KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:01 2014 Check: 00 .. Name: BACU002106/1-640 Len: 756 Check: 208 Weight: 1.00 Name: ENSBTAP00000003476/1-755 Len: 756 Check: 6056 Weight: 1.00 Name: ENSTTRP00000007834/1-735 Len: 756 Check: 9433 Weight: 1.00 Name: bmy_15591T0/1-724 Len: 756 Check: 9499 Weight: 1.00 Name: ENSP00000262891/1-752 Len: 756 Check: 695 Weight: 1.00 // 1 50 BACU002106/1-640 --MSSRTALA PGNDRNSDTH GTLGIGRSSD KGPSWSSRSL GARCRNSIAS ENSBTAP00000003476/1-755 MLAGWTGAAR HSRSVSPTQH GTLGSGRSSD KGPSWSSRSL GARCRNSIAS ENSTTRP00000007834/1-735 ---------- ---------H GTLGIGRSSD KGPSWSSRSL GARCRNSIAS bmy_15591T0/1-724 --MSSRTALA PGNDRNSDTH GTLGIGRSSD KGPSWSSRSL GARCRNSIAS ENSP00000262891/1-752 --MSSRTVLA PGNDRNSDTH GTLGSGRSSD KGPSWSSRSL GARCRNSIAS 51 100 BACU002106/1-640 CPEEQPHVGN YRLLRTIGKG NFAKVKLARH ILTGREVAIK IIDKTQLNPS ENSBTAP00000003476/1-755 CPEEQPHVGN YRLLRTIGKG NFAKVKLARH ILTGREVAIK IIDKTQLNPS ENSTTRP00000007834/1-735 CPEEQPHVGN YRLLRTIGKG NFAKVKLARH ILTGREVAIK IIDKTQLNPS bmy_15591T0/1-724 CPEEQPHVGN YRLLRTIGKG NFAKVKLARH ILTGREVAIK IIDKTQLNPS ENSP00000262891/1-752 CPEEQPHVGN YRLLRTIGKG NFAKVKLARH ILTGREVAIK IIDKTQLNPS 101 150 BACU002106/1-640 SLQKLFREVR IMKGLNHPNI VKLFEVIETE KTLYLVMEYA SAGEVFDYLV ENSBTAP00000003476/1-755 SLQKLFREVR IMKGLNHPNI VKLFEVIETE KTLYLVMEYA SAGEVFDYLV ENSTTRP00000007834/1-735 SLQKLFREVR IMKGLNHPNI VKLFEVIETE KTLYLVMEYA SAGEVFDXXX bmy_15591T0/1-724 SLQKLFREVR IMKGLNHPNI VKLFEVIETE KTLYLVMEYA SAGEVFDYLV ENSP00000262891/1-752 SLQKLFREVR IMKGLNHPNI VKLFEVIETE KTLYLVMEYA SAGEVFDYLV 151 200 BACU002106/1-640 SHGRMKEKEA RAKFRQIVSA VHYCHQKNIV HRDLKAENLL LDAEANIKIA ENSBTAP00000003476/1-755 SHGRMKEKEA RAKFRQIVSA VHYCHQKNIV HRDLKAENLL LDAEANIKIA ENSTTRP00000007834/1-735 XXXXXXXXXX XXXXXXIVSA VHYCHQKNIV HRDLKAENLL LDAEANIKIA bmy_15591T0/1-724 SHGRMKEKEA RAKFRQIVSA VHYCHQKNIV HRDL------ ---------- ENSP00000262891/1-752 SHGRMKEKEA RAKFRQIVSA VHYCHQKNIV HRDLKAENLL LDAEANIKIA 201 250 BACU002106/1-640 DFGFSNEFTL GSKLDTFCGS PPYAAPELFQ GKKYDGPEVD IWSLGVILYT ENSBTAP00000003476/1-755 DFGFSNEFTL GSKLDTFCGS PPYAAPELFQ GKKYDGPEVD IWSLGVILYT ENSTTRP00000007834/1-735 DFGFSNEFTL GSKLDTFCGS PPYAAPELFQ GKKYDGPEVD IWSLGVILYT bmy_15591T0/1-724 ---------- --KLDTFCGS PPYAAPELFQ GKKYDGPEVD IWSLGVILYT ENSP00000262891/1-752 DFGFSNEFTL GSKLDTFCGS PPYAAPELFQ GKKYDGPEVD IWSLGVILYT 251 300 BACU002106/1-640 LVSGSLPFDG HNLKELRERV LRGKYRVPFY MSTDCESILR RFLVLNPAKR ENSBTAP00000003476/1-755 LVSGSLPFDG HNLKELRERV LRGKYRVPFY MSTDCESILR RFLVLNPAKR ENSTTRP00000007834/1-735 LVSGSLPFDG HNLKELRERV LRGKYRVPFY MSTDCESILR RFLVLNPAKR bmy_15591T0/1-724 LVSGSLPFDG HNLKELRERV LRGKYRVPFY MSTDCESILR RFLVLNPAKR ENSP00000262891/1-752 LVSGSLPFDG HNLKELRERV LRGKYRVPFY MSTDCESILR RFLVLNPAKR 301 350 BACU002106/1-640 CTLEQIMKDK WINIGYEGEE LKPYTEPEED FGDTKRIEVM VGMGYTREEI ENSBTAP00000003476/1-755 CTLEQIMKDK WINIGYEGEE LKPYTEPEED FGDTKRIEVM VGMGYTREEI ENSTTRP00000007834/1-735 CTLEQIMKDK WINIGYEGEE LKPYTEPEED FGDTKRIEVM VGMGYTREEI bmy_15591T0/1-724 CTLEQIMKDK WINIGYEGEE LKPYTEPEED FGDTKRIEVM VGMGYTREEI ENSP00000262891/1-752 CTLEQIMKDK WINIGYEGEE LKPYTEPEED FGDTKRIEVM VGMGYTREEI 351 400 BACU002106/1-640 KEALTSQKYN EVTATYLLLG RKTEEGGDRG TPGLALARVR APSDTTNGTS ENSBTAP00000003476/1-755 KEALTSQKYN EVTATYLLLG RKTEEGGDRG APGLALARVR APSDTTNGTS ENSTTRP00000007834/1-735 KEALTSQKYN EVTATYLLLG RKTEEGGDRG TPGLALARVR APSDTTNGTS bmy_15591T0/1-724 KEALTSQKYN EVTATYLLLG RKTEEGGDRG TPGLALARVR APSDTTNGTS ENSP00000262891/1-752 KESLTSQKYN EVTATYLLLG RKTEEGGDRG APGLALARVR APSDTTNGTS 401 450 BACU002106/1-640 SSKGTSHSKG QRSSSSTYHR QRRHSDFCGP SPAPLHPKRS PTSTGEAELK ENSBTAP00000003476/1-755 SSKGTSHSKG QRSSSSTYHR QRRHSDFCGP SPTPLHPKRS PTSTGEAELK ENSTTRP00000007834/1-735 SSKGTSHSKG QRSSSSTYHR QRRHSDFCGP SPAPLHPKRS PTSTGEAELK bmy_15591T0/1-724 SSKGTSHSKG QRSSSSTYHR QRRHSDFCGP SPAPLHPKRS PTSTGEAELK ENSP00000262891/1-752 SSKGTSHSKG QRSSSSTYHR QRRHSDFCGP SPAPLHPKRS PTSTGEAELK 451 500 BACU002106/1-640 EERLPGRKAS CSAAGSGSRG LPPSSPMVSS AHNPNKAEIP ERRKDSTSTP ENSBTAP00000003476/1-755 EERLPGRKAS CSAAGSGSRG LPPSSPMVSS AHNPNKAEIP ERRKDSTSTP ENSTTRP00000007834/1-735 EERLPGRKAS CSAAGSGSRG LPPSSPMVSS AHNPNKAEIP ERRKDSTSTP bmy_15591T0/1-724 EERLPGRKAS CSAAGSGSRG LPPSSPMVSS AHNPNKAEIP ERRKDSTSTP ENSP00000262891/1-752 EERLPGRKAS CSTAGSGSRG LPPSSPMVSS AHNPNKAEIP ERRKDSTSTP 501 550 BACU002106/1-640 NNLPPSMMTR RNTYVCTERP GAERPSLLPN GKEN-----R V--------T ENSBTAP00000003476/1-755 NNLPPSMMTR RNTYVCTERP GAERPSLLPN GKENSSGTPR VPPASPSSHS ENSTTRP00000007834/1-735 NNLPPSMMTR RNTYVCTERP GAERPSLLPN GKENSSGTPR VPPASPSSHS bmy_15591T0/1-724 NNLPPSMMTR RNTYVCTERP GAERPSLLPN GKENSSGTPR VPPASPSSHS ENSP00000262891/1-752 NNLPPSMMTR RNTYVCTERP GAERPSLLPN GKENSSGTPR VPPASPSSHS 551 600 BACU002106/1-640 LDPSKRQNSN RCVSGASLPQ ---------- -------GSK ISKSPPPSAF ENSBTAP00000003476/1-755 LAPPSGERS- RLARGSTIRS TFHGGQVRDR RAGGGGYGNA FKNYTPVSPT ENSTTRP00000007834/1-735 LAPPSGERS- RLARGSTVRS TFHGGQVRDR RAGGGA-GGG VQNGPPASPT bmy_15591T0/1-724 LAPPSGERS- RLARGSTIRS TFHGGQVRDR RAGGGA-GGG VQNGPPASPT ENSP00000262891/1-752 LAPPSGERS- RLARGSTIRS TFHGGQVRDR RAGGGG-GGG VQNGPPASPT 601 650 BACU002106/1-640 ---------T GSASLSACLT CVRAWREGAL VTDEPERIGG PEVT------ ENSBTAP00000003476/1-755 LAHEATPLPT GRPRPTTNLF TKLTSKLTRR VTDEPERIGG PEVTSCHLPW ENSTTRP00000007834/1-735 LAHEAAPLPT GRPRPTTNLF TKLTSKLTRR VTDEPERIGG PEVTSCHLPW bmy_15591T0/1-724 LAHEATPLPT GRPRPTTNLF TKLTSKLTRR VTDEPERIGG PEVTSCHLPW ENSP00000262891/1-752 LAHEAAPLPA GRPRPTTNLF TKLTSKLTRR VADEPERIGG PEVTSCHLPW 651 700 BACU002106/1-640 ---------- ---------- -RPLDGAQAS SSSSKANF-L KCPYDPPF-- ENSBTAP00000003476/1-755 DQTETAPRLL RFPWSVKLTS SRPPEALMAA LRQATAAARC RCRQPQPFLL ENSTTRP00000007834/1-735 DQTETAPRLL RFPWSVKLTS SRPPEALMAA LRQATAAARC RCRQPQPFLL bmy_15591T0/1-724 DQTETAPRLL RFPWSVKLTS SRPPEALMAA LRQATAAARC RCRQPQPFLL ENSP00000262891/1-752 DQTETAPRLL RFPWSVKLTS SRPPEALMAA LRQATAAARC RCRQPQPFLL 701 750 BACU002106/1-640 -----SAGSS YP-------- ---PPPP--- ---------- ---------- ENSBTAP00000003476/1-755 ACLHGGAGGP EPLSHFEVEV CQLPRPGLRG VLFRRVAGTA LAFRTLVTRI ENSTTRP00000007834/1-735 ACLHGGAGGP EPLSHFEVEV CQLPRPGLRG VLFRRVAGTA LAFRTLVTRI bmy_15591T0/1-724 ACLHGGAGGP EPLSHFEVEV CQLPRPGLRG VLFRRVAGTA LAFRTLVTRI ENSP00000262891/1-752 ACLHGGAGGP EPLSHFEVEV CQLPRPGLRG VLFRRVAGTA LAFRTLVTRI 751 800 BACU002106/1-640 ------ ENSBTAP00000003476/1-755 SNDLEL ENSTTRP00000007834/1-735 SNDLEL bmy_15591T0/1-724 SNDLEL ENSP00000262891/1-752 SNDLEL