KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:01 2014 Check: 00 .. Name: ENSTTRP00000014340/1-778 Len: 853 Check: 7639 Weight: 1.00 Name: ENSP00000370517/1-784 Len: 853 Check: 2122 Weight: 1.00 Name: ENSBTAP00000003472/1-791 Len: 853 Check: 2622 Weight: 1.00 Name: bmy_02405T0/1-580 Len: 853 Check: 9899 Weight: 1.00 Name: BACU020598/1-729 Len: 853 Check: 2259 Weight: 1.00 // 1 50 ENSTTRP00000014340/1-778 MGDHDVSPNP KGSFRKFLEQ LSGAGKAIGV LTSGGDAQXX XXXXXXXXXX ENSP00000370517/1-784 -MDADDSRAP KGSLRKFLEH LSGAGKAIGV LTSGGDAQGM NAAVRAVVRM ENSBTAP00000003472/1-791 MDGHDSPQTP KGSLRKFLEQ LSGAGKAIGV LTSGGDAQGM NAAVRAVVRM bmy_02405T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU020598/1-729 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000014340/1-778 XXXXXXXXXX XXXGYQGMVD GGSNIVEADW ESVSSILQVG GTIIGSARCK ENSP00000370517/1-784 GIYVGAKVYF IYEGYQGMVD GGSNIAEADW ESVSSILQVG GTIIGSARCQ ENSBTAP00000003472/1-791 GIYVGAKVYF IYEGYQGMVD GGSNIVEADW ESVSSILQVG GTIIGSARCQ bmy_02405T0/1-580 ---------- -------MVD GGSNIVEADW ESVSSILQVG GTIIGSARCK BACU020598/1-729 ---------- --QGYQGMVD GGSNIVEADW ESVSSILQVG GTIIGSARCK 101 150 ENSTTRP00000014340/1-778 DFRSREGRLK AAHNLLQLGI TNLCVIGGDG SLTGANIFRK EWSGLLEELA ENSP00000370517/1-784 AFRTREGRLK AACNLLQRGI TNLCVIGGDG SLTGANLFRK EWSGLLEELA ENSBTAP00000003472/1-791 DFRTREGRLK AACNLVQLGI TSLCVIGGDG SLTGAHIFQT EWSGLLEELA bmy_02405T0/1-580 DFRSREGRLK AAHNLVQLGI TNLCVIGGDG SLTGANIFRK EWSGLLEELA BACU020598/1-729 DFRSREGRLK AAHNLVQLGI TNLCVIGGDG SLTGANIFRK EWSGLLEELA 151 200 ENSTTRP00000014340/1-778 REGKINTEEV QKHGYLNVVG MVGSIDNDFC GTDMTIGTDS ALHRIIEVVD ENSP00000370517/1-784 RNGQIDKEAV QKYAYLNVVG MVGSIDNDFC GTDMTIGTDS ALHRIIEVVD ENSBTAP00000003472/1-791 RDGKISTEQV QKHGHLNVVG MVGSIDNDFC GTDMTIGTDS ALHRIIEVVD bmy_02405T0/1-580 REGKINTEEV QKHGYLNVVG MVGSIDNDFC GTDMTIGTDS ALHRIIEVVD BACU020598/1-729 REGKISMEEV EKHGYLNVVG MVGSIDNDFC GTDMTIGTDS ALHRIIEVVD 201 250 ENSTTRP00000014340/1-778 AIMTTAQSHQ RTFVLEVMGR HCG------- ---------- ---------- ENSP00000370517/1-784 AIMTTAQSHQ RTFVLEVMGR HCG------- ---------- ---------- ENSBTAP00000003472/1-791 AIMTTAQSHQ RTFVLEVMGR HCG------- ---------- ---------- bmy_02405T0/1-580 AIMTTAQSHQ RTFVLEVMGR HCGYVRADAT GMERTPSTVP AGPRTLARRC BACU020598/1-729 AIMTTAQSHQ RTFVLEVMGR HCG------- ---------- ---------- 251 300 ENSTTRP00000014340/1-778 ---------- ---------- ---------- -----YLALV SALACGADWV ENSP00000370517/1-784 ---------- ---------- ---------- -----YLALV SALACGADWV ENSBTAP00000003472/1-791 ---------- ---------- ---------- -----YLALV SALACGADWV bmy_02405T0/1-580 QEGFPRSQRP PVCRGRPXAR GARRRPTRSL LSPCRYLALV SALACGADWV BACU020598/1-729 ---------- ---------- ---------- -----YLALV SALACGADWV 301 350 ENSTTRP00000014340/1-778 FLPESPPEEG WQENMCIKLS ENRARKKRLN IIIVAEGAID TQNKAITSEQ ENSP00000370517/1-784 FLPESPPEEG WEEQMCVKLS ENRARKKRLN IIIVAEGAID TQNKPITSEK ENSBTAP00000003472/1-791 FLPESPPEEG WQENMCIKLS ENRARKKRLN IIIVAEGAID TQNKPITSEQ bmy_02405T0/1-580 FLPESPPEEG WQENMCIKLS ENRARKKRLN IIIVAEGAID TQNKPITSEQ BACU020598/1-729 FLPESPPEEG WQENMCIKLS ENRARKKRLN IIIVAEGAID TQNKPITSEQ 351 400 ENSTTRP00000014340/1-778 IKELVVTQLG YDTRVTILGH VQRGGTPSAF DRILASRMGV EAVVAL--AT ENSP00000370517/1-784 IKELVVTQLG YDTRVTILGH VQRGGTPSAF DRILASRMGV EAVIALLEAT ENSBTAP00000003472/1-791 IKELVVTQLG YDTRVTILGH VQRGGTPSAF DRILASRMGV EAVVALLQAT bmy_02405T0/1-580 IKELVVTQLA YDTRVTILGH VQRGGTPSAF DRILASRMGV EAVVALLQAT BACU020598/1-729 IKELVVTQLA YDTRVTILGH VQRGGTPSAF DRILASRMGV EAVVALLQAT 401 450 ENSTTRP00000014340/1-778 PETPACVVSL SGNQAVRLPL MECVQMTQEV QKAMDERRFK DAVQLRGRSF ENSP00000370517/1-784 PDTPACVVSL NGNHAVRLPL MECVQMTQDV QKAMDERRFQ DAVRLRGRSF ENSBTAP00000003472/1-791 PETPACVVSL SGNQAVRLPL MECVQMTQEV QKAMDERRFK DAVRLRGRSF bmy_02405T0/1-580 PETPACVVSL SGNQAVRLPL MECVQMTQEV QKAMDERRFK DAVRLRGRSF BACU020598/1-729 PETPACVVSL SGNQAVRLPL MECVQMTQEV QKAMDERRFK DAVRLRGRSF 451 500 ENSTTRP00000014340/1-778 ENNLNTYKRL AIKLPDSQIR KSNCNVGIVN VGAPAAGMNA AVRAAVRVGI ENSP00000370517/1-784 AGNLNTYKRL AIKLPDDQIP KTNCNVAVIN VGAPAAGMNA AVRSAVRVGI ENSBTAP00000003472/1-791 ENNLNTYKRL AIKLPDSEIP KSNCNVGVVN VGAPAAGMNA AVRAAVRVGI bmy_02405T0/1-580 ENNLNTYKRL AIKLPDSQIP KSNCNVGIVN VGAPAAGMNA AVRAAVRVGI BACU020598/1-729 ENNLNTYKRL AIKLPDSQIP KSNCNVGVVN VGAPAAGMNA AVRAAVRVGI 501 550 ENSTTRP00000014340/1-778 SDGHKVFAVY DGFEGFAKGQ XXXXXXXXXX XXXXXXXXXX XXXXTLPGKY ENSP00000370517/1-784 ADGHRMLAIY DGFDGFAKGQ IKEIGWTDVG GWTGQGGSIL GTKRVLPGKY ENSBTAP00000003472/1-791 SEGHKMFAVY DGFEGFAKGQ IKEIGWGDVG GWTGQGGSIL GTKRTLPGKY bmy_02405T0/1-580 ADGHKVFAVY DGFEGFAKGQ IKEIGWADVG GWTGQGGSIL GTKRTLPGKY BACU020598/1-729 ADGHKVFAVY DGFEGFAKGQ IKEIGWADVG GWTGQGGSIL GTKRTLPGKY 551 600 ENSTTRP00000014340/1-778 LEDIAAQMHT HGINALLIIG GFEXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000370517/1-784 LEEIATQMRT HSINALLIIG GFEAYLGLLE LSAAREKHEE FCVPMVMVPA ENSBTAP00000003472/1-791 LEDIAAQMRT HGISALLIIG GFEAYLGLLE LLAARQKHEE FCVPMVMVPA bmy_02405T0/1-580 LEDIAAQMRI HGINALLMIG GFEAYLGLLE LSAAREKHKE FCVPMVMVPA BACU020598/1-729 LEDIAAQMRI HGINALLMIG GFEAYLGLLE LSAAREKHKE FCVPMVMVPA 601 650 ENSTTRP00000014340/1-778 XXXXXXXXXX XXXXXXXXXX XXXXTCDRIK QSASGTKRRV FIIETMGGYC ENSP00000370517/1-784 TVSNNVPGSD FSIGADTALN TITDTCDRIK QSASGTKRRV FIIETMGGYC ENSBTAP00000003472/1-791 TVSNNVPGSD FSIGADTALN TITDTCDRIK QSASGTKRRV FIIETMGGFC bmy_02405T0/1-580 TVSNNVPGSD FSIGADTALN TITD------ ---------- ---------- BACU020598/1-729 TVSNNVPGSD FSIGADTALN TITDTCDRIK QSASGTKRRV FIIETMGGYC 651 700 ENSTTRP00000014340/1-778 GYLANMGALA AGADA-YIFE EPFDIRDLQS NVEH-TEKMK TTIQRGLVLR ENSP00000370517/1-784 GYLANMGGLA AGADAAYIFE EPFDIRDLQS NVEHLTEKMK TTIQRGLVLR ENSBTAP00000003472/1-791 GYLANMGGLA AGADAAYIFE EPFDIRDLQS NVEHLTEKMK TSIQRGLVLR bmy_02405T0/1-580 ---VSVGSRA GATDT----- ---------- ---------- ---------- BACU020598/1-729 GYLANMGALA AGADAAYIFE EPFDIRDLQS NVEHLTEKMK TTIQRGLVLR 701 750 ENSTTRP00000014340/1-778 NESCSENYTT DFIYQLYSEE GKGVFDCRKN VLGHMQQGGA PSPFDRNFGT ENSP00000370517/1-784 NESCSENYTT DFIYQLYSEE GKGVFDCRKN VLGHMQQGGA PSPFDRNFGT ENSBTAP00000003472/1-791 NESCSENYTT DFIYQLYSEE GKGVFDCRKN VLGHMQQGGA PSPFDRNFGT bmy_02405T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU020598/1-729 NESCSENYTT DFIYQLYSEE GKGVFDCRKN VLGHMQQGGA PSPFDRNFGT 751 800 ENSTTRP00000014340/1-778 KISARAMQWI SAKLKEPAGR GRRFVSDDSV CVLGISKRNL LFQPVAELKE ENSP00000370517/1-784 KISARAMEWI TAKLKEARGR GKKFTTDDSI CVLGISKRNV IFQPVAELKK ENSBTAP00000003472/1-791 KISARAMQWI SSKLRESVGK GKKFLSEDCV CVLGISKRTL LFQPVAELKK bmy_02405T0/1-580 ---------- ------NPGR LARF------ ---------- -YLP------ BACU020598/1-729 KISARAMQWI STKLKESAGR GKRFVSDDSV CVLGISKRNL LFQPVAELKK 801 850 ENSTTRP00000014340/1-778 ETDFVHRIPK EQWWLKLRPL MKILAKYKAS FEVSDAGPLE PMQP------ ENSP00000370517/1-784 QTDFEHRIPK EQWWLKLRPL MKILAKYKAS YDVSDSGQLE HVQPWSV--- ENSBTAP00000003472/1-791 ETDFEHRIPK EQWWLKLRPL MKILAKYKVS FEVSDASQLE PVQPRGPEEP bmy_02405T0/1-580 ---------- ---------- ---------- ---------- ---------- BACU020598/1-729 ETDFEHRIPK EQWWLKLRPL MKILAKYKAS FEVSDAGQLE PVQPRGPEEP 851 900 ENSTTRP00000014340/1-778 --- ENSP00000370517/1-784 --- ENSBTAP00000003472/1-791 AAI bmy_02405T0/1-580 --- BACU020598/1-729 ATI