KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:06 2014 Check: 00 .. Name: bmy_03491T0/1-555 Len: 757 Check: 3893 Weight: 1.00 Name: BACU010841/1-745 Len: 757 Check: 8489 Weight: 1.00 Name: ENSTTRP00000011548/1-714 Len: 757 Check: 9814 Weight: 1.00 Name: ENSP00000261534/1-750 Len: 757 Check: 828 Weight: 1.00 Name: ENSBTAP00000003502/1-752 Len: 757 Check: 1729 Weight: 1.00 // 1 50 bmy_03491T0/1-555 MPPAVGGGLA GSELRPRRGR CGSQAARAVG PDVATE-ATA RSPKRPA-PS BACU010841/1-745 MPPAVGGGLA GSELRPRRGR CGSQAARAVG PDVATE-ATV WSPKRPA-PS ENSTTRP00000011548/1-714 MPPAVGGGLA GSELRPRRGR CGS-AARAVG PDVAAE-ATT RSPKRPA-PS ENSP00000261534/1-750 MPPATGGGLA ESELRPRRGR CGPQAARAAG RDVAAE-AVA RSPKRPA-WG ENSBTAP00000003502/1-752 MPPAAGGGLA GSELRPRRGR CGSQAARAAG RDVATEAATA RSPKRPALPS 51 100 bmy_03491T0/1-555 LRRFEAPGRW ALLALVTLMS FATRFHRLDQ PPHICWDETH FGKMGSYYIN BACU010841/1-745 SRRFEAPGRW ALLALVTLMS FATRFHRLDQ PPHICWDETH FGKMGSYYIN ENSTTRP00000011548/1-714 SRRFEAPGRW ALLALVTLMS FATRFHRLDQ PPHICWDETH FGKMGSYYIN ENSP00000261534/1-750 SRRFEAVGWW ALLALVTLLS FATRFHRLDE PPHICWDETH FGKMGSYYIN ENSBTAP00000003502/1-752 SRRFEAAGRW ALLALVTLTS FASRFHRLDQ PPHICWDETH FGKMGSYYIN 101 150 bmy_03491T0/1-555 RTFFFDVHPP LGKMLIGLAG YLSGYDGTFL FQKPGDKYEH HSYLGMRGLC BACU010841/1-745 RTFFFDVHPP LGKMLVGLAG YLSGYDGTFL FQKPGDKYEH HSYLGMRGFC ENSTTRP00000011548/1-714 RTFFFDVHPP LGKMLIGLAG HLTGYDGTFL FQKPGDEYEH HSYLGMRGFC ENSP00000261534/1-750 RTFFFDVHPP LGKMLIGLAG YLSGYDGTFL FQKPGDKYEH HSYMGMRGFC ENSBTAP00000003502/1-752 RTFFFDVHPP LGKMLIGLAG YLSGYDGTFL FQKPGDNYEH HSYMGMRGFC 151 200 bmy_03491T0/1-555 ---------- ---------R ALPRAPGKSQ FHSINLAVFP L--------- BACU010841/1-745 AFLGALLIPF AYLTVLELSQ SLPAALLTAA LLTFDTGCLT LSQYILLDPI ENSTTRP00000011548/1-714 AFLGALLIPF AYLTVLELSQ SLPAALLTAA LLTFDTGCLT LSQYILLDPI ENSP00000261534/1-750 AFLGSWLVPF AYLTVLDLSK SLSAALLTAA LLTFDTGCLT LSQYILLDPI ENSBTAP00000003502/1-752 AFLGSMLIPL AYLTVLELSR SLSAALLTAA LLTFDTGCLT LSQYILLDPI 201 250 bmy_03491T0/1-555 ---------- ---------- -PFPT----- ---------- ---------- BACU010841/1-745 LMFFIMAAML SMVKYNSCAN RPFSAPWWLW LSLTGVNLAG ALGVKFVGLF ENSTTRP00000011548/1-714 LMFFIMAAML SMVKYNSYAN RPFSAPWWLW LSLTGVNLAG ALGVKFVGLF ENSP00000261534/1-750 LMFFIMAAML SMVKYNSCAD RPFSAPWWFW LSLTGVSLAG ALGVKFVGLF ENSBTAP00000003502/1-752 LMFFIMAAML SMVKYNSCAN RPFSAPWWFW LSLTGVNLAG ALGVKFVGLF 251 300 bmy_03491T0/1-555 VVL------- ---------- ---------- ----VMASSV LP-------- BACU010841/1-745 IILQVGWNTL SDLWHLFGDL SLSMVTVGKH LTARVLCLIV LPLALYTATY ENSTTRP00000011548/1-714 IILQVGWNTV SDLWHLFGDL SLSMVTVGKH LTARILCLIV LPLALYTATY ENSP00000261534/1-750 IILQVGLNTI ADLWYLFGDL SLSLVTVGKH LTARVLCLIV LPLALYTATF ENSBTAP00000003502/1-752 IILQVGWNTL SDLWHLFGDL SLSMVTLGKH LTARILCLIV LPLALYIATY 301 350 bmy_03491T0/1-555 ---------- -SRPGFQETT FTMLPS---- PNVSVSCPLR SDCLLPPTSS BACU010841/1-745 AVHFMVLNKS GPGDGFFSSA FQARLSGNNL HNASIPEHLA YGSVITVKSA ENSTTRP00000011548/1-714 AVHFMVLNKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLA YGSVITVKSA ENSP00000261534/1-750 AVHFMVLSKS GPGDGFFSSA FQARLSGNNL HNASIPEHLA YGSVITVKNL ENSBTAP00000003502/1-752 AVHFMVLNKS GPGDGFFSSA FQARLSGNNL HNASIPEHLA YGSVITVKNL 351 400 bmy_03491T0/1-555 SL-------- ---------P HPTQVTTYLH KDYNNLWIIK KHNTDSDPLD BACU010841/1-745 RMAVGYLHSH GHLYPEGIGA HQQQVTTYLH KDYNNLWIIK KHNTNSDLLD ENSTTRP00000011548/1-714 RMAVGYLHSH GHLYPEGIGA RQQQVTTYLH KDYNNLWIIK KHNTNSDPLD ENSP00000261534/1-750 RMAIGYLHSH RHLYPEGIGA RQQQVTTYLH KDYNNLWIIK KHNTNSDPLD ENSBTAP00000003502/1-752 RMAIGYLHSH RHFYPEGVGA RQQQVTTYLH KDYNNLWIIK KHNSNSDPLD 401 450 bmy_03491T0/1-555 PSLPVEFVRH GDVIRLEHKE TSRNLHSHYH EAPLTRKHYQ VTGYGINGTG BACU010841/1-745 PSLPVEFVRH GDIIRLEHKE TSRNLHSHYH EAPLTRKHYQ VTGYGINGTG ENSTTRP00000011548/1-714 PSLPVEFVKH GDVIRLEHKE TSRNLHSHYH EAPLTRKHYQ VTGYGINGTG ENSP00000261534/1-750 PSFPVEFVRH GDIIRLEHKE TSRNLHSHYH EAPMTRKHYQ VTGYGINGTG ENSBTAP00000003502/1-752 PSLPVEFVRH GDIIRLEHKE TSRNLHSHYH EAPLTRKHYQ VTGYGINGSG 451 500 bmy_03491T0/1-555 DSNDFWRIEV VNRKFGNRIK VLRSRIRLIH LVTGCVLGSS GKVLPKWGWE BACU010841/1-745 DSNDFWRIEV VNRKFGNRIK VLRSRIRLIH LVTGCVLGSS GKVLPKWGWE ENSTTRP00000011548/1-714 DSNDFWRIEV VNRKFGNRIK VLRSRIRLIH LVTGCVLGSS GKVLPKWGWE ENSP00000261534/1-750 DSNDFWRIEV VNRKFGNRIK VLRSRIRFIH LVTGCVLGSS GKVLPKWGWE ENSBTAP00000003502/1-752 DSNDFWRIEV INRKFGNRIK VLRSRIRLIH LITGCVLGSS GKVLPKWGWE 501 550 bmy_03491T0/1-555 QLEVTCTPYL KETLNSIWNV EDHINPKLPN ISLDVLQPSF PEMMLEAHMV BACU010841/1-745 QLEVTCTPYL KETLNSIWNV EDHINPKLPN ISLDVLQPSF PEIMLEAHMV ENSTTRP00000011548/1-714 QLEVTCTPYL KETLNSIWNV EDHINPKLPN ISLDVLQPSF PEIMLEAHMV ENSP00000261534/1-750 QLEVTCTPYL KETLNSIWNV EDHINPKLPN ISLDVLQPSF PEILLESHMV ENSBTAP00000003502/1-752 QMEVTCTPYL KETLSSIWNV EDHINPKLPN ISLEVLQPSF PEIMLESHMV 551 600 bmy_03491T0/1-555 MIRGNSGLKP KDNEFTSKPW HWPINYQGLR FSGINDTDFR VYLLGNPVVW BACU010841/1-745 MIRGNSGLKP KDNEFTSKPW HWPINYQGLR FSGINDTDFR VYLLGNPVVW ENSTTRP00000011548/1-714 MIRGNNGLKP KDNEFTSKPW HWPINYQGLR FSGINDTDFR VYLLGNPVVW ENSP00000261534/1-750 MIRGNSGLKP KDNEFTSKPW HWPINYQGLR FSGVNDTDFR VYLLGNPVVW ENSBTAP00000003502/1-752 MIRGNNGLKP KDNEFTSKPW HWPINFQGLR FSGANDTDFR VYLLGNPVVW 601 650 bmy_03491T0/1-555 WLNLLSIALY LLSGSIFAVA VQRGARLPAE VEGQLLPLPS SG-------- BACU010841/1-745 WLNLLSIALY LLSGSIFAVA VQRGARLPAE VEGLSQVLLQ GGGQLLLGWM ENSTTRP00000011548/1-714 WLNLLSIALY LLSGSIFAVA LQRGARLPAE VEGLSQVLLQ GGGQLLLGWM ENSP00000261534/1-750 WLNLLSIALY LLSGSIIAVA MQRGARLPAE VAGLSQVLLR GGGQVLLGWT ENSBTAP00000003502/1-752 WLNLLSIALY VLSASVFAVA VQRGAHLPVE VEGLSQVLLR GGGQLLFGWM 651 700 bmy_03491T0/1-555 ---------- ---------- ---------- -LWDG----- -WSASRGPPK BACU010841/1-745 IHYFPFFLMG RILYFHHYFP AMLFSSMLTG LLWDTLLRLC AWSLASFSL- ENSTTRP00000011548/1-714 MHYFPFFLMG RILYFHHYFP AMLFSSMLTG LLWDTLLRLC AWSLASFSL- ENSP00000261534/1-750 LHYFPFFLMG RVLYFHHYFP AMLFSSMLTG ILWDTLLRLC AWGLASWPL- ENSBTAP00000003502/1-752 MHYFPFFLMG RVLYFHHYFP AMLFSSMLTG LLWDTLLRLC AWSLASYPL- 701 750 bmy_03491T0/1-555 SDGRTKVAGI MGLLRPLQG- ------LQPG SRNFLGTASC GASPWTLPAV BACU010841/1-745 -AGHIHALGI LSLLLGIAYR PISFLLSWVG AAILVGSPGG GIQEPVLGF- ENSTTRP00000011548/1-714 -AGHVHTLGI LSLLLGIAY- ---------- ---------- ---------- ENSP00000261534/1-750 -ARGIHVAGI LSLLLGTAY- --SFYLFHPL AYGMVGPLAQ DPQSPMAGLR ENSBTAP00000003502/1-752 -ARCVHVLGI LSLLLGTAY- --SFYLFHPL AYGMVGPLAQ DPRSPMAGLR 751 800 bmy_03491T0/1-555 EEAA--- BACU010841/1-745 ------- ENSTTRP00000011548/1-714 ------- ENSP00000261534/1-750 WLDSWDF ENSBTAP00000003502/1-752 WLESWDF