KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:04 2014 Check: 00 .. Name: ENSP00000439182/1-1022 Len: 1116 Check: 8568 Weight: 1.00 Name: ENSBTAP00000003490/1-1044 Len: 1116 Check: 2044 Weight: 1.00 Name: ENSTTRP00000006059/1-1028 Len: 1116 Check: 5133 Weight: 1.00 Name: bmy_08283T0/1-985 Len: 1116 Check: 9273 Weight: 1.00 Name: BACU008379/1-902 Len: 1116 Check: 9218 Weight: 1.00 // 1 50 ENSP00000439182/1-1022 ---------- ---------- ---------- ---------- --MEGALTAR ENSBTAP00000003490/1-1044 ---------- ---------- ---MELLHQR KEEVRRKHIR LHVEGALTAR ENSTTRP00000006059/1-1028 ---------- ---------- ---------- --------IR LHMESALTAR bmy_08283T0/1-985 FREHHRNIET SVVRNISLAE ILRHSITGPK KEEAGRKHIR LHMEGALTAR BACU008379/1-902 ---------- ---------- ---------- ---------- --MEGALTAR 51 100 ENSP00000439182/1-1022 DKVGVQDFVL LDAYTSESAF VDNLRKRFSE NLIYTYIGTL LVSVNPYQEL ENSBTAP00000003490/1-1044 DKVGVQDFVL LDAYTSESAF LDNLRKRFSE NLIYTYIGTL LVSVNPYQEL ENSTTRP00000006059/1-1028 DKVGVQDFVL LDAYTSESAF LDNLRKRFSE NLIYTYIGTL LVSVNPYQEL bmy_08283T0/1-985 DKVGVQDFVL LDAYTSESAF LDNLRKRFSE NLIYTYIGTL LVSVNPYQEL BACU008379/1-902 DKVGVQDFVL LDAYTSESAF LDNLRKRFSE NLIYTYIGTL LVSVNPYQEL 101 150 ENSP00000439182/1-1022 GIYTVSQMEL YQGVNFFELP PHVYAIADNA YRMMCAELNN HFILISGESG ENSBTAP00000003490/1-1044 GIYTLSQMEL YQGVNFFELP PHVYAIADNA YRMMCSELNN HFILISGESG ENSTTRP00000006059/1-1028 GIYTVSQMEL YQGVNFFELP PHVYAIADNA YRMMCSELNN HFILISGESG bmy_08283T0/1-985 GIYTVSQMEL YQGVNFFELP PHVYAIADNA YRMMCSELNN HFILISGESG BACU008379/1-902 GIYTVSQMEL YQGVNFFELP PHVYAIADNA YRMMCSELSN HFILISGESG 151 200 ENSP00000439182/1-1022 AGKTEASKKI LEYFAVTCPM TQSLQIARDR LLFSNPVLEA FGNARTLRND ENSBTAP00000003490/1-1044 AGKTEASKKI LQYFAVTCPM TESLQIARDR LLFSNPVLEA FGNAKTLRND ENSTTRP00000006059/1-1028 AGKTEASKKI LQYFAVTCPM TESLQIARDR LLLSNPVLEA FGNAKTLRND bmy_08283T0/1-985 AGKTEASKKI LQYFAVTCPM TESLQIARDR LLLSNPVLE- ---------- BACU008379/1-902 AGKTEASKKI LQYFAVTCPM TESLQIARDR LLLSNPVLEA FGNAKTLRND 201 250 ENSP00000439182/1-1022 NSSRFGKYMD IQFDFQGIPV GGHIISYLIE KSRVVYQNEG ERNFHIFYQL ENSBTAP00000003490/1-1044 NSSRFGKYMD IQFDFKGIPV GGHIISYLIE KSRVVYQNQG ERNFHIFYQL ENSTTRP00000006059/1-1028 NSSRFGKYMD IQFDFKGIPV GGHIISYLIE KSRVVYQNQG ERNFHIFYQL bmy_08283T0/1-985 ---------- ------GIPV GGHIISYLIE KSRVVYQNQG ERNFHIFYQL BACU008379/1-902 NSSRFGKYMD IQFDFK---- ---------- ---------- ---------- 251 300 ENSP00000439182/1-1022 LAGGEEERLS YLGLERDPQL YKYLSQGHCA KESSISDKND WKTVSNAFSV ENSBTAP00000003490/1-1044 LEGGEEELLA YLGLERDPQL YKYLSQGRCA KESSVNDKND WKTVSNAFSV ENSTTRP00000006059/1-1028 LEGGEEELLA YLGLERDPQL YKYLSQGHCA KESSINDKND WKTVSHAFSV bmy_08283T0/1-985 LEGGEEELLA YLGLERDPQL YKYLSQGHCA KESSINDKND WKTVSSAFSV BACU008379/1-902 ---------- ---------- ------GHCA KESSINDKND WKTVSNAFSV 301 350 ENSP00000439182/1-1022 IDFTEADLEN LFGIIASVLH LGNIGFEEDD QGCATIPDTH EIKWIAKLLG ENSBTAP00000003490/1-1044 IDFTKDDLEN LFGIIASVLH LGNIGFEENQ QGCASVPDTH EIKWIAKLLG ENSTTRP00000006059/1-1028 IDFTEDDLEN LYGIIASVLH LGNICFEANQ QGCACIPDTH EIKWIAKLLG bmy_08283T0/1-985 IDFTEDDLEN LFGIIASVLH LGNICFEENQ QGCASIPDTH EIKRIAKLLG BACU008379/1-902 IDFTEDDLEN LFGIIASVLH LGNICFEENQ QGWASIPDTH EIKRIGKLLG 351 400 ENSP00000439182/1-1022 VHPSVLLEAL THRKIEAKTE EVICPLTLEL SVYARDAMAK AVYGRTFTWL ENSBTAP00000003490/1-1044 VDPWVLLEAL THRKIEAKTE EVICPLTLEL SAYARDAMAK AVYGRTFTWL ENSTTRP00000006059/1-1028 VNPWDLLEAL THRKIEAKTE EVICPLTLEL SAYARDAMAK AVYGRTFTWL bmy_08283T0/1-985 VHPWVLLEAL THRKIEAKTE EVICPLTLEL SAYARDAMAK AVYGRTFTWL BACU008379/1-902 VHPWVLLEAL THRKIEAKTE EVICPLTLEL SAYARDAMAK AVYGRTFTWL 401 450 ENSP00000439182/1-1022 VNKINSSLVN KDFTRKTVIG LLDIYGFEVF DKNGFEQFCI NYCNEKLQQL ENSBTAP00000003490/1-1044 VNKINSSLVN KDFTGKTVIG LLDIYGFEVF DKNGFEQFCI NYCNEKLQQL ENSTTRP00000006059/1-1028 VNKINSSLVN KXXXXXXXXX XXXXXXXXXX XXXXFEQFCI NYCNEKLQQL bmy_08283T0/1-985 VNKINSSLVN KDFTGKTVIG LLDIYGFEVF DRNG------ ---------- BACU008379/1-902 VNKINSSLVN KDFTGKTVIG LLDIYGFEVF DKNGFEQFCI NYCNEKLQQL 451 500 ENSP00000439182/1-1022 LIERTLKAEQ AEYEMEGIEW EPIKYFNNKI ICDLVEERHK GIISILDEEC ENSBTAP00000003490/1-1044 LIERTLKAEQ AEYEMEGIEW EPIQYFNNKI ICDLVEERHK GIISILDEEC ENSTTRP00000006059/1-1028 LIERTLKAEQ AEYEMEGIEW EPIQYFNNKI ICDLVEERHK GIISILDEEC bmy_08283T0/1-985 ---------- ---------- ---------- ---------- ---------- BACU008379/1-902 LIERTLKAEQ AEYEMEGIEW EPIQYFNNKI ICDLVEERHK GIISILDEEC 501 550 ENSP00000439182/1-1022 IRPGPATDLS FLEKLEEKVG KHAHFETRKL AGPKGRKRIG WMEFRLLHYA ENSBTAP00000003490/1-1044 VRPGPATDLS FLERLEEKVG KHAHFETRKL AGPRGRKKIG WMEFRLFHYA ENSTTRP00000006059/1-1028 IRPGPATDLS FLERLEEKVG KHAHFQTRKL AGPKCRKRIG WMEFRLFHYA bmy_08283T0/1-985 ---------- ---------- -------RKL AGPKGRKRIG WMEFRLFHYA BACU008379/1-902 IRPGPATDLS FLERLEEKVG KHAHFQTRKL AGPKGRKRIG WMEFRLFHYA 551 600 ENSP00000439182/1-1022 GEVTYCTKGF LEKNNDLLYR HLKEVLCKSK NIILRECFLL AELENRRRPP ENSBTAP00000003490/1-1044 GEVTYCARGF LEKNNDLLYR HLKEVLCRSK NRILKECFLV AELENRRRAP ENSTTRP00000006059/1-1028 GEVTYCTKGF LEKNNDLLYR HLKEVLCRSK NRILKECFRV AELENRRRPP bmy_08283T0/1-985 GEVTYCTEGF LEKNNDLLYR HLKEVLCRSK NRILKECFRV AELENRRRPP BACU008379/1-902 GEVTYCTEGF LEKNNDLLYR HLKEVLCRSK NRILKECFRV AELENRRRPP 601 650 ENSP00000439182/1-1022 TVGTQFKNSL SSLLETLISK EPSYIRCIKP NDRKEPSKFD DFLIRHQIKY ENSBTAP00000003490/1-1044 TVGTQFKNSL SSLLEILISK EPSYIRCIKP NESKEPSKFD DFLIRHQVKY ENSTTRP00000006059/1-1028 TVGTQFKNSL SSLLEILISK EPSYIRCIKP NESKEPSKFD VFLIRHQIKY bmy_08283T0/1-985 TVGTQFKNSL SSLLEILISK EPSYIRCIKP NESKEPSKFD DFLIRHQVKY BACU008379/1-902 TVGTQFKNSL SSLLEILISK EPSYIRCIKP NESKEPSKFD DFLIRHQVKY 651 700 ENSP00000439182/1-1022 LGLMEHLRVR RAGFAYRRKY EHFLQRYKSL CPDTWPHWHG PPAEGVERLI ENSBTAP00000003490/1-1044 LGLMEHLRVR RAGFAYRRKY EHFLQRYKSL CPDTWPHWHG PPEEGVERLI ENSTTRP00000006059/1-1028 LGLMEHLRLR RAGFAYRRKY EHFLQRYKSL CPDTWPHWHG PPAEGVERLI bmy_08283T0/1-985 LGLMEHLRVR RAGFAYRRKY EHFLQRYKSL CPDTWPHWHG PPAEGVERLI BACU008379/1-902 LGLMEHLRVR RAGFAYRRKY EHFLQRYKSL CPDTWPHWHG PPAEGVERLI 701 750 ENSP00000439182/1-1022 KYIGYKPEEY KLG--KTKIF IRFPRTLFAT EDAFEFSKHQ L--------- ENSBTAP00000003490/1-1044 KYIGYKPEEY KLG--RTKIF IRFPRTLFAT EDAFEFSKHQ L--------- ENSTTRP00000006059/1-1028 KYIGYKPEEY KLGSSRSKIF IRFPRTLFAT -DAFEFSKHQ L--------- bmy_08283T0/1-985 KYIGYEPEEY KLG--RTKIF IRFPRTLFAT EDAFEFSKHQ LGMVFFPALI BACU008379/1-902 KYIGYEPEEY KLG--R---- ---------- ---------- ---------- 751 800 ENSP00000439182/1-1022 ---VARIQAT YKRCLGRREY VKKRQAAIKL EAHWRGALAR KAIQRRKWAV ENSBTAP00000003490/1-1044 ---VARIQAT YRRCLERRAY VRKRQAAITL EAHWRGALAR KEAKRRKWAV ENSTTRP00000006059/1-1028 ---IARIQAM YKGCLERRAY VRKRQAAIKL EAHWRGALAR KEAKRRKWAV bmy_08283T0/1-985 LTEFGRIQAT YKGCLERRAY VRKRQAAIKL EAHWRGALAR KEAKRRKWAV BACU008379/1-902 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000439182/1-1022 RIIRKFIKGF ISRNKPLCPD NEEFIVFVRK NYILNLRYHL PKTVLDKSWL ENSBTAP00000003490/1-1044 QTVRKFIKGF INRNKPLCPD NEEFIVFVRK NYILNLRHHV PKNVLDKSWL ENSTTRP00000006059/1-1028 QIIRKFIKGF IHRNKPLCPD NEEFIVFVRK NYILNLRYHV PENVLDDSWL bmy_08283T0/1-985 QIIRKFIKGF INRNKPLCPD NEEFIVFVRK NYILNLRYHV PKNVLDKSWL BACU008379/1-902 -----FIKGF INRNKPLCPD NEEFIVFVRK NYILNLRYHV PKNVLDKSWL 851 900 ENSP00000439182/1-1022 RPPGILEN-- ---------- ---------A SDLLRKMCVR NLVQKYCRGI ENSBTAP00000003490/1-1044 RPPGILET-- ---------- ---------A SDLLRKMCTR NLVRKYCHGI ENSTTRP00000006059/1-1028 RPPGLLEN-- ---------- ---------A SNLLRKMCMR NLVRKYCRGI bmy_08283T0/1-985 RPPGILENVR TLPELTLQTT WKRRVFSTQA SNLLRKMCMR NLVRKYCRGI BACU008379/1-902 RPPGILEN-- ---------- ---------A SNLLRKMCMR NLVRKYCRGI 901 950 ENSP00000439182/1-1022 TAERKAMMQQ KVVTSEIFRG RKDGYTESLN QPFVNSRIDE GDINPKVLQL ENSBTAP00000003490/1-1044 TAERRALMQE KVVMSEIFEG KKEGYTESLH QPFANSRVDE GDINPKVLQL ENSTTRP00000006059/1-1028 TAERKALMQQ KVVTSEIFRG KKEGYAESLN QPFANSRIDE GDINPKVLQL bmy_08283T0/1-985 TAERKALMQQ KVVTSEMFRG KKEGYAESLN QPFANSRIDE GDINPKVLQL BACU008379/1-902 TDERKALMQQ KVVTSEIFRG KKEGYAESLN QPFANSRIDE GDINPKVLQL 951 1000 ENSP00000439182/1-1022 ISHEKIQYGV PVIKYDRKGF KARQRQLILT QKAAYVVELA KIKQKIEYSA ENSBTAP00000003490/1-1044 LSSEKIQYGV PVIKYDRKGF KTRQRQLILT QKAAYVVELA KIKQKIEYPA ENSTTRP00000006059/1-1028 ISSEKIQYGI PVIKYDRKGF KTRQRQLILT QKAAYVVELA KIKQKIEYPA bmy_08283T0/1-985 ISSEKIQYGI PVIKYDRKGF KTRQRQLILT QKAAYVVELA KIKQKIEYPA BACU008379/1-902 ISSEKIQYGI PVIKYDRKGF KTRQRQLILT QKAAYVVELA KIKQKIEYPA 1001 1050 ENSP00000439182/1-1022 LKGVSTSNLS DGILVIHVSP EDSKQKGDAV LQCGHVFEAV TKLVMLVKKE ENSBTAP00000003490/1-1044 LKGVSTSSLS DGILVIHILQ ADIKQKGDVI LQCEHIFEAV TKLAMLVKKE ENSTTRP00000006059/1-1028 LKGVSTSSFS DGMLVIHVSP EGNRQKGDAV LQCEHIFEAV TKLVMLAKKE bmy_08283T0/1-985 LKGVSTSSFS DGILVIHISP EDNKQKGDAV LQCKHIFEAV TKLVMLVKKE BACU008379/1-902 LKGVSTSSFS DGILVIHVSP EDNKQKGDAV LQCKHIFEAV TKLVMLVKKE 1051 1100 ENSP00000439182/1-1022 NIVNVVQGSL QFFISPGKEG TIVFDTGLEE QVYKNKNGQL TVV--SVRRK ENSBTAP00000003490/1-1044 NLVNVVQGSL QFCISPGKEG TIVFDTGPEE QIYKDKNGQL TVV--SGWVW ENSTTRP00000006059/1-1028 NIVNVVQGSL QFYISPGKEG TIVFDTGPEE QIYKDKNGQL TVV--SGRVW bmy_08283T0/1-985 NVVNVVQGSL QFYISPGKEG TIVFDTGPEE QIYKDKNGQL TVV--SGRVW BACU008379/1-902 NIVNVVQGSL QFYISPGKEG TIVFDTGPEE QIYKDKNGQL TVLRKAPRKL 1101 1150 ENSP00000439182/1-1022 S--------- ------ ENSBTAP00000003490/1-1044 GREA------ ------ ENSTTRP00000006059/1-1028 GG-------- ------ bmy_08283T0/1-985 GGGGVS-SFK ------ BACU008379/1-902 EFGPVSDTFK QRFQQL