSTATGFLI SQDSVSGWRN VFFLAAA--- ---------- -VNMFGLVFY bmy_12196T0/1-447 LAWFFTSHLD KQKSSTGPKR GLLPVSEDIV EDLNVVLTIN FLNIFYLSSF BACU006896/1-485 LMNLINDYRV KPQVA---KH LQLPAGK--- ---------- ---------- 551 600 ENSP00000353677/1-436 ---------- --DIKLQT-- --------- ENSTTRP00000002789/1-290 LTFGQAEIQH WAKERTLSRL --------- ENSBTAP00000003426/1-479 LTFGQAEIQH WAKERTLTRL --------- bmy_12196T0/1-447 FFHILGHRLS SSQFRLHVRF PWGVSKIYR BACU006896/1-485 ----AVEGQS VKGEQVLSRS PSSDTK---