KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:05 2014 Check: 00 .. Name: BACU008380/1-1205 Len: 1206 Check: 8083 Weight: 1.00 Name: ENSP00000340596/1-1068 Len: 1206 Check: 5941 Weight: 1.00 Name: ENSBTAP00000003493/1-1068 Len: 1206 Check: 4296 Weight: 1.00 Name: bmy_08286T0/1-579 Len: 1206 Check: 8840 Weight: 1.00 Name: ENSTTRP00000010216/1-1065 Len: 1206 Check: 3672 Weight: 1.00 // 1 50 BACU008380/1-1205 MVLQGLCKFA NMFTVSQTSR AWFIDRARQA REERLVQKER ERAAVEIQAH ENSP00000340596/1-1068 ---------- -MFTLSQTSR AWFIDRARQA REERLVQKER ERAAVVIQAH ENSBTAP00000003493/1-1068 ---------- -MFTVSQTSR AWFIDRARQA REERLVQKER ERAAVEIQAH bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 ---------- -MFTVSQTSR AWFIDRARQA REERLVQKER ERAAVEIQAH 51 100 BACU008380/1-1205 VRSFLCRRRL QREIRREIDE FFKEDDSGSS KRSALCIFKT ARKLLFLFRI ENSP00000340596/1-1068 VRSFLCRSRL QRDIRREIDD FFKADDPEST KRSALCIFKI ARKLLFLFRI ENSBTAP00000003493/1-1068 IRSFLCRRRL QREIRREIDE FFKAEDSGSS KRSALCIFKI ARKLLFLFRI bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 VRSFLCRRRL QREIRREIDE FFKADDSGSS KRSALCIFKT ARKLLFLFRI 101 150 BACU008380/1-1205 KEDDERFEKL CRCILSSMDA ENEPKVWYVS LALSKDLTLL WIKQIKDILW ENSP00000340596/1-1068 KEDNERFEKL CRSILSSMDA ENEPKVWYVS LACSKDLTLL WIQQIKNILW ENSBTAP00000003493/1-1068 KEDNERFEKL CRCILSSMEA ENEPKVWYVS LALSKDLTLL WIKQIKDILW bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 KEDDERFEKL CRCILSSMDV ENEPKVWYVS LALSKDLTLL WIKQIKDVMW 151 200 BACU008380/1-1205 YCCEFLEQLK PEILQDSKLI TLYLTMLVTF TDTSTWKILR GKGESLRPAM ENSP00000340596/1-1068 YCCDFLKQLK PEILQDSRLI TLYLTMLVTF TDTSTWKILR GKGESLRPAM ENSBTAP00000003493/1-1068 YCCEFLEQLK PEILQDSKLI TLYLTMLVTF TDTSTWKILR GKGESLRPAL bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 YCCEFLEQLK PEILQDSKLI TLYLTMLVTF TDTSTWKILR GKGESLRPAM 201 250 BACU008380/1-1205 NRICANIMGH LNQHGFYSVL QVLLTRGLAR PRPCLSKGTL TAAFSLAMRP ENSP00000340596/1-1068 NHICANIMGH LNQHGFYSVL QILLTRGLAR PRPCLSKGTL TAAFSLALRP ENSBTAP00000003493/1-1068 NHICANIMGH LNQRGFYPVL QILLTRGLAR PRPCLSKGTL TAAFSLAMRP bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 NHICANIMGH LNQHGFYSVL QVLLTRGLAR PRPCLSKGTL TAAFSLAMRP 251 300 BACU008380/1-1205 VIAAQFSDNL IRPFLIHIVS VPALVTHLST VTPERLTILE SHDMLRKFIT ENSP00000340596/1-1068 VIAAQFSDNL IRPFLIHIMS VPALVTHLST VTPERLTVLE SHDMLRKFII ENSBTAP00000003493/1-1068 VLAAQFSDNL IRPFLIHIVS VPALVTHLST VTPERLTVLE SHDMLRKFIA bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 VIAAQFSDNL IRPFLIHIVS VPALMTHLST VTPERLTILE SHDMLRKFIT 301 350 BACU008380/1-1205 FLRDEDRCRD VCESLEGCHT LCLMGNLLHL GSLSHRVLEE ETDGFVSLLT ENSP00000340596/1-1068 FLRDQDRCRD VCESLEGCHT LCLMGNLLHL GSLSPRVLEE ETDGFVSLLT ENSBTAP00000003493/1-1068 FLRDEDRCRD VCESLEGCHT LCLMGNLLQL GSLSPRVLEE ETDGFVSLLT bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 FLRDEDRCRD VCESLEGCHT LCLMGNLLHL GSLSP-VIEE ETDGFVSLLT 351 400 BACU008380/1-1205 QMLCYCQKYV SQKKSNLTHW HPVLGWFSQS VDYGLNESMP LVTRQLQFLW ENSP00000340596/1-1068 QTLCYCRKYV SQKKSNLTHW HPVLGWFSQS VDYGLNESMH LITKQLQFLW ENSBTAP00000003493/1-1068 QMLCYCQKYV SQKKSNLTHW HPVLGWFSQS VDYGLNESMP LITKQLQFLW bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 QMLCYCQKYV SQKKS-LTHW -PVLGWFSQS VDYGLNESMP LVTRQLQFLW 401 450 BACU008380/1-1205 GVPLIRIFFS DILSKKLLEN QEPVHAPPAS PQNVLPVKTL LKRAFQKSAS ENSP00000340596/1-1068 GVPLIRIFFC DILSKKLLES QEPAHAQPAS PQNVLPVKSL LKRAFQKSAS ENSBTAP00000003493/1-1068 GVPLIRVFFS DILSKKLLET QEPAHAPPAS PQNVLPVKTL LKRAFQKSAS bmy_08286T0/1-579 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 GVPLIRIFFS DILSKKLLEN QEPVHVPPAS PQNVLPVKTL LKRAFQKSAS 451 500 BACU008380/1-1205 VRNILRPVGG KRVDSAEVQK VCNICVLYQT SLTTLTQIRL QILTGLTYLD ENSP00000340596/1-1068 VRNILRPVGG KRVDSAEVQK VCNICVLYQT SLTTLTQIRL QILTGLTYLD ENSBTAP00000003493/1-1068 VRNILRPVGG KRVDSTEAQK VCRVCVLYQT SLATLTQIRL QVLTGLTYLD bmy_08286T0/1-579 ---------- ---------- ---------- ---------- -----LTYLD ENSTTRP00000010216/1-1065 VRNILRPVGG KRVDSAEVQK VCNICVLYQT SLTTLTQIRL QILTGLTYLD 501 550 BACU008380/1-1205 DLLPKLWAFI CELGPHGGLK LFLECLNNDT EESKQLLAML MLFCDCSRHL ENSP00000340596/1-1068 DLLPKLWAFI CELGPHGGLK LFLECLNNDT EESKQLLAML MLFCDCSRHL ENSBTAP00000003493/1-1068 DLLPKLWAFI CELGPHGGLK LFLECLNNDT EESKQLLAML MLFCDCSRHL bmy_08286T0/1-579 DLLPKLWAFI CELGPHGGLK LFLECLNNDT EESKQLLAML MLFCDCSRHL ENSTTRP00000010216/1-1065 DLLPKLWAFI CELGPHGGLK LFLECLNNDT EESKQLLAML MLFCDCSRHL 551 600 BACU008380/1-1205 ITILDDIEVY EEQISFKLEE LITISSFLNS FVFKMIWDGI VENAKGETLE ENSP00000340596/1-1068 ITILDDIEVY EEQISFKLEE LVTISSFLNS FVFKMIWDGI VENAKGETLE ENSBTAP00000003493/1-1068 ITILDDIEVY EEQISFKLEE LVTISSFLNS FVFKMIWDGI VENAKGETLE bmy_08286T0/1-579 ITILDDIEVY EEQISFKLEE LITISSFLNS FVFKMIWDGI VENAKGETLE ENSTTRP00000010216/1-1065 ITILDDIEVY EEQISFKLEE LVTISSFLNS FVFKMIWDGI VENAKGETLE 601 650 BACU008380/1-1205 LFQSVHGWLM VLYERDCRRR FAPEDHWLRK DLKPSVLFQE LDKDRKRAQL ENSP00000340596/1-1068 LFQSVHGWLM VLYERDCRRR FTPEDHWLRK DLKPSVLFQE LDRDRKRAQL ENSBTAP00000003493/1-1068 LFQSVHGWLM VLYERDCRRR FAPEDHWLRK DLKPSVLFQE LDKDRKRAQL bmy_08286T0/1-579 LFQSVHGWLM VLYERDCRRR FAPEDHWLR- ----NVLFQE LDKDRKRAQL ENSTTRP00000010216/1-1065 LFQSVHGWLM VLYERDCRRR FAPEDHWLRK DLKPSVLFQE LDKDRKRAQL 651 700 BACU008380/1-1205 ILQYIPHVIP HKNRVLLFRN MVTKEKEKLG LVETSSASPH VTHITIRRSR ENSP00000340596/1-1068 ILQYIPHVIP HKNRVLLFRT MVTKEKEKLG LVETSSASPH VTHITIRRSR ENSBTAP00000003493/1-1068 ILQYIPHVIP HKNRVLLFRN MVTKEKEKLG LVETSSASPH VTHITIRRSR bmy_08286T0/1-579 ILQYIPHVIP HKNRVLLFRN MVTKEKEKLG LVETSSASPH VTHITIRRSR ENSTTRP00000010216/1-1065 ILQYIPHVIP HKNRVLLFRN MVTKEKERLG LVETSSASPH VTHITIRRSR 701 750 BACU008380/1-1205 MLEERLGFVD LPMLALLPFI TLQPQFLIGM FCSVEQSGDP RTARGRIASR ENSP00000340596/1-1068 MLE------- ---------- ---------- ---------- ---------- ENSBTAP00000003493/1-1068 MLE------- ---------- ---------- ---------- ---------- bmy_08286T0/1-579 MLE------- ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 MLE------- ---------- ---------- ---------- ---------- 751 800 BACU008380/1-1205 QQTASAAALP PHADGYEQLR QLSQHAMKGV IRVKFVNDLG VDEAGIDQDG ENSP00000340596/1-1068 ---------- ---DGYEQLR QLSQHAMKGV IRVKFVNDLG VDEAGIDQDG ENSBTAP00000003493/1-1068 ---------- ---DGYEQLR QLSQHAMKGV IRVKFVNDLG VDEAGIDQDG bmy_08286T0/1-579 ---------- ---DGYEQLR QLSQHAMKGV IRVKFVNDLG VDEAGIDQDG ENSTTRP00000010216/1-1065 ---------- ---DGYEQLR QLSQHAMKGV IRVKFVNDLG VDEAGIDQDG 801 850 BACU008380/1-1205 VFKEFLEEII KRVFDPALNL FKTTSGDERL YPSPTSYIHE NYLQLFEFVG ENSP00000340596/1-1068 VFKEFLEEII KRVFDPALNL FKTTSGDERL YPSPTSYIHE NYLQLFEFVG ENSBTAP00000003493/1-1068 VFKEFLEEII KRVFDPALNL FKTTSGDERL YPSPTSYIHE NYLQLFEFVG bmy_08286T0/1-579 VFKEFLEEII KRVFDPALNL FKTTSGDERL YPSPTSYIHE NYLQLFEFVG ENSTTRP00000010216/1-1065 VFKEFLEEII KRVFDPALNL FKTTSGDERL YPSPTSYIHE NYLQLFEFVG 851 900 BACU008380/1-1205 KMLGKAVYEG IVVDVPFAPF FLSQLLGHHH SVFYSSVDEL PSLDSEFYKN ENSP00000340596/1-1068 KMLGKAVYEG IVVDVPFASF FLSQLLGHHH SVFYSSVDEL PSLDSEFYKN ENSBTAP00000003493/1-1068 KMLGKAVYEG IVVDVPFASF FLSQLLGHHH SVFYSSVDEL PSLDSEFYKN bmy_08286T0/1-579 KMLGKAVYEG IVVDVPFASF FLSQLLGHHH SVFYSSVDEL PSLDSEFYKN ENSTTRP00000010216/1-1065 KMLGKAVYEG IVVDVPFASF FLSQLLGHHH SVFYSSVDEL PSLDSEFYKN 901 950 BACU008380/1-1205 LTSIKRYDGD IADLGLTLSY DEDVMGQLVC HELIPGGKTI PVTNENKISY ENSP00000340596/1-1068 LTSIKRYDGD ITDLGLTLSY DEDVMGQLVC HELIPGGKTI PVTNENKISY ENSBTAP00000003493/1-1068 LTSIKRYDGD IADLGLTLSY DEDVMGQLVC HELVPGGKTI PVTNENKISY bmy_08286T0/1-579 LTSIKRYDGD IADLGLTLSY DEDVMGQLVC HELIPGGKTI PVTNENKISY ENSTTRP00000010216/1-1065 LTSIKRYDGD IADLGLTLSY DEDVMGQLVC HELIPGGKTI PVTNENKISY 951 1000 BACU008380/1-1205 IHLMAHFRMH TQIKNQTAAL ISGFRSIIKP EWTRMFSTPE LQRLISGDNA ENSP00000340596/1-1068 IHLMAHFRMH TQIKNQTAAL ISGFRSIIKP EWIRMFSTPE LQRLISGDNA ENSBTAP00000003493/1-1068 IHLMAHFRMH TQIKNQTAAL ISGFRSIIKP EWIRMFSTPE LQRLISGDNA bmy_08286T0/1-579 IHLMAHFRMH TQIKNQTAAL ISGFRSIIKP EWTRMFSTPE LQRLISGDNA ENSTTRP00000010216/1-1065 IHLMAHFRMH TQIKNQTAAL ISGFRSIIKP EWTRMFSTPE LQRLISGDNA 1001 1050 BACU008380/1-1205 EIDLEDLKKH TVYYGGFHGS HRVIIWLWDI LASDFTPDER AMFLKFVTSC ENSP00000340596/1-1068 EIDLEDLKKH TVYYGGFHGS HRVIIWLWDI LASDFTPDER AMFLKFVTSC ENSBTAP00000003493/1-1068 EIDLEDLKKH TVYYGGFHGS HRVIIWLWDI LASDFTPEER AMFLKFVTSC bmy_08286T0/1-579 EIDLEDLKKH TVYYGGFHGS HRVIIWLWDI LASDFTPDER AMFLKFVTSC ENSTTRP00000010216/1-1065 EIDLEDLKKH TVYYGGFHGS HRVIIWLWDI LASDFTPDER AMFLKFVTSC 1051 1100 BACU008380/1-1205 SRPPLLGFAY LKPPFSIRCV EVSDDQDTGD TLGSVLRGFF TIRKREPGKA ENSP00000340596/1-1068 SRPPLLGFAY LKPPFSIRCV EVSDDQDTGD TLGSVLRGFF TIRKREPG-- ENSBTAP00000003493/1-1068 SRPPLLGFAY LKPPFSIRCV EVSDDQDTGD TLGSVLRGFF TIRKREPG-- bmy_08286T0/1-579 SRPPLLGFAY LKPPFSIRCV EVSDDQDTGD TLGSVLRGFF TIRKREPG-- ENSTTRP00000010216/1-1065 SRPPLLGFAY LKPPFSIRCV EVSDDQDTGD TLGSVLRGFF TIRKREPG-- 1101 1150 BACU008380/1-1205 SPSLYAPDRV SASVPSTAAS LQIAR-PTCS QAAEVPAGET TEHRKLRALL ENSP00000340596/1-1068 ---------- -GRLPTSSTC FNLLKLPNYS K-------KS VLREKLRYAI ENSBTAP00000003493/1-1068 ---------- -GRLPTSSTC FNLLKLPNYS K-------KS VLREKLRYAI bmy_08286T0/1-579 ---------- -GRLPTSSTC FNLLKLPNYS K-------KS VLREKLRYAI ENSTTRP00000010216/1-1065 ---------- -GRLPTSSTC FNLLKLPNYS K-------KS VLREKLRYAI 1151 1200 BACU008380/1-1205 PPQSHEFHLA AVLCPFSPQM LRVLSSRAAR ELLLACSRLG HSRWHPEFGR ENSP00000340596/1-1068 SMNTG-FELS ---------- ---------- ---------- ---------- ENSBTAP00000003493/1-1068 SMNTG-FELS ---------- ---------- ---------- ---------- bmy_08286T0/1-579 SMNTG-FELS ---------- ---------- ---------- ---------- ENSTTRP00000010216/1-1065 SMNTG-FELS ---------- ---------- ---------- ---------- 1201 1250 BACU008380/1-1205 KKPISP ENSP00000340596/1-1068 ------ ENSBTAP00000003493/1-1068 ------ bmy_08286T0/1-579 ------ ENSTTRP00000010216/1-1065 ------