KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:55 2014 Check: 00 .. Name: ENSBTAP00000003437/1-499 Len: 500 Check: 7751 Weight: 1.00 Name: ENSP00000406463/1-494 Len: 500 Check: 4224 Weight: 1.00 Name: ENSTTRP00000006255/1-494 Len: 500 Check: 4699 Weight: 1.00 Name: bmy_16695T0/1-456 Len: 500 Check: 6201 Weight: 1.00 Name: BACU007160/1-494 Len: 500 Check: 4577 Weight: 1.00 // 1 50 ENSBTAP00000003437/1-499 MAAAAECDVV MAATEPELLD DEEAKREAES FKEQGNAYYA KKDYNEAYNY ENSP00000406463/1-494 MAAAAECDVV MAATEPELLD DQEAKREAET FKEQGNAYYA KKDYNEAYNY ENSTTRP00000006255/1-494 MAAAAECDVV MAATEPELLD DEEAKREAES FKEQGNAYYA KKDYHEAYNY bmy_16695T0/1-456 MAAAAECDVV MAETEPELLD DEEAKREAES FKEQGNAYYA KKDYNEAYNY BACU007160/1-494 MAAAAECDVV MAETEPELLD DEEAKREAES FKEQGNAYYA KKDYNEAYNY 51 100 ENSBTAP00000003437/1-499 YTKAIDMCPK NASYYGNRAA TLMMLGKFRE ALGDAQQSVR LDDTFVRGHL ENSP00000406463/1-494 YTKAIDMCPK NASYYGNRAA TLMMLGRFRE ALGDAQQSVR LDDSFVRGHL ENSTTRP00000006255/1-494 YTKAIDMCPK NASYYGNRAA TLMMLGKFRE ALGDAQQSVR LDDSFVRGHL bmy_16695T0/1-456 YTKAIDMCPK NASYYGNRAA TLMMLGKFRE ALGDAQQSVR LDDSFVR--- BACU007160/1-494 YTKAIDMCPK NASYYGNRAA TLMMLGKFRE ALGDAQQSVR LDDSFVRGHL 101 150 ENSBTAP00000003437/1-499 REGKCHLSLG NAMAACRSFQ RALELDHKNA QAQQEFKNAN AVIEYEKIAE ENSP00000406463/1-494 REGKCHLSLG NAMAACRSFQ RALELDHKNA QAQQEFKNAN AVMEYEKIAE ENSTTRP00000006255/1-494 REGKCHLSLG NAMAACRSFQ RALELDHKNA QAQQEFKNAN AVLEYEKIAE bmy_16695T0/1-456 ---------- ---------- ---------- -----FKNAN AVIEYEKIAE BACU007160/1-494 REGKCHLSLG NAMAARRSFQ RALELDHKNA QAQQEFKNAN AVIEYEKIAE 151 200 ENSBTAP00000003437/1-499 TDFEKRDFRK VNYNLALAIS F-PLSERMKK IRAVCVCNLH FVEEWPPGQS ENSP00000406463/1-494 TDFEKRDFRK VVFCMDRALE FAPACHRFKI LKAEC---LA MLGRYPEAQS ENSTTRP00000006255/1-494 TDFEKRDFRK VVFCMDRALE YAPACHRFKI LKAEC---LA MLGRYPEAQS bmy_16695T0/1-456 TDFEKRDFRK VVFCMDRALE YAPACHRFKI IKAEC---LA MLGRHPEAQS BACU007160/1-494 TDFEKRDFRK VVFCMDRALE YAPACHRFKI IKAEC---LA MLGRHPEAQS 201 250 ENSBTAP00000003437/1-499 VTSSMTKNES YDCFLYLLSY LCMHLFLWVR KLSTASSSHV LRIPPKKKKA ENSP00000406463/1-494 VASDILRMDS TNADALYVRG LCLY-YEDCI EKAVQFFVQA LRMAPDHEKA ENSTTRP00000006255/1-494 VASDILRMDS TNADALYVRG LCLY-YEDCI EKAVQFFVQA LRMAPDHEKA bmy_16695T0/1-456 VASDILRMDS TNADALYVRG LCLY-YEDCI EKAVQFFVQA LRMAPDHEKA BACU007160/1-494 VASDILRMDS TNADALYVRG LCLY-YEDCI EKAVQFFVQA LRMAPDHEKA 251 300 ENSBTAP00000003437/1-499 CLSECLKNAK ALKAKKEDGN KAFKEGNYKL AYELYTEALG IDPNNIKTNA ENSP00000406463/1-494 CIA-C-RNAK ALKAKKEDGN KAFKEGNYKL AYELYTEALG IDPNNIKTNA ENSTTRP00000006255/1-494 CVA-C-RNAK ALKAKKEDGN KAFKEGNYKL AYELYTEALG IDPNNIKTNA bmy_16695T0/1-456 CVA-C-RNAK ALKAKKEDGN KAFKEGNYKL AYELYTEALG IDPNNIKTNA BACU007160/1-494 CVA-C-RNAK ALKAKKEDGN KAFKEGNYKL AYELYTEALG IDPNNIKTNA 301 350 ENSBTAP00000003437/1-499 KLYCNRGTVN SKLRKLDDAI EDCTNAVKLD DTYIKAYLRR AQCYLDTEQY ENSP00000406463/1-494 KLYCNRGTVN SKLRKLDDAI EDCTNAVKLD DTYIKAYLRR AQCYMDTEQY ENSTTRP00000006255/1-494 KLYCNRGTVN SKLRKLDDAI EDCTNAVKLD DTYIKAYLRR AQCYMDTEQY bmy_16695T0/1-456 KLYCNRGTVN SKLRKLDDAI EDCTNAVKLD DTYIKAYLRR AQCYMDTEQY BACU007160/1-494 KLYCNRGTVN SKLRKLDDAI EDCTNAVKLD DTYIKAYLRR AQCYMDTEQY 351 400 ENSBTAP00000003437/1-499 EEAVRDYEKV YQTEKTKEHK QLLKNAQLEL KKSKRKDYYK ILGVDKNASE ENSP00000406463/1-494 EEAVRDYEKV YQTEKTKEHK QLLKNAQLEL KKSKRKDYYK ILGVDKNASE ENSTTRP00000006255/1-494 EEAVRDYEKV YQTEKTKEHK QLLKNAQLEL KKSKRKDYYK ILGVDKNASE bmy_16695T0/1-456 EEAVRDYEKV YQTEKTKEHK QLLKNAQLEL KKSKRKDYYK ILGVDKNASE BACU007160/1-494 EEAVRDYEKV YQTEKTKEHK QLLKNAQLEL KKSKRKDYYK ILGVDKNASE 401 450 ENSBTAP00000003437/1-499 DEIKKAYRKR ALMHHPDRHS GASAEVQKEE EKKFKEVGEA FTILSDPKKK ENSP00000406463/1-494 DEIKKAYRKR ALMHHPDRHS GASAEVQKEE EKKFKEVGEA FTILSDPKKK ENSTTRP00000006255/1-494 DEIKKAYRKR ALMHHPDRHS GASAEVQKEE EKKFKEVGEA FTILSDPKKK bmy_16695T0/1-456 DEIKKAYRKR ALMHHPDRHS GASAEVQKEE EKKFKEVGEA FTILSDPKKK BACU007160/1-494 DEIKKAYRKR ALMHHPDRHS GASAEVQKEE EKKFKEVGEA FTILSDPKKK 451 500 ENSBTAP00000003437/1-499 TRYDSGQDLD EEGMNMGDFD ANNIFKAFFG GPGGFSFEAS GPGNFFFQFG ENSP00000406463/1-494 TRYDSGQDLD EEGMNMGDFD PNNIFKAFFG GPGGFSFEAS GPGNFFFQFG ENSTTRP00000006255/1-494 TRYDSGQDLD EEGMNMGDFD ANNIFKAFFG GPGGFSFEAS GPGNFFFQFG bmy_16695T0/1-456 TRYDSGQDLD EEGMNMGDFD ANNIFKAFFG GPGGFSFEAS GPGNFFFQFG BACU007160/1-494 TRYDSGQDLD EEGMNMGDFD ANNIFKAFFG GPGGFSFEAS GPGNFFFQFG