KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:55 2014 Check: 00 .. Name: ENSP00000227322/1-459 Len: 1165 Check: 395 Weight: 1.00 Name: ENSBTAP00000003433/1-459 Len: 1165 Check: 2032 Weight: 1.00 Name: ENSTTRP00000010976/1-459 Len: 1165 Check: 4638 Weight: 1.00 Name: bmy_18241T0/1-395 Len: 1165 Check: 4717 Weight: 1.00 Name: BACU017293/1-1165 Len: 1165 Check: 5579 Weight: 1.00 // 1 50 ENSP00000227322/1-459 MAASGAVEPG PPGAAVAPSP APAPPPAPDH LFRPISAEDE EQQPTEIESL ENSBTAP00000003433/1-459 MSAGGAVEPG LPAAAAAPSA APARDPGPGH LFRPISAEDE EQQPTEIESL ENSTTRP00000010976/1-459 MLASGAVDPG LPAAAAAPSP VQTRQPGTGH LFRPISADDE EQQPTEIESL bmy_18241T0/1-395 MLASGGVDRG LPGAAAAPSP VPARQPGSGH LFRPISADDE EQQPTEIESL BACU017293/1-1165 MLASGAVDPG LPGAAAAPSP VPARQPGPGH LFRPISADDE EQQPTEIESL 51 100 ENSP00000227322/1-459 CMNCYCNGMT RLLLTKIPFF REIIVSSFSC EHCGWNNTEI QSAGRIQDQG ENSBTAP00000003433/1-459 CMNCYRNGMT RLLLTKIPFF REIIVSSFSC EHCGWNNTEI QSAGRIQDQG ENSTTRP00000010976/1-459 CMNCYRNGMT RLLLTEIPFF REIIVSSFSC EHCGWNNTEI QSAGRIQDQG bmy_18241T0/1-395 CMNCYRNGMT RLLLTEIPFF REII------ ---------- ---------- BACU017293/1-1165 CMNCYRNGMT RLLLTEIPFF REIIVSSFSC EHCGWNNTEI QSAGRIQDQG 101 150 ENSP00000227322/1-459 VRYTLSVRAL EDMNREVVKT DSAATRIPEL DFEIPAFSQK GALTTVEGLI ENSBTAP00000003433/1-459 VRYTLTVRAQ EDMDREVVKT DSATTRIPEL DFEIPAFSQK GALTTVEGLI ENSTTRP00000010976/1-459 VRYTLTVRAQ EDMNREVVKT DSATTRIPEL DFEIPAFSQK GALTTVEGLI bmy_18241T0/1-395 ---------- -DMNREVVKT DSATTRIPEL DFEIPAFSQK G--------- BACU017293/1-1165 VRYTLTVRAQ EDMNREVVKT DSATTRIPEL DFEIPAFSQK GALTTVEGLI 151 200 ENSP00000227322/1-459 TRAISGLEQD QPARRANKDA TAERIDEFIV KLKELKQVAS PFTLIIDDPS ENSBTAP00000003433/1-459 SRAISGLEQD QPTRRANEEA VAERIDEFIA KLKELKQVAS PFTLIIDDPS ENSTTRP00000010976/1-459 SRAVSGLELD QPSRRANEEA TAERIDEFIV KLKELKQVAS PFTLIIDDPS bmy_18241T0/1-395 ---------- --------EA MAERIDEFIV KLKELKQVAS PFTLIIDDPS BACU017293/1-1165 SRAVSGLEQD QPTRRANEEA MAERIDEFIV KLKELKQVAS PFTLIIDDPS 201 250 ENSP00000227322/1-459 GNSFVENPHA PQKDDALVIT HYNRTRQQEE MLGLQEEAPA EKPEEEDLRN ENSBTAP00000003433/1-459 GNSFVENPHA PRKDDALVIT HYNRTLQQEE MLGLQAEAPE EKPEEEDIRN ENSTTRP00000010976/1-459 GNSFVENPHA PRKDDALVIT HYNRTLQQEE MLGLQAEEPE EKPEEEDLRN bmy_18241T0/1-395 GNSFVENPYA PRKDDALVIT HYNRTLQQKE KLGLQAEEPE EKPEEEDLRN BACU017293/1-1165 GNSFVENPYA PRKDDALVIT HYNRTLQQEE KLGLQAEEPE EKPEEEDLRN 251 300 ENSP00000227322/1-459 EVLQFSTNCP ECNAPAQTNM KLVQIPHFKE VIIMATNCEN CGHRTNEVKS ENSBTAP00000003433/1-459 EVLQFNTNCP ECNAPAQTNM KLVQIPHFKE VIIMATNCEN CGHRTNEVKS ENSTTRP00000010976/1-459 EVLQFNTNCP ECNAPAQTNM KLVQIPHFKE VIIMATNCEN CGHRTNEVKS bmy_18241T0/1-395 EVLQFNTNCP ECNAPAQTNM KLVEIPHFKE VIIMATNCEN CGHRTNEVKS BACU017293/1-1165 EVLQFNTNCP ECNAPAQTNM KLVQIPHFKE VIIMATNCEN CGHRTNEVKS 301 350 ENSP00000227322/1-459 GGAVEPLGTR ITLHITDASD MTRDLLKSET CSVEIPELEF ELGMAVLGGK ENSBTAP00000003433/1-459 GGAVEPLGTR ITFHITDPSD MTRDLLKSET CSVEIPELEF ELGMAVLGGK ENSTTRP00000010976/1-459 GGAVEPLGTR ITFYITDPSD MTRDLLKSET CSMEIPELEF ELGMAVLGGK bmy_18241T0/1-395 GGAVEPLGTR ITFYITDPSD MTRDLLKSET CSLEIPELEF ELGMAVLGGK BACU017293/1-1165 GGAVEPLGTR ITFYITDPSD MTRDLLKSET CSLEIPELEF ELGMAILGGK 351 400 ENSP00000227322/1-459 FTTLEGLLKD IRELVTKNPF TLGDSSNPGQ TERLQEFSQK MDQIIEGNMK ENSBTAP00000003433/1-459 FTTLEGMLKD IRELVTKNPF TLGDSSSPGQ TEKLQEFSQK LDQILEGILK ENSTTRP00000010976/1-459 FTTLEGILKD IRELVTKNPF TLGDSSSPGR TEKLQEFSQK LNQIIEGNMK bmy_18241T0/1-395 FTTLEGILKD IRELVTKNPF TLGDSSSPGQ TEKLQEFSQK LDQILEGNMK BACU017293/1-1165 FTTLEGILKD IRELVTKNPF TLGDSSSPGQ TEKLQEFSQK LDQILEGNMK 401 450 ENSP00000227322/1-459 AHFIMDDPAG NSYLQNVYAP EDDPEMKVER YKRTFDQNEE LGLNDMKTEG ENSBTAP00000003433/1-459 AHFIMDDPAG NSYLQNVYAP EDDPEMKVEH YKRTFDQNEE LGLNDMKTEG ENSTTRP00000010976/1-459 AHFVMDDPAG NSYLQNVYAP EDDPEMKVEH YNRTFDQNEE LGLNDMKTEG bmy_18241T0/1-395 AHFVMDDPAG NSYLQNVYAP EDDPEMKVEH YKRTFDQNEE LGLNDMKTEG BACU017293/1-1165 AHFVMDDPAG NSYLQNVYAP EDDPEMKVEH YKRTFDQNEE LGLNDMKTEG 451 500 ENSP00000227322/1-459 YEA------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 YET------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 YET------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 YET------- ---------- ---------- ---------- ---------- BACU017293/1-1165 YETASIRLPA FAAAMAAAPP LSKAEYLKRY LSGADAGVDG GPESGRKRRK 501 550 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 KRPKTGGAGG KGMRIVDDDV SWTSMSTTKT EKEEEEDDGD LPVVADFVDE 551 600 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 RPEEVKQMEA FRSSAKWKLL GGHNEDLPSH RHFRHDTPDS SPPRRVHHDT 601 650 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 LDSFPPRRVR HDTLDSSPPR RVCYDTPDSS PPRRVRHDPL DSSPPRTVRH 651 700 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 DPPDSLHPRR VRHDTPDSSP RRVRHDTPDS SPRRVCHDSP DPSPPRRAYH 701 750 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 DSDPSPPRRA RHDSLDPSPI RKPHRHSSGV SPRRARHDTP DPSPPRRAHH 751 800 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 NSSDISPRRR AHNSSPDTAQ PRRTLDSVDT PQLRRAHHNS PDLASNVPHS 801 850 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 LPRTKSSKAP ESSSKTSPHR KGPGPSHLSL PKNSKYEYDA ELSPPRKKQA 851 900 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 KSRFGSKQHD SKGSSPSHRK YHKSSSPRRH QSHMLDSSSY PSDSRKASDS 901 950 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 DLPPPRYKQS SGPRDSDSDL SPPRNRPRHG NSDSDLSPPR RKQRAKSSDS 951 1000 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 DLSPPRRSQP LGKKAAHMYS GAKTGLVLTD IQREQQELKR RNQETMAFEA 1001 1050 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- -----GLAPQ ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- -----GLPAQ ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- -----GLASQ bmy_18241T0/1-395 ---------- ---------- ---------- ---------- -----GLASQ BACU017293/1-1165 EFQYAETVFR DKFGRKRNLK LERLEQRRKA EKDSERDELY AQWGKGLAQR 1051 1100 ENSP00000227322/1-459 R--------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 R--------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 R--------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 R--------- ---------- ---------- ---------- ---------- BACU017293/1-1165 RQQQQNVEDA MKEMQKPLAR YIDDEDLDRM LREKEREGDP MANLIKKNKA 1101 1150 ENSP00000227322/1-459 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003433/1-459 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010976/1-459 ---------- ---------- ---------- ---------- ---------- bmy_18241T0/1-395 ---------- ---------- ---------- ---------- ---------- BACU017293/1-1165 KESKNKKVRP RYSGPAPPPN RFNIWPGYRW DGVDRSNGFE QKRFARLTSK 1151 1200 ENSP00000227322/1-459 ---------- ----- ENSBTAP00000003433/1-459 ---------- ----- ENSTTRP00000010976/1-459 ---------- ----- bmy_18241T0/1-395 ---------- ----- BACU017293/1-1165 KAVEELAYKW SVEDM