KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:00 2014 Check: 00 .. Name: ENSP00000316532/1-984 Len: 1103 Check: 706 Weight: 1.00 Name: ENSBTAP00000003470/1-994 Len: 1103 Check: 190 Weight: 1.00 Name: ENSTTRP00000006922/1-981 Len: 1103 Check: 8933 Weight: 1.00 Name: bmy_02919T0/1-1063 Len: 1103 Check: 3240 Weight: 1.00 Name: BACU013948/1-1083 Len: 1103 Check: 1699 Weight: 1.00 // 1 50 ENSP00000316532/1-984 ---------- --MAPGMSG- RGGAA----- -----LL--- --CLSALL-A ENSBTAP00000003470/1-994 -MRYDETGRT AFLGKQQRG- REQTH----- -----MI--- --PQAQGY-V ENSTTRP00000006922/1-981 ---------- --MAPGMPG- RGGAA----- -----LL--- --CLSALL-A bmy_02919T0/1-1063 MLCCHSNRNE AKAGAGAWGW RSGAAGDRPE GQEVELL--- --QLGGILRG BACU013948/1-1083 MLAAGA---- --WEEEYWG- KGSLE----- -----LIVEG PECHSQ---A 51 100 ENSP00000316532/1-984 HASGRSHPAS PSPPGPQASP VLPVSYRLSH TRLAFFLREA RPPSPAVANS ENSBTAP00000003470/1-994 DASGRSHPAS PSPPGPQASP VLPISYRLSH TRLAFFLREA RPPPPTVANG ENSTTRP00000006922/1-981 HASGRSHPAS PSPPGPQASP VLPVSYRLSH TRLAFFLREV RRTPPTVTNG bmy_02919T0/1-1063 WASGRSHPAS PSPPGPQASP VLPISYRLSH TRLAFFLREA RRTPPTVTNG BACU013948/1-1083 QASGRSHPAS LSPPGPQASP VLPISYRLSH TRLAFFLREA RRTPPTVTNG 101 150 ENSP00000316532/1-984 SLQRSEPFVV FQTKELPVLN VSLGPFSTSQ VVARELLQPS STLDIPERLT ENSBTAP00000003470/1-994 SLQRSEPFVV FQTKELPVLN VSLGPFSTSQ VVARELLQPS STLDIPERLT ENSTTRP00000006922/1-981 SLQRSEPFVV FQTKELPVLN VSLGPFSTSQ VVARELLQPS STLDIPERLT bmy_02919T0/1-1063 SLQRSEPFVV FQTKELPVLN VSLGPFSTSQ VVARELLQPS STLDIPERLT BACU013948/1-1083 SLQRSEPFVV FQTKELPVLN VSLGPFSTSQ VVARELLQPS STLDIPERLT 151 200 ENSP00000316532/1-984 VNWKVRAFIV RSHVPASQPV VQVLFYVAGR DWDDFGVTER LPCVRLHAFR ENSBTAP00000003470/1-994 VSWKVRAFIV HSRVPASQPV AQVLFYVAGR DWDDFGVTER LPCVRLHAFR ENSTTRP00000006922/1-981 VSW-VRAFIV HPRVPASQPV AQVLFYVAGR DWDDFGVTER LPCVRLHAFR bmy_02919T0/1-1063 VSWKVRAFIV RPRVPASQPV AQVLFYVAGR DWDDFGVTER LPCVRLHAFR BACU013948/1-1083 VSWKVRAFIV RPRVPASQPV AQVLFYVAGR DWDDFGVTER LPCVRLHAFR 201 250 ENSP00000316532/1-984 DARE------ ---------- ---------- ---------- ---------- ENSBTAP00000003470/1-994 DARE------ ---------- ---------- ---------- ---------- ENSTTRP00000006922/1-981 DARE------ ---------- ---------- ---------- ---------- bmy_02919T0/1-1063 DAREVKSSCR LSGGLATCLV RAELPLAWFG PPAPAAPPTA RRKSPDGLEP BACU013948/1-1083 DAREVKSSCR LSGGLATCLV RAELPLAWFG PPAPAAPPTA RRKSPDGLEP 251 300 ENSP00000316532/1-984 ---------- ---------- ---------- ---------- ----HPLLRI ENSBTAP00000003470/1-994 ---------- ---------- ---------- ---------- ----HPLLRI ENSTTRP00000006922/1-981 ---------- ---------- ---------- ---------- ----HPLLRI bmy_02919T0/1-1063 EATGESQQAE LYYTLHAPDA SGGCGGTRRG AGPGGGARAE SPTQHPLLRI BACU013948/1-1083 EATGESQQAE LYYTLHAPDA SGGCGGTRRG AGPGGGARAE SPTQHPLLRI 301 350 ENSP00000316532/1-984 GSISLFRPPP RRTLQEHRLD SNLMIRLPDR PLKPGEVLSI LLYLAPNSSS ENSBTAP00000003470/1-994 GSISLFRPPP RRTLQEHRLD SNLMIRLPDR PLKPGEVLSI VLYLAPNSSS ENSTTRP00000006922/1-981 GSISLFRPPP RRTLQEHRLD SNLMIRLPDR PLKPGELLSI LLYLAPNSSS bmy_02919T0/1-1063 GSISLFRPPP RRTLQEHRLD GNLVIRLPDR PLKPGEVLSI LLYLAPNSSS BACU013948/1-1083 GSISLFRAPP RRTLQEHRLD GNLVIRLPDR PLKPGEVLSI LLYLAPNSSS 351 400 ENSP00000316532/1-984 PSSPSVEHFT LRVKAKKGVT LLGTKSRSGQ WHVTSELLTG AKHSTATVDV ENSBTAP00000003470/1-994 PSSPSLEHFT LRVKAKKGVT LLGTKSRSGQ WHVTSELLTG AKHSTATVDV ENSTTRP00000006922/1-981 PSSPSLEHFT LRVKAKKGVT LLGTKSRSGQ WHVTSELLTG AKHSTATVDV bmy_02919T0/1-1063 PSSPSVEHFT LRVKAKKGVT LLGTKSRSGQ WHVTSELLTG AKHSTATVDV BACU013948/1-1083 PSSPSVEHFT LRVKAKKGVT LLGTKSRSGQ WHVTSELLTG AKHSTATVDV 401 450 ENSP00000316532/1-984 AWAQSTPLPP REGQGPLEIL QLDFEMENFT SQSVKRRIMW HIDYRGHGAL ENSBTAP00000003470/1-994 SWAQGTPLPP WEGQGPLEIL QLDFEMENFT SQSVKRRIMW HIDYRGHGAL ENSTTRP00000006922/1-981 SWAQGTPLPL WEDQGPLEIL QLDFEMENFT SQSVKRRIMW HIDYRGHGAL bmy_02919T0/1-1063 SWAQGTPLPL WEDQGPLEIL QLDFEMENFT SQSVKRRIMW HIDYRGHGAL BACU013948/1-1083 SWAQGTPLPL WEEQGPLEIL QLDFEMENFT SQSVKRRIMW HIDYRGHGAL 451 500 ENSP00000316532/1-984 PDLERAVTEL TVIQRDVQAI LPLAMDTEII NTAILTGRTV AIPVKVIAIE ENSBTAP00000003470/1-994 PDLERAVTEL TVIQRDVQAI LPLAMDTEII NTAILTGRTV AIPVKVIAIE ENSTTRP00000006922/1-981 PDL-RAVTEL TGIQRDVQAI LPLAMDTEII NTAILTGRTV AIPVKVIAIE bmy_02919T0/1-1063 PDLERAVTEL TVIQRDVQAI LPLAMDTEII NTAILTGRTV AIPVKVIAIE BACU013948/1-1083 PDLERAVTEL TVIQRDVQAI LPLAMDTEII NTAILTGRTV AIPVKVIAIE 501 550 ENSP00000316532/1-984 VNGLVLDISA LVECESDNED IIKVSSSCDY VFVSGKESRG SMNARVTFRY ENSBTAP00000003470/1-994 VTGLVLDVSA LVECESDNED IIKVSSSCDY VFVSGKESRG SMNARVTFRY ENSTTRP00000006922/1-981 VTNLVLDFSA LVECESDNED IIKVSSSCDY VFVSGKESRG SMNARVTFRY bmy_02919T0/1-1063 VTGLVLDVSA LVECESDNED IIKVSSSCDY VFVSGKESRG SMNARVTFRY BACU013948/1-1083 VTGLVLDVSA LVECESDNED IIKVSSSCDY VFVSGKESRG SMNARVTFRY 551 600 ENSP00000316532/1-984 DVLNAPLEMT VWVPKLPLHI ELSDARLSQV KGWRVPILPD RRSVRESEDE ENSBTAP00000003470/1-994 DVLNAPLEMT VWVPKLPLHI ELSDARLSQV KGWRVPILPD RRSARESEDE ENSTTRP00000006922/1-981 DVLNAPLEMT VWVPKLPLHI ELSDARLSQV KGWRVPILPD RRSARESEDE bmy_02919T0/1-1063 DVLNAPLEMT VWVPKLPLHI ELSDARLSQV KGWRVPILPD RRSARESEDE BACU013948/1-1083 DVLNAPLEMT VWVPKLPLHI ELSDARLSQV KGWRVPILPD RRSARESEDE 601 650 ENSP00000316532/1-984 DEEEEERRQS ASRGCTLQYQ HATLQVFTQF HTTSSEGTDQ VVTMLGPDWL ENSBTAP00000003470/1-994 D-EEEERPQS ASRGCTLQYQ HATLQVFTQF HTTSSEGTDQ VVTMLGPDWL ENSTTRP00000006922/1-981 D-EDEGRRQS ASRGCTLQYQ HATLQVFTQF HTTSAEGTDQ VVTMLGPDWL bmy_02919T0/1-1063 DEEEEERRQS ASRGCTLQYQ HATLQVFTQF HTTSSEGTDQ VVTMLGPDWL BACU013948/1-1083 DEEEEERRQS PSRGCTLQYQ HATLQVFTQF HTTSSEGTDQ VVTMLGPDWL 651 700 ENSP00000316532/1-984 VEVTDLVSDF MRVGDPRVAH MVDSSTLAGL EPGTTPFKVV SPLTEAVLGE ENSBTAP00000003470/1-994 VEVTDLVSDF MRVGDPRVAR MVDSSTLAGL EPGTTPFKVV SPLTESVLGE ENSTTRP00000006922/1-981 VEVTDLVSDF MRVGDPRVAR MVDSSTLAGL EPGTTPFKVV SPLTESVLGE bmy_02919T0/1-1063 VEVTDLVSAF MRVGDPRVAR MVDGSTLAGL EPGTTPFKVV SPLTESVLGE BACU013948/1-1083 VEVTDLVSDF MRVGDPRVAR MVDGSTLAGL EPGTTPFKVV SPLTESVLGE 701 750 ENSP00000316532/1-984 TLLTVTEEKV SITQLQAQVV ASLALSLRPS PGSSHTILAT TAAQQTLSFL ENSBTAP00000003470/1-994 TLLTVTEEKV SITQLQAQVV ASLALSLRPS PGSSHTILAT AAAQQTLSFL ENSTTRP00000006922/1-981 TLLTVTEDKV SITQLQAQVV ASLALSLRPS PGSSHTILAT TAAQQTLSFL bmy_02919T0/1-1063 TLLTVTEEKV SITQLQAQVV ASLALSLRPS PGSSHTIVAT TAAQQTLSFL BACU013948/1-1083 TLLTVTEEKV SITQLQAQVV ASLALSLRPS PGSSHTIVAT TAAQQTLSSL 751 800 ENSP00000316532/1-984 KQEALLSLWL SYSDGTTAPL SLYSPRDYGL LVSSLDEHVA TVTQDRAFPL ENSBTAP00000003470/1-994 KQEALLSLWL SYSDGTTAPL SLYSPRDYGL LVSSLDERVA TVTQDRAFPL ENSTTRP00000006922/1-981 KQEALLSLWL SYSDGTTAPL SLYSPQDYGL LVSSLDKRVA TVTQDRAFPL bmy_02919T0/1-1063 KQ-------- ---------- ---------- -------RVA TVTQDRAFPL BACU013948/1-1083 KQEALLSLWL SYSDGTTAPL SLYSPRDYGL LVSSLDERVA TVTQDRAFPL 801 850 ENSP00000316532/1-984 VVAEAEGSGE LLRAELTIAE SCQKTKRKSV LATTPVGLRV HFGRDEEDPT ENSBTAP00000003470/1-994 VVAEAEGAGE LLRAELTIAE SCQKTKRKSV LATTRVGLRV HFGRDEEDPT ENSTTRP00000006922/1-981 VVAEAEGAGE LLRVELTIAE SCQKTKRKSV LATTPVGLRV HFGREEGDPT bmy_02919T0/1-1063 VVAEAEGAGE LLRAELTIAE SCQKTKRKSV LATTPVGLRV HFGREEGDPT BACU013948/1-1083 VVAEAEGAGE LLRAELTIAE SCQKTKRKSV LATTPVGLRV HFGREEGDPT 851 900 ENSP00000316532/1-984 YDYPGPSQPG PGGGEDEARG AGPPGSALPA PEAPGPGTAS PVVPPTEDFL ENSBTAP00000003470/1-994 YDYPGPSQPG PGGGEDEARG AGPPGTAGPR PEAAGPGTAS PAVPPTEDFL ENSTTRP00000006922/1-981 YDYPGPSQPG PGGGEDEAQG AGPPGTAGSP PEAVGPGTAS PVVPPTEDFL bmy_02919T0/1-1063 YDYPGPSQPG PGGGEDEAQG AGPPGTAGSP PEAVGPGTAS PAVPPTEDFL BACU013948/1-1083 YDYPGPSQPG PGEGEDEAQG AGPPGTARSP PEAVGPGTAS PAVPPTEDFL 901 950 ENSP00000316532/1-984 PLPTGFLQVP RGLTDLEIGM YALLGVFCLA ILVFLINCIV FVLRYRHKRI ENSBTAP00000003470/1-994 PLPTGFLQMP RGLTDLEIGM YALLGVFCLA ILVFLINCIV FVLRYRHKRI ENSTTRP00000006922/1-981 PLPTGFLQMP RGLTDLEIGM YALLGVFCLA ILVFLINCIV FVLRYRHKRI bmy_02919T0/1-1063 PLPTGFLQMP RGLTDLEIGM YALLGVFCLA ILVFLINCIV FVLRYRHKRI BACU013948/1-1083 PLPTGFLQMP RGLTDLEIGM YALLGVFCLA ILVFLINCIV FVLRYRHKRI 951 1000 ENSP00000316532/1-984 PPEGQTSMDH SHHWVFLGNG QPLRVQGELS PPAGNPLETV PAFCHGDHHS ENSBTAP00000003470/1-994 PPEGQTSMDH SHHWVFLGNG QPLRVQGELS PPASNPMETV PACCHGDHHS ENSTTRP00000006922/1-981 PPEGQTSMDH SHHWVFLGNG QPLRGQGELS PPASNPLEAV PACCHGDHHS bmy_02919T0/1-1063 PPEGQTSMDH SHHWVFLGNG QPLRGQGELS PPANNPMETV PACCHGDHHS BACU013948/1-1083 PPEGQTSMDH SHHWVFLGNG QPLRGQGELS PPASNPMETV PACCHGDHHS 1001 1050 ENSP00000316532/1-984 SGSSQTSVQS QVHGRGDGSS GGSARDQAED PASSPTSKRK RVKFTTFTTL ENSBTAP00000003470/1-994 SGSSQTSVQS QVHGRGDGSS GGSARDQAED PASSPTSKRK RVKFTTFTTL ENSTTRP00000006922/1-981 SGSSQSSVQS QVHGRGDGSS GGSARDQTED PASSPTSKRK RVKFTTFTAL bmy_02919T0/1-1063 SGSSQTSVQS QVHGRGDGSS GGSARDQAED PASSPTSKRK RVKFTTFTTL BACU013948/1-1083 SGSSQTSVQS QVHGRGDGSS GGSARDQTED PASSPTSKRK RVKFTTFTTL 1051 1100 ENSP00000316532/1-984 PSEELAYDSV PAGEEDEEEE EDLGWGCPDV AGPTRPTAPP DLHNYMRRIK ENSBTAP00000003470/1-994 PSEELAYDSV PAGEEDEEDE EDLGWGCPDV TGTTRPAPPP DLHNYMRRIK ENSTTRP00000006922/1-981 PSEGLAYDSV PAGEEDEEDE EALGWGCPEA AGTARPTPPP DLHNYRRRVK bmy_02919T0/1-1063 PSEELAYDSV PAGEEDEEDE EDLGWGCPDV AGAARPTPPP DLHNYMRRIK BACU013948/1-1083 PSEELAYDSV PAGEEDEEDE EDLGWGCPDV AGAARPTPTP DLHNYMRRIK 1101 1150 ENSP00000316532/1-984 EIA ENSBTAP00000003470/1-994 EIA ENSTTRP00000006922/1-981 EMA bmy_02919T0/1-1063 EIA BACU013948/1-1083 EIA