KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:07 2014 Check: 00 .. Name: ENSP00000308699/1-546 Len: 710 Check: 8260 Weight: 1.00 Name: ENSBTAP00000003504/1-587 Len: 710 Check: 4231 Weight: 1.00 Name: BACU008672/1-632 Len: 710 Check: 7162 Weight: 1.00 Name: ENSTTRP00000008176/1-546 Len: 710 Check: 2260 Weight: 1.00 Name: bmy_16972T0/1-584 Len: 710 Check: 4511 Weight: 1.00 // 1 50 ENSP00000308699/1-546 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003504/1-587 ---------- ---------- ---------- ---------- ---------- BACU008672/1-632 ---------- ------MRRE AQSTSSLRRD LALQQRDRAE AEAVQRPRDR ENSTTRP00000008176/1-546 ---------- ---------- ---------- ---------- ---------- bmy_16972T0/1-584 DPVPHWLLWG PPPSNEEGGA EHELPAAGSS LAAAGPGRGR XCAKAERPAS 51 100 ENSP00000308699/1-546 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003504/1-587 ---------- ---------- ---------- ---------- ---------- BACU008672/1-632 LLCGGHPFSL RTWSGSQLGL PVAELSISNL EPNPRGSSKI RTEIRTEEWC ENSTTRP00000008176/1-546 ---------- ---------- ---------- ---------- ---------- bmy_16972T0/1-584 LRRTPVLSPD LVWVAARASR RGAVHLQSGT QP---ARLQI RTEIRTEEWG 101 150 ENSP00000308699/1-546 ---------M FYYPNVLQRH TGCFATIWLA ATRGSRLVKR EYLRVNVVKT ENSBTAP00000003504/1-587 ---------M FYYPNVLQRH TGCFATIWLA ATRGCRLVKR EYLNVNVVKT BACU008672/1-632 RRGCNPRGTM FYYPSVLQRH TGCFATIWLA ATRGTRLVKR EYLKVNVVKT ENSTTRP00000008176/1-546 ---------M FYYPSVLQRH TGCFATIWLA ATRGTRLVKR EYLKVNVVKT bmy_16972T0/1-584 RRGCNPRGTM FYYPSVLQRH TGCFATIWLA ATRGTRLVKR EYLKVNVVKT 151 200 ENSP00000308699/1-546 CEEILNYVLV RVQPPQPGLP RPRFSLYLSA QLQIGVIRVY SQQCQYLVED ENSBTAP00000003504/1-587 CEEILNYVLV RVQPPLPGAP RPRFSLYLSA QLQIGVIRVY SQQCQYLVED BACU008672/1-632 CEEILNYVLV RVQPPLPGLP RPRFSLYLSA QLQIGVIRVY SQQCQYLVED ENSTTRP00000008176/1-546 CEEILNYVLV RVQPPLPGLP RPRFSLYLSA QLQIGVIRVY SQQCQYLVED bmy_16972T0/1-584 CEEILNYVLV RVQPPLPGLP RPRFSLYLSA QLQIGVIRVY SQQCQYLVED 201 250 ENSP00000308699/1-546 IQHILERLHR AQLQIRIDM- ETELPSLLLP NHLAMMETLE DAPDPFFGMM ENSBTAP00000003504/1-587 IQHILERLHR AQLQIRIDMV ETELPSLLLP DHLARMETLE DAPDPFFGMM BACU008672/1-632 IQHILERLHR AQLQIRIDMV EAELPSLLLP NHLARMESLE AAPDPFFGMM ENSTTRP00000008176/1-546 IQHILERLHR AQLRIRIDMV ETDLPSLLLP NHLVRMEALE DAPDPFFGMM bmy_16972T0/1-584 IQHILERLHR AQLQIRIDMV ETELPSLLLP NHLARMETLE AAPDPFFGMM 251 300 ENSP00000308699/1-546 SVDPRLPSPF DIPQIRHLLE AAIPERV-EE IPPEVPTEPR EPERIPVTVL ENSBTAP00000003504/1-587 SVAPMLPDPF DIPQVRHLLE AVTPEKVPEE IPPEVPVEPR KPERIRVT-- BACU008672/1-632 SVEPRLPSPL NIPQIRHLLE AVIPERVLEE IPPEVPIE-- -PERIPITAP ENSTTRP00000008176/1-546 SVEPILPSPF KIPQIQHLLE AVTPERVLEE IPPEVPIE-- -PERILVTAP bmy_16972T0/1-584 SVEPRLPSPL NIPQIRHLLE AVIPERVLEE IPPEVPIE-- -PEY------ 301 350 ENSP00000308699/1-546 PPEAITILEA EPIRMLEIEG ERELPEVSRR ELDLLIAE-E EAILLEI--- ENSBTAP00000003504/1-587 -PEAITIQEA EPIRMLRIEG ELDLPEVSRR ELDLLIAEED EAILLEERRL BACU008672/1-632 SPEAITLLEA EPIRMLRIEG ERELPEVSRR ELDLLIAEEE EAILLEE--- ENSTTRP00000008176/1-546 SPEAITLLEV EPIRMLKIEG ERDLPEISRR DLDLLIAEEE EAILL----- bmy_16972T0/1-584 ---------- ---------- ---------- ---------K EELLV----- 351 400 ENSP00000308699/1-546 ---------- ------PR-- --LPPPAPAE VEGIGEA--- -----LGPEE ENSBTAP00000003504/1-587 GRTRLAVDEL KEEPWAPERE ITVPPPSPLA LVGVEEAAEP LPREVLAPEE BACU008672/1-632 --------QY KEELLAPERE ITVPPPSPLA LAEVEEAAEL LPAEVLVPEE ENSTTRP00000008176/1-546 ---------- ------EERR L-VPPPSPLA LPEVEEAAEP LPP------- bmy_16972T0/1-584 ---------- ------PERE IAVPPPSPLA LAEVEEAAEL LPAEVLAPEE 401 450 ENSP00000308699/1-546 LRLTGWEPGA LLMEVTPPEE LRLPA-PPSP E-RRPPV--- -PPPPR---- ENSBTAP00000003504/1-587 LK-----PEV PLPEVTPPLE LRPPPIPVSP EWRRPPV--- -PPPPRGPPA BACU008672/1-632 LKPPGWEPEV LLPAEEAP-- -RPPTCSPPP S---PPVIIL GPGDPD---- ENSTTRP00000008176/1-546 -KPPAWEPEA LLPEVTPPLE LRLPA-PPSP E-RRPPV--- -SPPPS---- bmy_16972T0/1-584 LKPPGWVPEA LLPEITPPPE LRLPA-PPSP E--------- ---------- 451 500 ENSP00000308699/1-546 RRRRRRLLFW DKETQISPEK FQEQLQTRAH CWECPMVQPP ERTIRGPAEL ENSBTAP00000003504/1-587 RRRRRQLLFW DEETQISRKE FQEQLQTRAH CRECPMVQPP ERMIRTPVEL BACU008672/1-632 ---------- ---------- ---------- --------PP EGIPGTNANQ ENSTTRP00000008176/1-546 HLRRRRLLFW DRETQIPRKE FLEQMQTRAH CRECPMVQPP ERMITSPAEL bmy_16972T0/1-584 ---------- ---------- ---------- ----PMVQPP ERMITSPAEL 501 550 ENSP00000308699/1-546 FRTPTLSGWL PPELLGLWTH CAQPPPKALR RELP------ ---EEAAAEE ENSBTAP00000003504/1-587 FRNPTYSGWL PPELLAFWTH CAQPPPRALR RRLPEEL--E EAEREAAAEE BACU008672/1-632 SPLPGVSGRL PQELLAFWTH CAQPLPLALR RRPPPELEEE EAEREAAAEE ENSTTRP00000008176/1-546 FRTPTHSGRL PQELLAFWTH CAQPLPLALR RRPP------ ---REAAAEE bmy_16972T0/1-584 FRTPTHSGRL PQELLAFWTH CAQPLPLALR RRPPPELEEE EAEREAAAEE 551 600 ENSP00000308699/1-546 ERRKIEVPSE IEVPREALEP SVPLMVSLEI SLEAAEEEKS RISLIPPEER ENSBTAP00000003504/1-587 ERRKAETPSD IEVLREAQEP SGPLMVSSEL SLEVAEEEKT RISLVPPEER BACU008672/1-632 ERRKAETPSA IEVLREALEP SGPLMLPSEI SLEAAEEEKP RISLVPLEER ENSTTRP00000008176/1-546 ERRKAETPSD IEVLREALEP SVPLMLPSEI SLEAAEEEKT RISLVPPEER bmy_16972T0/1-584 ERRKAEIPSA IEVLREALEP SWPLVLPSEI SLEAAEEEKP RISLVPLEER 601 650 ENSP00000308699/1-546 WAWPEVEAPE APALPVVPEL PEVPMEMPLV LPPELELLSL EAVHRAVALE ENSBTAP00000003504/1-587 WAWVEAEQPE APVLPVVPEL PEVPVELPVE LPPEPELLSL EAVHRAVARE BACU008672/1-632 WPWAEAELPE APALPVVPEL PEVPVELPVE LPPEPEPLSL EAVHRAVARE ENSTTRP00000008176/1-546 WVW--AEEPE APALPVVPEL PEVPVEMPVE LPPEPELLSL EAVHRAVARE bmy_16972T0/1-584 WPWPEAELPE APALPVVPEL PEVPVELPVE LPPEPEPLSL EAVHRAVARE 651 700 ENSP00000308699/1-546 LQANREPDFS SLVSPLSPRR MAARVFYLLL VLSAQQILHV KQEKPYGRLL ENSBTAP00000003504/1-587 LQADREPDFS SLVPPLSPRR MAARVFYLLL VLATQQILRV KQEEPYGRLL BACU008672/1-632 LQANREPDFS SLVPPLSPRR VAARVFYLLL VLAAQQILCV KQEEPYGRLL ENSTTRP00000008176/1-546 LQAKREPDFS SLVPPLSPRK VAARVFYLLL VLAAQQILCV KQEEPYERLL bmy_16972T0/1-584 LQANREPDFS SLVPPLSPRR VAARVFYLLL VLAAQQILRV KQEEPYGRLL 701 750 ENSP00000308699/1-546 IQPGPRFH-- ENSBTAP00000003504/1-587 IQPGPRFHDS BACU008672/1-632 IQPGPRFHCG ENSTTRP00000008176/1-546 IQPGPRFHC- bmy_16972T0/1-584 IQPGPRFHCG